GGC triplet gene transcriptions

Jump to navigation Jump to search

Associate Editor(s)-in-Chief: Henry A. Hoff

"The transcription factors Uga3, Dal81 and Leu3 belong to the class III family (Zn(II)2Cys6 proteins), and they recognize highly related sequences rich in GGC triplets [15]."[1]

Human genes

Main article: Human genes

Gene expressions

Main article: Gene expressions

Interactions

Main article: Interaction gene transcriptions

Consensus sequences

Main article: Consensus sequence gene transcriptions

"Known consensus string Type of motifs LEU3 CCGNNNNCGG or GGCNNNNGCC Gapped motif".[2]

"MEME analysis identified phylogenetically conserved CCGN4CGG motifs in promoters of several [branched-chain amino acid] BCAA biosynthetic genes"[3]

"The promoters of the BCAA biosynthetic leuA and the iron-regulatory hapX genes contain an evolutionary conserved CCGN4CGG motif."[3]

"LeuB is able to bind to the CCGN4CGG motifs in the promoters of gdhA, hapX and leuA."[3]

Binding site for

Enhancer activity

Main article: Enhancer activity copy gene transcriptions

Promoter occurrences

Main article: Promoter occurrence gene transcriptions

"The regulatory regions of the UGA4 and UGA1 genes contain a UASGABA element (5'- AAAAACCGCCGGCGGCAAT-3') target of Uga3 and Dal81 factors. Within this element there is a consensus site for Leu3 [8, 10, 11, 35]. In contrast, UGA2 has a consensus site for Uga3 (5'-SGCGGNWTT-3') but not a defined UASGABA element or a Leu3 putative site."[1]

Hypotheses

Main article: Hypotheses
  1. A1BG has no regulatory elements in either promoter.
  2. A1BG is not transcribed by a regulatory element.
  3. No regulatory element participates in the transcription of A1BG.

Leu3 samplings

Copying a responsive elements consensus sequence CCGNNNNCGG and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence CCGNNNNCGG (starting with SuccessablesGGC.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for CCGNNNNCGG, 7, CCGAGTACGG at 4118, CCGTGTACGG at 2669, CCGAGTACGG at 2535, CCGAGTGCGG at 2208, CCGCCCACGG at 1255, CCGTGTGCGG at 964, CCGAGTGCGG at 664.
  2. positive strand, negative direction, looking for CCGNNNNCGG, 2, CCGGGTGCGG at 2197, CCGGGTGCGG at 380.
  3. negative strand, positive direction, looking for CCGNNNNCGG, 5, CCGAGTGCGG at 1170, CCGAGTGCGG at 1086, CCGACTGCGG at 1002, CCGAGTGCGG at 582, CCGCAGACGG at 399.
  4. positive strand, positive direction, looking for CCGNNNNCGG, 6, CCGAAGTCGG at 3998, CCGATATCGG at 3702, CCGCCAACGG at 3492, CCGCACTCGG at 2558, CCGCGTGCGG at 1302, CCGGAAGCGG at 595.

Leu3 (4560-2846) UTRs

Negative strand, negative direction: CCGAGTACGG at 4118.

Leu3 negative direction (2811-2596) proximal promoters

Negative strand, negative direction: CCGTGTACGG at 2669.

Leu3 negative direction (2596-1) distal promoters

  1. Negative strand, negative direction: CCGAGTACGG at 2535, CCGAGTGCGG at 2208, CCGCCCACGG at 1255, CCGTGTGCGG at 964, CCGAGTGCGG at 664.
  2. Positive strand, negative direction: CCGGGTGCGG at 2197, CCGGGTGCGG at 380.

Leu3 positive direction (4050-1) distal promoters

  1. Negative strand, positive direction: CCGAGTGCGG at 1170, CCGAGTGCGG at 1086, CCGACTGCGG at 1002, CCGAGTGCGG at 582, CCGCAGACGG at 399.
  2. Positive strand, positive direction: CCGAAGTCGG at 3998, CCGATATCGG at 3702, CCGCCAACGG at 3492, CCGCACTCGG at 2558, CCGCGTGCGG at 1302, CCGGAAGCGG at 595.

Leu3 random dataset samplings

  1. Leu3r0: 18, CCTTAACCGC at 4212, CCTTAACAGG at 3996, CCTGCTACGG at 3985, GCGCGCCCGC at 3889, CCGTATCAGG at 3862, GCTCGCCCGC at 3432, GCGCCGCAGG at 3244, CCGGATACGG at 3221, GCTATATAGG at 3012, GCGGATCCGC at 2670, CCTAGCCCGC at 1891, GCTACGAAGG at 1844, GCGGGTAAGG at 975, GCTGCCAAGG at 916, CCTTCTAAGG at 696, CCTGAGCAGC at 519, CCTGATGCGC at 354, CCTCCCCAGC at 32.
  2. Leu3r1: 18, CCGGCATCGG at 4476, GCGCATCCGG at 4304, CCTACCCCGG at 4295, CCGCATGAGC at 4286, CCGGCACAGG at 4140, CCGTTCACGG at 3912, CCTTTTCCGC at 3650, GCTGTATCGG at 3525, CCGAGGCAGC at 2925, CCTTACAAGC at 2889, GCTCAGCAGG at 2808, GCGGTGAAGG at 2557, GCTCGTGCGG at 2551, CCGCATACGC at 1359, CCGACAACGC at 963, CCTGTGCAGG at 644, CCGTGGTCGC at 579, GCGTTTCAGG at 552.
  3. Leu3r2: 16, GCGCCCCCGC at 4508, GCGGAGTAGG at 4455, GCGTCTTCGG at 4265, GCTTTTTAGG at 4107, GCTACGCCGG at 4021, CCTCTTCCGG at 3972, GCGGTAGCGG at 3748, GCGAAAAAGC at 3656, GCTTTCGAGC at 3421, GCTAATACGC at 1962, CCGGCTGAGG at 1913, CCTTCACAGC at 1799, CCGGGTTCGC at 1486, CCGGTTCCGC at 638, CCTGTGGCGG at 462, GCTTAGTCGG at 11.
  4. Leu3r3: 26, CCTACTACGC at 4273, CCGTTGACGC at 3962, GCGGACAAGG at 3931, CCTCGTCAGG at 3525, CCTGAATCGG at 3463, GCTTCGCCGG at 3423, CCTGCGGCGC at 3415, CCTATCTCGC at 3358, GCGATAACGC at 3233, GCTTAGGCGG at 3146, GCTGCACCGC at 3078, CCTCTTAAGG at 3035, CCTTCGCCGG at 2896, CCTGCTGCGG at 2716, CCGGTATAGC at 2372, CCTTCCCCGC at 1865, CCGGTCCAGG at 1588, CCTCAGGAGC at 1527, GCTGGCCAGC at 1498, CCGAACGAGC at 1401, GCGGTTCAGC at 860, CCTTTGGAGG at 738, CCGAACAAGG at 676, GCGGGCCAGG at 524, CCGAAGTAGG at 493, GCTGCCCAGC at 138.
  5. Leu3r4: 26, CCTACCCAGG at 4558, GCGTTTACGC at 4439, CCGGCTACGC at 4016, GCGGTCGCGG at 3555, CCTTGGGCGG at 3549, GCGGTTTAGC at 3472, CCTATTAAGG at 2936, GCGGAGGCGC at 2927, CCGGAGTCGC at 2825, GCTATTAAGC at 2352, CCTGACTCGC at 1983, GCTCGCTAGC at 1889, GCGGGCGAGG at 1880, GCGCTCCAGC at 1241, GCGCCGCCGC at 1091, CCTTTCGCGC at 1085, CCTTATAAGC at 1046, CCGGCGCAGC at 1030, CCGCCGGCGC at 1027, CCGCCGGAGC at 881, CCGCCGGAGG at 507, CCGGGGCCGG at 354, GCTAAAGCGG at 217, CCGCTAAAGC at 215, CCTTTAGCGC at 195, CCGCGCCAGC at 22.
  6. Leu3r5: 23, GCTTTGCCGG at 4446, CCGGGGTAGC at 4431, CCTTGGCCGG at 4425, CCTACCGCGC at 4412, CCTCAGCCGC at 4352, GCTCGGTAGG at 3890, GCGGTTGCGG at 3751, CCTTATAAGG at 3585, CCTGTGTAGG at 3555, GCTTGCACGC at 3471, CCGGACCCGG at 3028, CCTTTTCCGC at 2359, CCGAGAACGC at 2327, CCGGGGGCGG at 2034, GCGCATACGC at 1510, GCGAGGGAGG at 1395, CCTTCACAGC at 1284, CCTGATCAGC at 1122, GCGCTACCGG at 604, GCGGCCGCGC at 598, CCGCGGTAGG at 404, CCGAGTTAGG at 303, CCGAGTAAGC at 16.
  7. Leu3r6: 19, CCGATAAAGG at 3793, CCTAAAAAGC at 3423, CCGACGCCGG at 3412, CCTTGCCAGC at 3403, CCGCCACCGC at 3324, GCGCCCCCGC at 3318, CCTGCTCAGG at 3246, GCTAGACAGC at 2989, GCTTTAGAGC at 2505, GCTTCTGCGC at 1966, GCTGAGGAGG at 1909, GCGGTAGCGG at 1560, GCGCTTTCGG at 1474, GCTGTCCAGG at 1465, CCTCCGGAGG at 1158, GCGCCTCCGG at 1155, GCGATCGCGG at 1016, GCGCGATCGC at 1014, CCTGCCAAGG at 56.
  8. Leu3r7: 16, GCGTTTACGG at 4014, GCGGTGCCGG at 3942, GCGGAAAAGC at 3885, CCGTAATCGG at 3845, CCTAAGTCGC at 3741, GCTACGAAGG at 3706, CCGGATAAGG at 3426, CCTTGGCCGG at 3301, CCGCCCGCGG at 2747, GCGACTCCGC at 2741, GCGAGGAAGG at 2434, GCGGGCGAGG at 2430, CCGACAGCGG at 2424, GCTCGGGAGG at 1918, GCTCGTCCGG at 1385, CCGTTCCAGG at 831.
  9. Leu3r8: 15, CCTAGAAAGG at 4271, CCGGTACCGG at 3734, CCGGGACCGG at 3728, CCTTCTTCGG at 3296, CCTTAAGAGG at 3272, CCTACTGAGC at 3026, CCTATAGCGG at 2753, CCGCCCCAGG at 2478, CCGAGGGAGG at 2021, CCGCCCGAGG at 2017, GCGCTTTCGG at 1654, CCGCTTGAGG at 1630, CCTGAAGCGG at 1190, CCTGGGCAGG at 1020, GCGCTGCCGG at 682.
  10. Leu3r9: 19, GCGGTATCGG at 4459, CCGCCCGAGC at 4451, GCTAGAAAGG at 4317, CCGCTACAGC at 4109, GCTAGTCAGC at 3360, CCGTAGTCGG at 2936, GCTCCTACGC at 2879, CCGACTTCGG at 2772, GCGCTTGAGG at 2168, CCTGACGAGG at 1593, CCTAGAGAGG at 1577, CCTTTGTCGG at 1271, GCTGGTACGG at 1217, CCTACTAAGC at 988, GCGCCGACGG at 978, GCTAAAACGG at 895, GCGAAAGCGG at 886, CCGGGTTAGG at 602, CCTAGGCCGC at 568.

