Vhr1p gene transcriptions: Difference between revisions

Associate Editor(s)-in-Chief: Henry A. Hoff

"Transcription of the Saccharomyces cerevisiae vitamin H transporter gene VHT1 is enhanced by low extracellular biotin."^[1]

"Vhr1p [is] a transcriptional regulator of VHT1 (VHR1 (YIL056w)".^[1]

"Deletion and linker scanning analyses of the VHT1 promoter revealed the palindromic 18-nucleotide sequence AATCA-N₈-TGAYT as the vitamin H-responsive element."^[1]

Human genes

Gene expressions

Vhr1p upstream activator sequence (UAS) occurs in the promoters of VHT1, BIO5 Saccharomyces cerevisiae genes.^[2] Its inducer is biotin where it responds to low biotin concentrations.^[2]

Interactions

Consensus sequences

AATCA-N₈-TGA(C/T)T is the UAS sequence for the transcription factor Vhr1p.^[2]

Binding site for

Hypotheses

A1BG has no regulatory elements in either promoter.
A1BG is not transcribed by a regulatory element.
No regulatory element participates in the transcription of A1BG.

VHR samplings

Copying a responsive elements consensus sequence AATCA-N₈-TGA(C/T)T and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence AATCA-N₈-TGA(C/T)T (starting with SuccessablesVHR.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
positive strand, negative direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
positive strand, positive direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
negative strand, positive direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
complement, negative strand, negative direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
complement, positive strand, negative direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
complement, positive strand, positive direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
complement, negative strand, positive direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
inverse complement, negative strand, negative direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
inverse complement, positive strand, negative direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
inverse complement, positive strand, positive direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
inverse complement, negative strand, positive direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
inverse negative strand, negative direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.
inverse positive strand, negative direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.
inverse positive strand, positive direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.
inverse negative strand, positive direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

References

↑ ^1.0 ^1.1 ^1.2 Matthias Weider, Agnes Machnik, Franz Klebl and Norbert Sauer (12 May 2006). "Vhr1p, a New Transcription Factor from Budding Yeast, Regulates Biotin-dependent Expression of VHT1 and BIO5". Journal of Biological Chemistry. 281 (19): P13513–P13524. doi:10.1074/jbc.M512158200. Retrieved 8 March 2021.
↑ ^2.0 ^2.1 ^2.2 Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

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transcriptions MYB recognition element gene transcriptions Myelocytomatosis transcription factor gene transcriptions Myocyte enhancer factor gene transcriptions N-boxes Ndt80p gene transcriptions Nuclear factor 1 Nuclear factor 𝜿B Nuclear factor gene transcriptions Nuclear factor of activated T cell gene transcriptions (NFAT) Nuclear factor Y gene transcriptions Nutrient-sensing response element gene transcriptions Oaf1p gene transcriptions ORE1 binding site gene transcriptions p53 response element gene transcriptions P63 DNA-binding site gene transcriptions P box gene transcriptions Pdr1,3p gene transcriptions Peroxisome proliferator hormone response element gene transcriptions Phosphate starvation-response transcription factor gene transcriptions Pollen1 element gene transcriptions Polycomb response element gene transcriptions Preinitiation complex Preinitiation complex gene transcriptions Pribnow box gene transcriptions Prolamin box gene transcriptions Promoter gene transcriptions 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transcriptions Transcription factor 3 gene transcriptions Transcription factory gene transcriptions Transcription start site gene transcriptions Translational control sequence gene transcriptions U box gene transcriptions Unfolded protein response element gene transcriptions Upstream response element gene transcriptions Upstream stimulatory factor gene transcriptions UTR promoter gene transcriptions V and P box gene transcriptions V box gene transcriptions Vhr1p gene transcriptions Vitamin D response element gene transcriptions W box gene transcriptions X box gene transcriptions Xbp1p gene transcriptions X core promoter element gene transcriptions Xenobiotic response element gene transcriptions Xenobiotic responsive element gene transcriptions Yap1p,2p gene transcriptions Y box gene transcriptions YY1 gene transcriptions Zap1p gene transcriptions Z box gene transcriptions Zinc responsive element gene transcriptions

@@ Line 59: / Line 59: @@
 Copying a responsive elements consensus sequence AATCA-N<sub>8</sub>-TGA(C/T)T and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.
-For the Basic programs testing consensus sequence AAAAAAAA (starting with SuccessablesVHR.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
+For the Basic programs testing consensus sequence AATCA-N<sub>8</sub>-TGA(C/T)T (starting with SuccessablesVHR.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
-# negative strand, negative direction, looking for AAAAAAAA, 0.
+# negative strand, negative direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
-# positive strand, negative direction, looking for AAAAAAAA, 0.
+# positive strand, negative direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
-# positive strand, positive direction, looking for AAAAAAAA, 0.
+# positive strand, positive direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
-# negative strand, positive direction, looking for AAAAAAAA, 0.
+# negative strand, positive direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
-# complement, negative strand, negative direction, looking for TTTTTTTT, 0.
+# complement, negative strand, negative direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
-# complement, positive strand, negative direction, looking for TTTTTTTT, 0.
+# complement, positive strand, negative direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
-# complement, positive strand, positive direction, looking for TTTTTTTT, 0.
+# complement, positive strand, positive direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
-# complement, negative strand, positive direction, looking for TTTTTTTT, 0.
+# complement, negative strand, positive direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
-# inverse complement, negative strand, negative direction, looking for TTTTTTTT, 0.
+# inverse complement, negative strand, negative direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
-# inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0.
+# inverse complement, positive strand, negative direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
-# inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
+# inverse complement, positive strand, positive direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
-# inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
+# inverse complement, negative strand, positive direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
-# inverse negative strand, negative direction, looking for AAAAAAAA, 0.
+# inverse negative strand, negative direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.
-# inverse positive strand, negative direction, looking for AAAAAAAA, 0.
+# inverse positive strand, negative direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.
-# inverse positive strand, positive direction, looking for AAAAAAAA, 0.
+# inverse positive strand, positive direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.
-# inverse negative strand, positive direction, looking for AAAAAAAA, 0.
+# inverse negative strand, positive direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.
-===VHR UTRs===
-{{main|UTR promoter gene transcriptions}}
-===VHR core promoters===
-{{main|Core promoter gene transcriptions}}
-===VHR proximal promoters===
-{{main|Proximal promoter gene transcriptions}}
-===VHR distal promoters===
-{{main|Distal promoter gene transcriptions}}
 ==Acknowledgements==