Leu3r arbitrary (evens) (4560-2846) UTRs

  1. Leu3r0: CCTTAACCGC at 4212, CCTTAACAGG at 3996, CCTGCTACGG at 3985, GCGCGCCCGC at 3889, CCGTATCAGG at 3862, GCTCGCCCGC at 3432, GCGCCGCAGG at 3244, CCGGATACGG at 3221, GCTATATAGG at 3012.
  2. Leu3r2: GCGCCCCCGC at 4508, GCGGAGTAGG at 4455, GCGTCTTCGG at 4265, GCTTTTTAGG at 4107, GCTACGCCGG at 4021, CCTCTTCCGG at 3972, GCGGTAGCGG at 3748, GCGAAAAAGC at 3656, GCTTTCGAGC at 3421.
  3. Leu3r4: CCTACCCAGG at 4558, GCGTTTACGC at 4439, CCGGCTACGC at 4016, GCGGTCGCGG at 3555, CCTTGGGCGG at 3549, GCGGTTTAGC at 3472, CCTATTAAGG at 2936, GCGGAGGCGC at 2927.
  4. Leu3r6: CCGATAAAGG at 3793, CCTAAAAAGC at 3423, CCGACGCCGG at 3412, CCTTGCCAGC at 3403, CCGCCACCGC at 3324, GCGCCCCCGC at 3318, CCTGCTCAGG at 3246, GCTAGACAGC at 2989.
  5. Leu3r8: CCTAGAAAGG at 4271, CCGGTACCGG at 3734, CCGGGACCGG at 3728, CCTTCTTCGG at 3296, CCTTAAGAGG at 3272, CCTACTGAGC at 3026.

Leu3r alternate (odds) (4560-2846) UTRs

  1. Leu3r1: CCGGCATCGG at 4476, GCGCATCCGG at 4304, CCTACCCCGG at 4295, CCGCATGAGC at 4286, CCGGCACAGG at 4140, CCGTTCACGG at 3912, CCTTTTCCGC at 3650, GCTGTATCGG at 3525, CCGAGGCAGC at 2925, CCTTACAAGC at 2889.
  2. Leu3r3: CCTACTACGC at 4273, CCGTTGACGC at 3962, GCGGACAAGG at 3931, CCTCGTCAGG at 3525, CCTGAATCGG at 3463, GCTTCGCCGG at 3423, CCTGCGGCGC at 3415, CCTATCTCGC at 3358, GCGATAACGC at 3233, GCTTAGGCGG at 3146, GCTGCACCGC at 3078, CCTCTTAAGG at 3035, CCTTCGCCGG at 2896.
  3. Leu3r5: GCTTTGCCGG at 4446, CCGGGGTAGC at 4431, CCTTGGCCGG at 4425, CCTACCGCGC at 4412, CCTCAGCCGC at 4352, GCTCGGTAGG at 3890, GCGGTTGCGG at 3751, CCTTATAAGG at 3585, CCTGTGTAGG at 3555, GCTTGCACGC at 3471, CCGGACCCGG at 3028.
  4. Leu3r7: GCGTTTACGG at 4014, GCGGTGCCGG at 3942, GCGGAAAAGC at 3885, CCGTAATCGG at 3845, CCTAAGTCGC at 3741, GCTACGAAGG at 3706, CCGGATAAGG at 3426, CCTTGGCCGG at 3301.
  5. Leu3r9: GCGGTATCGG at 4459, CCGCCCGAGC at 4451, GCTAGAAAGG at 4317, CCGCTACAGC at 4109, GCTAGTCAGC at 3360, CCGTAGTCGG at 2936, GCTCCTACGC at 2879.

Leu3r arbitrary negative direction (evens) (2846-2811) core promoters

  1. Leu3r4: CCGGAGTCGC at 2825.

Leu3r arbitrary positive direction (odds) (4445-4265) core promoters

  1. Leu3r1: GCGCATCCGG at 4304, CCTACCCCGG at 4295, CCGCATGAGC at 4286.
  2. Leu3r3: CCTACTACGC at 4273.
  3. Leu3r5: CCGGGGTAGC at 4431, CCTTGGCCGG at 4425, CCTACCGCGC at 4412, CCTCAGCCGC at 4352.
  4. Leu3r9: GCTAGAAAGG at 4317.

Leu3r alternate positive direction (evens) (4445-4265) core promoters

  1. Leu3r2: GCGTCTTCGG at 4265.
  2. Leu3r4: GCGTTTACGC at 4439.
  3. Leu3r8: CCTAGAAAGG at 4271.

Leu3r arbitrary negative direction (evens) (2811-2596) proximal promoters

  1. Leu3r0: GCGGATCCGC at 2670.
  2. Leu3r8: CCTATAGCGG at 2753.

Leu3r alternate negative direction (odds) (2811-2596) proximal promoters

  1. Leu3r1: GCTCAGCAGG at 2808.
  2. Leu3r3: CCTGCTGCGG at 2716.
  3. Leu3r7: CCGCCCGCGG at 2747, GCGACTCCGC at 2741.
  4. Leu3r9: CCGACTTCGG at 2772.

Leu3r arbitrary positive direction (odds) (4265-4050) proximal promoters

  1. Leu3r1: CCGGCACAGG at 4140.
  2. Leu3r9: CCGCTACAGC at 4109.

Leu3r alternate positive direction (evens) (4265-4050) proximal promoters

  1. Leu3r0: CCTTAACCGC at 4212.
  2. Leu3r2: GCGTCTTCGG at 4265, GCTTTTTAGG at 4107.

Leu3r arbitrary negative direction (evens) (2596-1) distal promoters

  1. Leu3r0: CCTAGCCCGC at 1891, GCTACGAAGG at 1844, GCGGGTAAGG at 975, GCTGCCAAGG at 916, CCTTCTAAGG at 696, CCTGAGCAGC at 519, CCTGATGCGC at 354, CCTCCCCAGC at 32.
  2. Leu3r2: GCTAATACGC at 1962, CCGGCTGAGG at 1913, CCTTCACAGC at 1799, CCGGGTTCGC at 1486, CCGGTTCCGC at 638, CCTGTGGCGG at 462, GCTTAGTCGG at 11.
  3. Leu3r4: GCTATTAAGC at 2352, CCTGACTCGC at 1983, GCTCGCTAGC at 1889, GCGGGCGAGG at 1880, GCGCTCCAGC at 1241, GCGCCGCCGC at 1091, CCTTTCGCGC at 1085, CCTTATAAGC at 1046, CCGGCGCAGC at 1030, CCGCCGGCGC at 1027, CCGCCGGAGC at 881, CCGCCGGAGG at 507, CCGGGGCCGG at 354, GCTAAAGCGG at 217, CCGCTAAAGC at 215, CCTTTAGCGC at 195, CCGCGCCAGC at 22.
  4. Leu3r6: GCTTTAGAGC at 2505, GCTTCTGCGC at 1966, GCTGAGGAGG at 1909, GCGGTAGCGG at 1560, GCGCTTTCGG at 1474, GCTGTCCAGG at 1465, CCTCCGGAGG at 1158, GCGCCTCCGG at 1155, GCGATCGCGG at 1016, GCGCGATCGC at 1014, CCTGCCAAGG at 56.
  5. Leu3r8: CCGCCCCAGG at 2478, CCGAGGGAGG at 2021, CCGCCCGAGG at 2017, GCGCTTTCGG at 1654, CCGCTTGAGG at 1630, CCTGAAGCGG at 1190, CCTGGGCAGG at 1020, GCGCTGCCGG at 682.

Leu3r alternate negative direction (odds) (2596-1) distal promoters

  1. Leu3r1: GCGGTGAAGG at 2557, GCTCGTGCGG at 2551, CCGCATACGC at 1359, CCGACAACGC at 963, CCTGTGCAGG at 644, CCGTGGTCGC at 579, GCGTTTCAGG at 552.
  2. Leu3r3: CCGGTATAGC at 2372, CCTTCCCCGC at 1865, CCGGTCCAGG at 1588, CCTCAGGAGC at 1527, GCTGGCCAGC at 1498, CCGAACGAGC at 1401, GCGGTTCAGC at 860, CCTTTGGAGG at 738, CCGAACAAGG at 676, GCGGGCCAGG at 524, CCGAAGTAGG at 493, GCTGCCCAGC at 138.
  3. Leu3r5: CCTTTTCCGC at 2359, CCGAGAACGC at 2327, CCGGGGGCGG at 2034, GCGCATACGC at 1510, GCGAGGGAGG at 1395, CCTTCACAGC at 1284, CCTGATCAGC at 1122, GCGCTACCGG at 604, GCGGCCGCGC at 598, CCGCGGTAGG at 404, CCGAGTTAGG at 303, CCGAGTAAGC at 16.
  4. Leu3r7: GCGAGGAAGG at 2434, GCGGGCGAGG at 2430, CCGACAGCGG at 2424, GCTCGGGAGG at 1918, GCTCGTCCGG at 1385, CCGTTCCAGG at 831.
  5. Leu3r9: GCGCTTGAGG at 2168, CCTGACGAGG at 1593, CCTAGAGAGG at 1577, CCTTTGTCGG at 1271, GCTGGTACGG at 1217, CCTACTAAGC at 988, GCGCCGACGG at 978, GCTAAAACGG at 895, GCGAAAGCGG at 886, CCGGGTTAGG at 602, CCTAGGCCGC at 568.

Leu3r arbitrary positive direction (odds) (4050-1) distal promoters

  1. Leu3r1: CCGTTCACGG at 3912, CCTTTTCCGC at 3650, GCTGTATCGG at 3525, CCGAGGCAGC at 2925, CCTTACAAGC at 2889, GCTCAGCAGG at 2808, GCGGTGAAGG at 2557, GCTCGTGCGG at 2551, CCGCATACGC at 1359, CCGACAACGC at 963, CCTGTGCAGG at 644, CCGTGGTCGC at 579, GCGTTTCAGG at 552.
  2. Leu3r3: CCGTTGACGC at 3962, GCGGACAAGG at 3931, CCTCGTCAGG at 3525, CCTGAATCGG at 3463, GCTTCGCCGG at 3423, CCTGCGGCGC at 3415, CCTATCTCGC at 3358, GCGATAACGC at 3233, GCTTAGGCGG at 3146, GCTGCACCGC at 3078, CCTCTTAAGG at 3035, CCTTCGCCGG at 2896, CCTGCTGCGG at 2716, CCGGTATAGC at 2372, CCTTCCCCGC at 1865, CCGGTCCAGG at 1588, CCTCAGGAGC at 1527, GCTGGCCAGC at 1498, CCGAACGAGC at 1401, GCGGTTCAGC at 860, CCTTTGGAGG at 738, CCGAACAAGG at 676, GCGGGCCAGG at 524, CCGAAGTAGG at 493, GCTGCCCAGC at 138.
  3. Leu3r5: GCTCGGTAGG at 3890, GCGGTTGCGG at 3751, CCTTATAAGG at 3585, CCTGTGTAGG at 3555, GCTTGCACGC at 3471, CCGGACCCGG at 3028, CCTTTTCCGC at 2359, CCGAGAACGC at 2327, CCGGGGGCGG at 2034, GCGCATACGC at 1510, GCGAGGGAGG at 1395, CCTTCACAGC at 1284, CCTGATCAGC at 1122, GCGCTACCGG at 604, GCGGCCGCGC at 598, CCGCGGTAGG at 404, CCGAGTTAGG at 303, CCGAGTAAGC at 16.
  4. Leu3r7: GCGTTTACGG at 4014, GCGGTGCCGG at 3942, GCGGAAAAGC at 3885, CCGTAATCGG at 3845, CCTAAGTCGC at 3741, GCTACGAAGG at 3706, CCGGATAAGG at 3426, CCTTGGCCGG at 3301, CCGCCCGCGG at 2747, GCGACTCCGC at 2741, GCGAGGAAGG at 2434, GCGGGCGAGG at 2430, CCGACAGCGG at 2424, GCTCGGGAGG at 1918, GCTCGTCCGG at 1385, CCGTTCCAGG at 831.
  5. Leu3r9: GCTAGTCAGC at 3360, CCGTAGTCGG at 2936, GCTCCTACGC at 2879, CCGACTTCGG at 2772, GCGCTTGAGG at 2168, CCTGACGAGG at 1593, CCTAGAGAGG at 1577, CCTTTGTCGG at 1271, GCTGGTACGG at 1217, CCTACTAAGC at 988, GCGCCGACGG at 978, GCTAAAACGG at 895, GCGAAAGCGG at 886, CCGGGTTAGG at 602, CCTAGGCCGC at 568.

Leu3r alternate positive direction (evens) (4050-1) distal promoters

  1. Leu3r0: CCTTAACAGG at 3996, CCTGCTACGG at 3985, GCGCGCCCGC at 3889, CCGTATCAGG at 3862, GCTCGCCCGC at 3432, GCGCCGCAGG at 3244, CCGGATACGG at 3221, GCTATATAGG at 3012, GCGGATCCGC at 2670, CCTAGCCCGC at 1891, GCTACGAAGG at 1844, GCGGGTAAGG at 975, GCTGCCAAGG at 916, CCTTCTAAGG at 696, CCTGAGCAGC at 519, CCTGATGCGC at 354, CCTCCCCAGC at 32.
  2. Leu3r2: GCTACGCCGG at 4021, CCTCTTCCGG at 3972, GCGGTAGCGG at 3748, GCGAAAAAGC at 3656, GCTTTCGAGC at 3421, GCTAATACGC at 1962, CCGGCTGAGG at 1913, CCTTCACAGC at 1799, CCGGGTTCGC at 1486, CCGGTTCCGC at 638, CCTGTGGCGG at 462, GCTTAGTCGG at 11.
  3. Leu3r4: CCGGCTACGC at 4016, GCGGTCGCGG at 3555, CCTTGGGCGG at 3549, GCGGTTTAGC at 3472, CCTATTAAGG at 2936, GCGGAGGCGC at 2927, CCGGAGTCGC at 2825, GCTATTAAGC at 2352, CCTGACTCGC at 1983, GCTCGCTAGC at 1889, GCGGGCGAGG at 1880, GCGCTCCAGC at 1241, GCGCCGCCGC at 1091, CCTTTCGCGC at 1085, CCTTATAAGC at 1046, CCGGCGCAGC at 1030, CCGCCGGCGC at 1027, CCGCCGGAGC at 881, CCGCCGGAGG at 507, CCGGGGCCGG at 354, GCTAAAGCGG at 217, CCGCTAAAGC at 215, CCTTTAGCGC at 195, CCGCGCCAGC at 22.
  4. Leu3r6: CCGATAAAGG at 3793, CCTAAAAAGC at 3423, CCGACGCCGG at 3412, CCTTGCCAGC at 3403, CCGCCACCGC at 3324, GCGCCCCCGC at 3318, CCTGCTCAGG at 3246, GCTAGACAGC at 2989, GCTTTAGAGC at 2505, GCTTCTGCGC at 1966, GCTGAGGAGG at 1909, GCGGTAGCGG at 1560, GCGCTTTCGG at 1474, GCTGTCCAGG at 1465, CCTCCGGAGG at 1158, GCGCCTCCGG at 1155, GCGATCGCGG at 1016, GCGCGATCGC at 1014, CCTGCCAAGG at 56.
  5. Leu3r8: CCGGTACCGG at 3734, CCGGGACCGG at 3728, CCTTCTTCGG at 3296, CCTTAAGAGG at 3272, CCTACTGAGC at 3026, CCTATAGCGG at 2753, CCGCCCCAGG at 2478, CCGAGGGAGG at 2021, CCGCCCGAGG at 2017, GCGCTTTCGG at 1654, CCGCTTGAGG at 1630, CCTGAAGCGG at 1190, CCTGGGCAGG at 1020, GCGCTGCCGG at 682.

Leu3 analysis and results

Main article: Complex locus A1BG and ZNF497 § Leu3

"Known consensus string Type of motifs LEU3 CCGNNNNCGG or GGCNNNNGCC Gapped motif".[2]

Reals or randoms Promoters direction Numbers Strands Occurrences Averages (± 0.1)
Reals UTR negative 1 2 0.5 0.5
Randoms UTR arbitrary negative 40 10 4.0 4.45
Randoms UTR alternate negative 49 10 4.9 4.45
Reals Core negative 0 2 0 0
Randoms Core arbitrary negative 1 10 0.1 0.05
Randoms Core alternate negative 0 10 0 0.05
Reals Core positive 0 2 0 0
Randoms Core arbitrary positive 9 10 0.9 0.6
Randoms Core alternate positive 3 10 0.3 0.6
Reals Proximal negative 1 2 0.5 0.5
Randoms Proximal arbitrary negative 2 10 0.2 0.35
Randoms Proximal alternate negative 5 10 0.5 0.35
Reals Proximal positive 0 2 0 0
Randoms Proximal arbitrary positive 2 10 0.2 0.25
Randoms Proximal alternate positive 3 10 0.3 0.25
Reals Distal negative 7 2 3.5 3.5 ± 1.5 (--5,+-2)
Randoms Distal arbitrary negative 51 10 5.1 4.95
Randoms Distal alternate negative 48 10 4.8 4.95
Reals Distal positive 11 2 5.5 5.5 ± 0.5 (-+5,++6)
Randoms Distal arbitrary positive 87 10 8.7 8.65
Randoms Distal alternate positive 86 10 8.6 8.65

Comparison:

The occurrences of real Leu3 UTRs are less than the randoms, negative proximals and distals overlap the high randoms, and positive distals are less than the randoms. This suggests that the real Leu3s are likely active or activable.

GGCGGC triplet samplings

  1. Negative strand, negative direction, looking for GGCGGC, 0.
  2. Positive strand, negative direction, looking for GGCGGC, 1, GGCGGC at 1753.
  3. Negative strand, positive direction, looking for GGCGGC, 3, GGCGGC at 1902, GGCGGC at 1794, GGCGGC at 354.
  4. Positive strand, positive direction, looking for GGCGGC, 0.
  5. inverse complement, negative strand, negative direction, looking for GCCGCC, 1, GCCGCC at 2727.
  6. inverse complement, positive strand, negative direction, looking for GCCGCC, 0.
  7. inverse complement, negative strand, positive direction, looking for GCCGCC, 2, GCCGCC at 1757, GCCGCC at 904.
  8. inverse complement, positive strand, positive direction, looking for GCCGCC, 1, GCCGCC at 356.

GGCGGC negative direction (2811-2596) proximal promoters

  1. Negative strand, negative direction: GCCGCC at 2727.

GGCGGC negative direction (2596-1) distal promoters

  1. Positive strand, negative direction: GGCGGC at 1753.

GGCGGC positive direction (4050-1) distal promoters

  1. Negative strand, positive direction: GGCGGC at 1902, GGCGGC at 1794, GCCGCC at 1757, GCCGCC at 904, GGCGGC at 354.
  2. Positive strand, positive direction: GCCGCC at 356.

GGCGGC random dataset samplings

  1. GGCr0: 1, GGCGGC at 3547.
  2. GGCr1: 0.
  3. GGCr2: 1, GGCGGC at 4348.
  4. GGCr3: 1, GGCGGC at 1442.
  5. GGCr4: 1, GGCGGC at 4109.
  6. GGCr5: 2, GGCGGC at 2932, GGCGGC at 678.
  7. GGCr6: 1, GGCGGC at 4434.
  8. GGCr7: 0.
  9. GGCr8: 1, GGCGGC at 4280.
  10. GGCr9: 3, GGCGGC at 3896, GGCGGC at 3628, GGCGGC at 1727.
  11. GGCr0ci: 3, GCCGCC at 3407, GCCGCC at 2380, GCCGCC at 1384.
  12. GGCr1ci: 0.
  13. GGCr2ci: 3, GCCGCC at 3586, GCCGCC at 2598, GCCGCC at 1966.
  14. GGCr3ci: 3, GCCGCC at 4138, GCCGCC at 2792, GCCGCC at 1452.
  15. GGCr4ci: 4, GCCGCC at 1092, GCCGCC at 1089, GCCGCC at 1022, GCCGCC at 80.
  16. GGCr5ci: 1, GCCGCC at 4353.
  17. GGCr6ci: 0.
  18. GGCr7ci: 1, GCCGCC at 1770.
  19. GGCr8ci: 2, GCCGCC at 2518, GCCGCC at 2473.
  20. GGCr9ci: 3, GCCGCC at 2666, GCCGCC at 2449, GCCGCC at 1415.

GGCr arbitrary (evens) (4560-2846) UTRs

  1. GGCr0: GGCGGC at 3547.
  2. GGCr2: GGCGGC at 4348.
  3. GGCr4: GGCGGC at 4109.
  4. GGCr6: GGCGGC at 4434.
  5. GGCr8: GGCGGC at 4280.
  6. GGCr0ci: GCCGCC at 3407.
  7. GGCr2ci: GCCGCC at 3586.

GGCr alternate (odds) (4560-2846) UTRs

  1. GGCr5: GGCGGC at 2932.
  2. GGCr9: GGCGGC at 3896, GGCGGC at 3628.
  3. GGCr3ci: GCCGCC at 4138.
  4. GGCr5ci: GCCGCC at 4353.

GGCr arbitrary positive direction (odds) (4445-4265) core promoters

  1. GGCr5ci: GCCGCC at 4353.

GGCr alternate positive direction (evens) (4445-4265) core promoters

  1. GGCr2: GGCGGC at 4348.
  2. GGCr6: GGCGGC at 4434.
  3. GGCr8: GGCGGC at 4280.

GGCr arbitrary negative direction (evens) (2811-2596) proximal promoters

  1. GGCr2ci: GCCGCC at 2598.

GGCr alternate negative direction (odds) (2811-2596) proximal promoters

  1. GGCr3ci: GCCGCC at 2792.
  2. GGCr9ci: GCCGCC at 2666.

GGCr arbitrary positive direction (odds) (4265-4050) proximal promoters

  1. GGCr3ci: GCCGCC at 4138.

GGCr alternate positive direction (evens) (4265-4050) proximal promoters

  1. GGCr4: GGCGGC at 4109.

GGCr arbitrary negative direction (evens) (2596-1) distal promoters

  1. GGCr0ci: GCCGCC at 2380, GCCGCC at 1384.
  2. GGCr2ci: GCCGCC at 1966.
  3. GGCr4ci: 4, GCCGCC at 1092, GCCGCC at 1089, GCCGCC at 1022, GCCGCC at 80.
  4. GGCr8ci: GCCGCC at 2518, GCCGCC at 2473.

GGCr alternate negative direction (odds) (2596-1) distal promoters

  1. GGCr3: GGCGGC at 1442.
  2. GGCr5: GGCGGC at 678.
  3. GGCr9: GGCGGC at 1727.
  4. GGCr3ci: GCCGCC at 1452.
  5. GGCr7ci: GCCGCC at 1770.
  6. GGCr9ci: GCCGCC at 2449, GCCGCC at 1415.

GGCr arbitrary positive direction (odds) (4050-1) distal promoters

  1. GGCr3: GGCGGC at 1442.
  2. GGCr5: GGCGGC at 2932, GGCGGC at 678.
  3. GGCr9: GGCGGC at 3896, GGCGGC at 3628, GGCGGC at 1727.
  4. GGCr3ci: GCCGCC at 2792, GCCGCC at 1452.
  5. GGCr7ci: GCCGCC at 1770.
  6. GGCr9ci: GCCGCC at 2666, GCCGCC at 2449, GCCGCC at 1415.

GGCr alternate positive direction (evens) (4050-1) distal promoters

  1. GGCr0: GGCGGC at 3547.
  2. GGCr0ci: GCCGCC at 3407, GCCGCC at 2380, GCCGCC at 1384.
  3. GGCr2ci: GCCGCC at 3586, GCCGCC at 2598, GCCGCC at 1966.
  4. GGCr4ci: GCCGCC at 1092, GCCGCC at 1089, GCCGCC at 1022, GCCGCC at 80.
  5. GGCr8ci: GCCGCC at 2518, GCCGCC at 2473.

GGCGGC analysis and results

Main article: Complex locus A1BG and ZNF497 § GGCGGC triplets

"The transcription factors Uga3, Dal81 and Leu3 belong to the class III family (Zn(II)2Cys6 proteins), and they recognize highly related sequences rich in GGC triplets [15]."[1]

Reals or randoms Promoters direction Numbers Strands Occurrences Averages (± 0.1)
Reals UTR negative 0 2 0 0
Randoms UTR arbitrary negative 7 10 0.7 0.6
Randoms UTR alternate negative 5 10 0.5 0.6
Reals Core negative 0 2 0 0
Randoms Core arbitrary negative 0 10 0 0
Randoms Core alternate negative 0 10 0 0
Reals Core positive 0 2 0 0
Randoms Core arbitrary positive 1 10 0.1 0.2
Randoms Core alternate positive 3 10 0.3 0.2
Reals Proximal negative 1 2 0.5 0.5 ± 0.5 (--1,+-0)
Randoms Proximal arbitrary negative 1 10 0.1 0.15
Randoms Proximal alternate negative 2 10 0.2 0.15
Reals Proximal positive 0 2 0 0
Randoms Proximal arbitrary positive 1 10 0.1 0.1
Randoms Proximal alternate positive 1 10 0.1 0.1
Reals Distal negative 1 2 0.5 0.5 ± 0.5 (--0,+-1)
Randoms Distal arbitrary negative 9 10 0.9 0.8
Randoms Distal alternate negative 7 10 0.7 0.8
Reals Distal positive 6 2 3 3 ± 2 (-+5,++1)
Randoms Distal arbitrary positive 12 10 1.2 1.25
Randoms Distal alternate positive 13 10 1.3 1.25

Comparison:

The occurrences of real GGC proximals and negative distals are greater than the randoms, positive distals are outside the randoms. This suggests that the real GGCs are likely active or activable.

GGC samplings

Copying a responsive elements consensus sequence GGC and putting the sequence in "⌘F" finds 145 + 57 between ZNF497 and A1BG or 17 + 121 between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence GGC (starting with SuccessablesGGCM.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for GGC, 17, GGC at 4323, GGC at 3874, GGC at 2408, GGC at 2353, GGC at 2316, GGC at 2190, GGC at 1982, GGC at 1508, GGC at 1501, GGC at 1329, GGC at 1237, GGC at 1217, GGC at 1154, GGC at 1038, GGC at 751, GGC at 512, GGC at 373.
  2. positive strand, negative direction, looking for GGC, 121, GGC at 4279, GGC at 4273, GGC at 4254, GGC at 4239, GGC at 4190, GGC at 4166, GGC at 4142, GGC at 4111, GGC at 4103, GGC at 4098, GGC at 4039, GGC at 3997, GGC at 3991, GGC at 3960, GGC at 3947, GGC at 3927, GGC at 3896, GGC at 3872, GGC at 3716, GGC at 3629, GGC at 3612, GGC at 3597, GGC at 3586, GGC at 3574, GGC at 3566, GGC at 3475, GGC at 3448, GGC at 3442, GGC at 3397, GGC at 3300, GGC at 3227, GGC at 3221, GGC at 3129, GGC at 3088, GGC at 3082, GGC at 3051, GGC at 3043, GGC at 3038, GGC at 3005, GGC at 2907, GGC at 2772, GGC at 2725, GGC at 2722, GGC at 2693, GGC at 2662, GGC at 2606, GGC at 2565, GGC at 2559, GGC at 2528, GGC at 2520, GGC at 2515, GGC at 2437, GGC at 2390, GGC at 2386, GGC at 2364, GGC at 2358, GGC at 2319, GGC at 2229, GGC at 2223, GGC at 2201, GGC at 2153, GGC at 2106, GGC at 2073, GGC at 2066, GGC at 2011, GGC at 1964, GGC at 1949, GGC at 1938, GGC at 1905, GGC at 1893, GGC at 1842, GGC at 1820, GGC at 1807, GGC at 1797, GGC at 1766, GGC at 1758, GGC at 1753, GGC at 1750, GGC at 1743, GGC at 1557, GGC at 1461, GGC at 1358, GGC at 1311, GGC at 1285, GGC at 1279, GGC at 1248, GGC at 1240, GGC at 1199, GGC at 1121, GGC at 1113, GGC at 1108, GGC at 1020, GGC at 994, GGC at 988, GGC at 957, GGC at 954, GGC at 949, GGC at 901, GGC at 854, GGC at 828, GGC at 822, GGC at 698, GGC at 694, GGC at 688, GGC at 657, GGC at 649, GGC at 644, GGC at 597, GGC at 562, GGC at 552, GGC at 515, GGC at 510, GGC at 461, GGC at 451, GGC at 425, GGC at 415, GGC at 384, GGC at 371, GGC at 263, GGC at 120, GGC at 89.
  3. negative strand, positive direction, looking for GGC, 148, GGC at 4437, GGC at 4427, GGC at 4402, GGC at 4303, GGC at 4226, GGC at 4189, GGC at 4179, GGC at 4003, GGC at 3991, GGC at 3982, GGC at 3907, GGC at 3754, GGC at 3695, GGC at 3688, GGC at 3680, GGC at 3675, GGC at 3659, GGC at 3637, GGC at 3585, GGC at 3523, GGC at 3498, GGC at 3485, GGC at 3480, GGC at 3470, GGC at 3406, GGC at 3346, GGC at 3118, GGC at 3035, GGC at 2989, GGC at 2984, GGC at 2912, GGC at 2893, GGC at 2884, GGC at 2877, GGC at 2807, GGC at 2767, GGC at 2694, GGC at 2570, GGC at 2551, GGC at 2503, GGC at 2483, GGC at 2434, GGC at 2367, GGC at 2317, GGC at 2293, GGC at 2186, GGC at 2160, GGC at 2116, GGC at 2068, GGC at 1993, GGC at 1972, GGC at 1944, GGC at 1917, GGC at 1906, GGC at 1902, GGC at 1899, GGC at 1881, GGC at 1856, GGC at 1847, GGC at 1816, GGC at 1794, GGC at 1791, GGC at 1766, GGC at 1753, GGC at 1737, GGC at 1716, GGC at 1699, GGC at 1645, GGC at 1637, GGC at 1582, GGC at 1568, GGC at 1561, GGC at 1547, GGC at 1512, GGC at 1484, GGC at 1477, GGC at 1438, GGC at 1428, GGC at 1423, GGC at 1384, GGC at 1377, GGC at 1338, GGC at 1328, GGC at 1323, GGC at 1295, GGC at 1260, GGC at 1255, GGC at 1225, GGC at 1211, GGC at 1200, GGC at 1189, GGC at 1176, GGC at 1171, GGC at 1148, GGC at 1092, GGC at 1043, GGC at 1034, GGC at 1028, GGC at 1023, GGC at 1008, GGC at 1003, GGC at 980, GGC at 973, GGC at 948, GGC at 924, GGC at 919, GGC at 880, GGC at 873, GGC at 848, GGC at 824, GGC at 819, GGC at 763, GGC at 751, GGC at 721, GGC at 672, GGC at 667, GGC at 637, GGC at 588, GGC at 583, GGC at 553, GGC at 539, GGC at 517, GGC at 504, GGC at 499, GGC at 478, GGC at 444, GGC at 419, GGC at 414, GGC at 404, GGC at 388, GGC at 376, GGC at 370, GGC at 354, GGC at 351, GGC at 332, GGC at 325, GGC at 315, GGC at 282, GGC at 274, GGC at 261, GGC at 247, GGC at 211, GGC at 198, GGC at 158, GGC at 91, GGC at 26, GGC at 19, GGC at 9.
  4. positive strand, positive direction, looking for GGC, 58, GGC at 4344, GGC at 4289, GGC at 4276, GGC at 4243, GGC at 4236, GGC at 4001, GGC at 3912, GGC at 3810, GGC at 3798, GGC at 3556, GGC at 3324, GGC at 3225, GGC at 3200, GGC at 2562, GGC at 2354, GGC at 2214, GGC at 2149, GGC at 1961, GGC at 1845, GGC at 1758, GGC at 1755, GGC at 1664, GGC at 1647, GGC at 1608, GGC at 1545, GGC at 1486, GGC at 1445, GGC at 1434, GGC at 1386, GGC at 1345, GGC at 1334, GGC at 1293, GGC at 1209, GGC at 1163, GGC at 1098, GGC at 1079, GGC at 1041, GGC at 995, GGC at 950, GGC at 909, GGC at 902, GGC at 895, GGC at 850, GGC at 809, GGC at 789, GGC at 765, GGC at 742, GGC at 735, GGC at 678, GGC at 575, GGC at 562, GGC at 483, GGC at 475, GGC at 441, GGC at 392, GGC at 374, GGC at 307, GGC at 74.
  5. inverse complement, negative strand, negative direction, looking for GCC, 29, GCC at 4324, GCC at 3999, GCC at 3596, GCC at 3090, GCC at 2727, GCC at 2724, GCC at 2524, GCC at 2454, GCC at 2392, GCC at 2354, GCC at 2317, GCC at 2231, GCC at 2197, GCC at 2191, GCC at 1809, GCC at 1762, GCC at 1752, GCC at 1680, GCC at 1250, GCC at 1238, GCC at 956, GCC at 865, GCC at 856, GCC at 700, GCC at 653, GCC at 513, GCC at 427, GCC at 380, GCC at 374.
  6. inverse complement, positive strand, negative direction, looking for GCC, 79, GCC at 4521, GCC at 4490, GCC at 4481, GCC at 4440, GCC at 4412, GCC at 4346, GCC at 4322, GCC at 4297, GCC at 4249, GCC at 4230, GCC at 4167, GCC at 4118, GCC at 4099, GCC at 4034, GCC at 4015, GCC at 3948, GCC at 3928, GCC at 3881, GCC at 3873, GCC at 3852, GCC at 3839, GCC at 3727, GCC at 3683, GCC at 3575, GCC at 3567, GCC at 3561, GCC at 3295, GCC at 3281, GCC at 3270, GCC at 3205, GCC at 3197, GCC at 3130, GCC at 3125, GCC at 2767, GCC at 2753, GCC at 2669, GCC at 2651, GCC at 2607, GCC at 2535, GCC at 2516, GCC at 2432, GCC at 2407, GCC at 2334, GCC at 2315, GCC at 2265, GCC at 2208, GCC at 2074, GCC at 2006, GCC at 1992, GCC at 1981, GCC at 1634, GCC at 1620, GCC at 1608, GCC at 1503, GCC at 1456, GCC at 1328, GCC at 1255, GCC at 1236, GCC at 1200, GCC at 1195, GCC at 1153, GCC at 1062, GCC at 1037, GCC at 964, GCC at 945, GCC at 896, GCC at 871, GCC at 729, GCC at 689, GCC at 664, GCC at 645, GCC at 553, GCC at 511, GCC at 505, GCC at 501, GCC at 456, GCC at 416, GCC at 372, GCC at 36.
  7. inverse complement, negative strand, positive direction, looking for GCC, 129, GCC at 4403, GCC at 4304, GCC at 4291, GCC at 4280, GCC at 4274, GCC at 4238, GCC at 4232, GCC at 4227, GCC at 4210, GCC at 4190, GCC at 3998, GCC at 3896, GCC at 3809, GCC at 3755, GCC at 3702, GCC at 3681, GCC at 3676, GCC at 3499, GCC at 3492, GCC at 3431, GCC at 3375, GCC at 3359, GCC at 3285, GCC at 3235, GCC at 3224, GCC at 3218, GCC at 3101, GCC at 3036, GCC at 3011, GCC at 2990, GCC at 2985, GCC at 2905, GCC at 2897, GCC at 2888, GCC at 2878, GCC at 2823, GCC at 2571, GCC at 2558, GCC at 2527, GCC at 2521, GCC at 2478, GCC at 2391, GCC at 2353, GCC at 2069, GCC at 2009, GCC at 1857, GCC at 1848, GCC at 1795, GCC at 1769, GCC at 1757, GCC at 1754, GCC at 1738, GCC at 1672, GCC at 1656, GCC at 1646, GCC at 1604, GCC at 1596, GCC at 1569, GCC at 1541, GCC at 1513, GCC at 1498, GCC at 1485, GCC at 1466, GCC at 1454, GCC at 1429, GCC at 1408, GCC at 1398, GCC at 1385, GCC at 1366, GCC at 1354, GCC at 1329, GCC at 1308, GCC at 1302, GCC at 1289, GCC at 1268, GCC at 1261, GCC at 1246, GCC at 1233, GCC at 1172, GCC at 1162, GCC at 1149, GCC at 1078, GCC at 1065, GCC at 1009, GCC at 988, GCC at 981, GCC at 949, GCC at 932, GCC at 925, GCC at 908, GCC at 904, GCC at 901, GCC at 888, GCC at 881, GCC at 849, GCC at 832, GCC at 825, GCC at 808, GCC at 804, GCC at 764, GCC at 740, GCC at 729, GCC at 722, GCC at 673, GCC at 645, GCC at 614, GCC at 595, GCC at 589, GCC at 572, GCC at 561, GCC at 512, GCC at 482, GCC at 474, GCC at 459, GCC at 452, GCC at 432, GCC at 420, GCC at 389, GCC at 371, GCC at 340, GCC at 326, GCC at 283, GCC at 248, GCC at 238, GCC at 212, GCC at 199, GCC at 131, GCC at 92, GCC at 65.
  8. inverse complement, positive strand, positive direction, looking for GCC, 76, GCC at 4439, GCC at 4429, GCC at 4345, GCC at 4259, GCC at 4244, GCC at 4002, GCC at 3748, GCC at 3670, GCC at 3605, GCC at 3557, GCC at 3515, GCC at 3487, GCC at 2485, GCC at 1916, GCC at 1901, GCC at 1846, GCC at 1793, GCC at 1764, GCC at 1759, GCC at 1751, GCC at 1714, GCC at 1706, GCC at 1698, GCC at 1690, GCC at 1680, GCC at 1641, GCC at 1636, GCC at 1590, GCC at 1581, GCC at 1559, GCC at 1546, GCC at 1529, GCC at 1437, GCC at 1422, GCC at 1337, GCC at 1322, GCC at 1294, GCC at 1254, GCC at 1223, GCC at 1210, GCC at 1202, GCC at 1170, GCC at 1147, GCC at 1086, GCC at 1042, GCC at 1033, GCC at 1025, GCC at 1002, GCC at 979, GCC at 971, GCC at 910, GCC at 879, GCC at 871, GCC at 810, GCC at 762, GCC at 750, GCC at 743, GCC at 720, GCC at 666, GCC at 636, GCC at 582, GCC at 538, GCC at 498, GCC at 489, GCC at 484, GCC at 476, GCC at 442, GCC at 411, GCC at 406, GCC at 399, GCC at 375, GCC at 356, GCC at 353, GCC at 331, GCC at 324, GCC at 299.

GGC (4560-2846) UTRs

  1. Negative strand, negative direction: GGC at 4323, GGC at 3874.
  2. Negative strand, negative direction: GCC at 4324, GCC at 3999, GCC at 3596, GCC at 3090.
  3. Positive strand, negative direction: GGC at 4279, GGC at 4273, GGC at 4254, GGC at 4239, GGC at 4190, GGC at 4166, GGC at 4142, GGC at 4111, GGC at 4103, GGC at 4098, GGC at 4039, GGC at 3997, GGC at 3991, GGC at 3960, GGC at 3947, GGC at 3927, GGC at 3896, GGC at 3872, GGC at 3716, GGC at 3629, GGC at 3612, GGC at 3597, GGC at 3586, GGC at 3574, GGC at 3566, GGC at 3475, GGC at 3448, GGC at 3442, GGC at 3397, GGC at 3300, GGC at 3227, GGC at 3221, GGC at 3129, GGC at 3088, GGC at 3082, GGC at 3051, GGC at 3043, GGC at 3038, GGC at 3005, GGC at 2907.
  4. Positive strand, negative direction: GCC at 4521, GCC at 4490, GCC at 4481, GCC at 4440, GCC at 4412, GCC at 4346, GCC at 4322, GCC at 4297, GCC at 4249, GCC at 4230, GCC at 4167, GCC at 4118, GCC at 4099, GCC at 4034, GCC at 4015, GCC at 3948, GCC at 3928, GCC at 3881, GCC at 3873, GCC at 3852, GCC at 3839, GCC at 3727, GCC at 3683, GCC at 3575, GCC at 3567, GCC at 3561, GCC at 3295, GCC at 3281, GCC at 3270, GCC at 3205, GCC at 3197, GCC at 3130, GCC at 3125.

GGC positive direction (4445-4265) core promoters

  1. Negative strand, positive direction: GGC at 4437, GGC at 4427, GGC at 4402, GGC at 4303.
  2. Negative strand, positive direction: GCC at 4403, GCC at 4304, GCC at 4291, GCC at 4280, GCC at 4274.
  3. Positive strand, positive direction: GGC at 4344, GGC at 4289, GGC at 4276.
  4. Positive strand, positive direction: GCC at 4439, GCC at 4429, GCC at 4345.

GGC negative direction (2811-2596) proximal promoters

  1. Negative strand, negative direction: GCC at 2727, GCC at 2724.
  2. Positive strand, negative direction: GGC at 2772, GGC at 2725, GGC at 2722, GGC at 2693, GGC at 2662, GGC at 2606.
  3. Positive strand, negative direction: GCC at 2767, GCC at 2753, GCC at 2669, GCC at 2651, GCC at 2607.

GGC positive direction (4265-4050) proximal promoters

  1. Negative strand, positive direction: GGC at 4226, GGC at 4189, GGC at 4179.
  2. Negative strand, positive direction: GCC at 4238, GCC at 4232, GCC at 4227, GCC at 4210, GCC at 4190.
  3. Positive strand, positive direction: GGC at 4243, GGC at 4236.
  4. Positive strand, positive direction: GCC at 4259, GCC at 4244.

GGC negative direction (2596-1) distal promoters

GGC negative strand, negative direction (2596-1) distal promoters

  1. Negative strand, negative direction: GGC at 2408, GGC at 2353, GGC at 2316, GGC at 2190, GGC at 1982, GGC at 1508, GGC at 1501, GGC at 1329, GGC at 1237, GGC at 1217, GGC at 1154, GGC at 1038, GGC at 751, GGC at 512, GGC at 373.
  2. Negative strand, negative direction: GCC at 2524, GCC at 2454, GCC at 2392, GCC at 2354, GCC at 2317, GCC at 2231, GCC at 2197, GCC at 2191, GCC at 1809, GCC at 1762, GCC at 1752, GCC at 1680, GCC at 1250, GCC at 1238, GCC at 956, GCC at 865, GCC at 856, GCC at 700, GCC at 653, GCC at 513, GCC at 427, GCC at 380, GCC at 374.

GGC positive strand, negative direction (2596-1) distal promoters

  1. Positive strand, negative direction: GGC at 2565, GGC at 2559, GGC at 2528, GGC at 2520, GGC at 2515, GGC at 2437, GGC at 2390, GGC at 2386, GGC at 2364, GGC at 2358, GGC at 2319, GGC at 2229, GGC at 2223, GGC at 2201, GGC at 2153, GGC at 2106, GGC at 2073, GGC at 2066, GGC at 2011, GGC at 1964, GGC at 1949, GGC at 1938, GGC at 1905, GGC at 1893, GGC at 1842, GGC at 1820, GGC at 1807, GGC at 1797, GGC at 1766, GGC at 1758, GGC at 1753, GGC at 1750, GGC at 1743, GGC at 1557, GGC at 1461, GGC at 1358, GGC at 1311, GGC at 1285, GGC at 1279, GGC at 1248, GGC at 1240, GGC at 1199, GGC at 1121, GGC at 1113, GGC at 1108, GGC at 1020, GGC at 994, GGC at 988, GGC at 957, GGC at 954, GGC at 949, GGC at 901, GGC at 854, GGC at 828, GGC at 822, GGC at 698, GGC at 694, GGC at 688, GGC at 657, GGC at 649, GGC at 644, GGC at 597, GGC at 562, GGC at 552, GGC at 515, GGC at 510, GGC at 461, GGC at 451, GGC at 425, GGC at 415, GGC at 384, GGC at 371, GGC at 263, GGC at 120, GGC at 89.
  2. Positive strand, negative direction: GCC at 2535, GCC at 2516, GCC at 2432, GCC at 2407, GCC at 2334, GCC at 2315, GCC at 2265, GCC at 2208, GCC at 2074, GCC at 2006, GCC at 1992, GCC at 1981, GCC at 1634, GCC at 1620, GCC at 1608, GCC at 1503, GCC at 1456, GCC at 1328, GCC at 1255, GCC at 1236, GCC at 1200, GCC at 1195, GCC at 1153, GCC at 1062, GCC at 1037, GCC at 964, GCC at 945, GCC at 896, GCC at 871, GCC at 729, GCC at 689, GCC at 664, GCC at 645, GCC at 553, GCC at 511, GCC at 505, GCC at 501, GCC at 456, GCC at 416, GCC at 372, GCC at 36.

GGC positive direction (4050-1) distal promoters

GGC negative strand, positive direction (4050-1) distal promoters

  1. Negative strand, positive direction: GGC at 4003, GGC at 3991, GGC at 3982, GGC at 3907, GGC at 3754, GGC at 3695, GGC at 3688, GGC at 3680, GGC at 3675, GGC at 3659, GGC at 3637, GGC at 3585, GGC at 3523, GGC at 3498, GGC at 3485, GGC at 3480, GGC at 3470, GGC at 3406, GGC at 3346, GGC at 3118, GGC at 3035, GGC at 2989, GGC at 2984, GGC at 2912, GGC at 2893, GGC at 2884, GGC at 2877, GGC at 2807, GGC at 2767, GGC at 2694, GGC at 2570, GGC at 2551, GGC at 2503, GGC at 2483, GGC at 2434, GGC at 2367, GGC at 2317, GGC at 2293, GGC at 2186, GGC at 2160, GGC at 2116, GGC at 2068, GGC at 1993, GGC at 1972, GGC at 1944, GGC at 1917, GGC at 1906, GGC at 1902, GGC at 1899, GGC at 1881, GGC at 1856, GGC at 1847, GGC at 1816, GGC at 1794, GGC at 1791, GGC at 1766, GGC at 1753, GGC at 1737, GGC at 1716, GGC at 1699, GGC at 1645, GGC at 1637, GGC at 1582, GGC at 1568, GGC at 1561, GGC at 1547, GGC at 1512, GGC at 1484, GGC at 1477, GGC at 1438, GGC at 1428, GGC at 1423, GGC at 1384, GGC at 1377, GGC at 1338, GGC at 1328, GGC at 1323, GGC at 1295, GGC at 1260, GGC at 1255, GGC at 1225, GGC at 1211, GGC at 1200, GGC at 1189, GGC at 1176, GGC at 1171, GGC at 1148, GGC at 1092, GGC at 1043, GGC at 1034, GGC at 1028, GGC at 1023, GGC at 1008, GGC at 1003, GGC at 980, GGC at 973, GGC at 948, GGC at 924, GGC at 919, GGC at 880, GGC at 873, GGC at 848, GGC at 824, GGC at 819, GGC at 763, GGC at 751, GGC at 721, GGC at 672, GGC at 667, GGC at 637, GGC at 588, GGC at 583, GGC at 553, GGC at 539, GGC at 517, GGC at 504, GGC at 499, GGC at 478, GGC at 444, GGC at 419, GGC at 414, GGC at 404, GGC at 388, GGC at 376, GGC at 370, GGC at 354, GGC at 351, GGC at 332, GGC at 325, GGC at 315, GGC at 282, GGC at 274, GGC at 261, GGC at 247, GGC at 211, GGC at 198, GGC at 158, GGC at 91, GGC at 26, GGC at 19, GGC at 9.
  2. Negative strand, positive direction: GCC at 3998, GCC at 3896, GCC at 3809, GCC at 3755, GCC at 3702, GCC at 3681, GCC at 3676, GCC at 3499, GCC at 3492, GCC at 3431, GCC at 3375, GCC at 3359, GCC at 3285, GCC at 3235, GCC at 3224, GCC at 3218, GCC at 3101, GCC at 3036, GCC at 3011, GCC at 2990, GCC at 2985, GCC at 2905, GCC at 2897, GCC at 2888, GCC at 2878, GCC at 2823, GCC at 2571, GCC at 2558, GCC at 2527, GCC at 2521, GCC at 2478, GCC at 2391, GCC at 2353, GCC at 2069, GCC at 2009, GCC at 1857, GCC at 1848, GCC at 1795, GCC at 1769, GCC at 1757, GCC at 1754, GCC at 1738, GCC at 1672, GCC at 1656, GCC at 1646, GCC at 1604, GCC at 1596, GCC at 1569, GCC at 1541, GCC at 1513, GCC at 1498, GCC at 1485, GCC at 1466, GCC at 1454, GCC at 1429, GCC at 1408, GCC at 1398, GCC at 1385, GCC at 1366, GCC at 1354, GCC at 1329, GCC at 1308, GCC at 1302, GCC at 1289, GCC at 1268, GCC at 1261, GCC at 1246, GCC at 1233, GCC at 1172, GCC at 1162, GCC at 1149, GCC at 1078, GCC at 1065, GCC at 1009, GCC at 988, GCC at 981, GCC at 949, GCC at 932, GCC at 925, GCC at 908, GCC at 904, GCC at 901, GCC at 888, GCC at 881, GCC at 849, GCC at 832, GCC at 825, GCC at 808, GCC at 804, GCC at 764, GCC at 740, GCC at 729, GCC at 722, GCC at 673, GCC at 645, GCC at 614, GCC at 595, GCC at 589, GCC at 572, GCC at 561, GCC at 512, GCC at 482, GCC at 474, GCC at 459, GCC at 452, GCC at 432, GCC at 420, GCC at 389, GCC at 371, GCC at 340, GCC at 326, GCC at 283, GCC at 248, GCC at 238, GCC at 212, GCC at 199, GCC at 131, GCC at 92, GCC at 65.

GGC positive strand, positive direction (4050-1) distal promoters

  1. Positive strand, positive direction: GGC at 4001, GGC at 3912, GGC at 3810, GGC at 3798, GGC at 3556, GGC at 3324, GGC at 3225, GGC at 3200, GGC at 2562, GGC at 2354, GGC at 2214, GGC at 2149, GGC at 1961, GGC at 1845, GGC at 1758, GGC at 1755, GGC at 1664, GGC at 1647, GGC at 1608, GGC at 1545, GGC at 1486, GGC at 1445, GGC at 1434, GGC at 1386, GGC at 1345, GGC at 1334, GGC at 1293, GGC at 1209, GGC at 1163, GGC at 1098, GGC at 1079, GGC at 1041, GGC at 995, GGC at 950, GGC at 909, GGC at 902, GGC at 895, GGC at 850, GGC at 809, GGC at 789, GGC at 765, GGC at 742, GGC at 735, GGC at 678, GGC at 575, GGC at 562, GGC at 483, GGC at 475, GGC at 441, GGC at 392, GGC at 374, GGC at 307, GGC at 74.
  2. Positive strand, positive direction: GCC at 4002, GCC at 3748, GCC at 3670, GCC at 3605, GCC at 3557, GCC at 3515, GCC at 3487, GCC at 2485, GCC at 1916, GCC at 1901, GCC at 1846, GCC at 1793, GCC at 1764, GCC at 1759, GCC at 1751, GCC at 1714, GCC at 1706, GCC at 1698, GCC at 1690, GCC at 1680, GCC at 1641, GCC at 1636, GCC at 1590, GCC at 1581, GCC at 1559, GCC at 1546, GCC at 1529, GCC at 1437, GCC at 1422, GCC at 1337, GCC at 1322, GCC at 1294, GCC at 1254, GCC at 1223, GCC at 1210, GCC at 1202, GCC at 1170, GCC at 1147, GCC at 1086, GCC at 1042, GCC at 1033, GCC at 1025, GCC at 1002, GCC at 979, GCC at 971, GCC at 910, GCC at 879, GCC at 871, GCC at 810, GCC at 762, GCC at 750, GCC at 743, GCC at 720, GCC at 666, GCC at 636, GCC at 582, GCC at 538, GCC at 498, GCC at 489, GCC at 484, GCC at 476, GCC at 442, GCC at 411, GCC at 406, GCC at 399, GCC at 375, GCC at 356, GCC at 353, GCC at 331, GCC at 324, GCC at 299.

GGC triplet random dataset samplings

  1. GGCMr0: 82, GGC at 4536, GGC at 4467, GGC at 4453, GGC at 4334, GGC at 4263, GGC at 4250, GGC at 4239, GGC at 4157, GGC at 4078, GGC at 3997, GGC at 3987, GGC at 3920, GGC at 3900, GGC at 3869, GGC at 3852, GGC at 3739, GGC at 3715, GGC at 3671, GGC at 3642, GGC at 3547, GGC at 3544, GGC at 3487, GGC at 3455, GGC at 3444, GGC at 3424, GGC at 3403, GGC at 3347, GGC at 3290, GGC at 3245, GGC at 3234, GGC at 3222, GGC at 3197, GGC at 3112, GGC at 3088, GGC at 3045, GGC at 3004, GGC at 2994, GGC at 2978, GGC at 2886, GGC at 2844, GGC at 2838, GGC at 2816, GGC at 2767, GGC at 2741, GGC at 2708, GGC at 2640, GGC at 2582, GGC at 2470, GGC at 2466, GGC at 2442, GGC at 2436, GGC at 2385, GGC at 2347, GGC at 2281, GGC at 2124, GGC at 2065, GGC at 2030, GGC at 1846, GGC at 1741, GGC at 1716, GGC at 1651, GGC at 1631, GGC at 1603, GGC at 1590, GGC at 1419, GGC at 1389, GGC at 1347, GGC at 1287, GGC at 1252, GGC at 1247, GGC at 1219, GGC at 1202, GGC at 1073, GGC at 1028, GGC at 967, GGC at 823, GGC at 787, GGC at 582, GGC at 525, GGC at 486, GGC at 305, GGC at 138.
  2. GGCMr1: 85, GGC at 4550, GGC at 4520, GGC at 4477, GGC at 4471, GGC at 4305, GGC at 4296, GGC at 4185, GGC at 4141, GGC at 4135, GGC at 4085, GGC at 4054, GGC at 4046, GGC at 3940, GGC at 3920, GGC at 3914, GGC at 3816, GGC at 3801, GGC at 3736, GGC at 3709, GGC at 3705, GGC at 3674, GGC at 3659, GGC at 3615, GGC at 3574, GGC at 3526, GGC at 3403, GGC at 3234, GGC at 3211, GGC at 3202, GGC at 3154, GGC at 3135, GGC at 3104, GGC at 2922, GGC at 2821, GGC at 2703, GGC at 2649, GGC at 2543, GGC at 2521, GGC at 2515, GGC at 2385, GGC at 2275, GGC at 2191, GGC at 2103, GGC at 2073, GGC at 2056, GGC at 2049, GGC at 2016, GGC at 2001, GGC at 1987, GGC at 1913, GGC at 1901, GGC at 1689, GGC at 1477, GGC at 1464, GGC at 1364, GGC at 1348, GGC at 1324, GGC at 1283, GGC at 1150, GGC at 1113, GGC at 996, GGC at 989, GGC at 950, GGC at 913, GGC at 897, GGC at 848, GGC at 839, GGC at 821, GGC at 728, GGC at 720, GGC at 692, GGC at 682, GGC at 670, GGC at 663, GGC at 625, GGC at 587, GGC at 512, GGC at 504, GGC at 477, GGC at 445, GGC at 268, GGC at 144, GGC at 122, GGC at 76, GGC at 65.
  3. GGCMr2: 73, GGC at 4546, GGC at 4538, GGC at 4500, GGC at 4440, GGC at 4430, GGC at 4392, GGC at 4348, GGC at 4345, GGC at 4283, GGC at 4228, GGC at 4206, GGC at 4092, GGC at 3995, GGC at 3973, GGC at 3912, GGC at 3749, GGC at 3698, GGC at 3681, GGC at 3670, GGC at 3648, GGC at 3639, GGC at 3606, GGC at 3593, GGC at 3522, GGC at 3413, GGC at 3295, GGC at 3263, GGC at 3255, GGC at 3203, GGC at 3048, GGC at 3005, GGC at 2816, GGC at 2698, GGC at 2616, GGC at 2498, GGC at 2449, GGC at 2282, GGC at 2275, GGC at 2260, GGC at 2073, GGC at 2034, GGC at 1933, GGC at 1922, GGC at 1908, GGC at 1728, GGC at 1607, GGC at 1303, GGC at 1221, GGC at 1180, GGC at 1000, GGC at 975, GGC at 962, GGC at 870, GGC at 832, GGC at 817, GGC at 798, GGC at 772, GGC at 686, GGC at 625, GGC at 613, GGC at 547, GGC at 542, GGC at 529, GGC at 460, GGC at 429, GGC at 422, GGC at 331, GGC at 327, GGC at 171, GGC at 111, GGC at 74, GGC at 27, GGC at 14.
  4. GGCMr3: 81, GGC at 4534, GGC at 4502, GGC at 4393, GGC at 4143, GGC at 4109, GGC at 4030, GGC at 3950, GGC at 3923, GGC at 3856, GGC at 3837, GGC at 3649, GGC at 3635, GGC at 3606, GGC at 3496, GGC at 3413, GGC at 3403, GGC at 3370, GGC at 3328, GGC at 3208, GGC at 3155, GGC at 3144, GGC at 3108, GGC at 3004, GGC at 2991, GGC at 2909, GGC at 2875, GGC at 2866, GGC at 2724, GGC at 2717, GGC at 2694, GGC at 2658, GGC at 2620, GGC at 2575, GGC at 2534, GGC at 2510, GGC at 2390, GGC at 2354, GGC at 2343, GGC at 2310, GGC at 2191, GGC at 2163, GGC at 2051, GGC at 1987, GGC at 1967, GGC at 1954, GGC at 1940, GGC at 1926, GGC at 1922, GGC at 1907, GGC at 1895, GGC at 1879, GGC at 1764, GGC at 1609, GGC at 1590, GGC at 1548, GGC at 1517, GGC at 1494, GGC at 1477, GGC at 1455, GGC at 1442, GGC at 1439, GGC at 1211, GGC at 1183, GGC at 1114, GGC at 902, GGC at 868, GGC at 864, GGC at 852, GGC at 813, GGC at 775, GGC at 667, GGC at 646, GGC at 618, GGC at 520, GGC at 516, GGC at 397, GGC at 380, GGC at 228, GGC at 130, GGC at 83, GGC at 65.
  5. GGCMr4: 80, GGC at 4560, GGC at 4494, GGC at 4400, GGC at 4389, GGC at 4340, GGC at 4247, GGC at 4227, GGC at 4204, GGC at 4177, GGC at 4137, GGC at 4109, GGC at 4106, GGC at 4089, GGC at 4077, GGC at 4011, GGC at 3959, GGC at 3843, GGC at 3744, GGC at 3729, GGC at 3580, GGC at 3570, GGC at 3556, GGC at 3547, GGC at 3464, GGC at 3459, GGC at 3265, GGC at 3232, GGC at 3161, GGC at 3100, GGC at 3021, GGC at 2983, GGC at 2925, GGC at 2911, GGC at 2848, GGC at 2804, GGC at 2680, GGC at 2625, GGC at 2614, GGC at 2531, GGC at 2520, GGC at 2384, GGC at 2238, GGC at 2066, GGC at 1991, GGC at 1950, GGC at 1904, GGC at 1881, GGC at 1876, GGC at 1872, GGC at 1625, GGC at 1582, GGC at 1546, GGC at 1482, GGC at 1468, GGC at 1457, GGC at 1389, GGC at 1365, GGC at 1341, GGC at 1154, GGC at 1113, GGC at 1076, GGC at 1025, GGC at 1018, GGC at 959, GGC at 954, GGC at 870, GGC at 810, GGC at 787, GGC at 713, GGC at 709, GGC at 688, GGC at 653, GGC at 637, GGC at 524, GGC at 449, GGC at 351, GGC at 218, GGC at 186, GGC at 155, GGC at 59.
  6. GGCMr5: 89, GGC at 4485, GGC at 4449, GGC at 4435, GGC at 4422, GGC at 4385, GGC at 4370, GGC at 4279, GGC at 4262, GGC at 4174, GGC at 3957, GGC at 3952, GGC at 3909, GGC at 3903, GGC at 3882, GGC at 3840, GGC at 3812, GGC at 3787, GGC at 3772, GGC at 3752, GGC at 3743, GGC at 3586, GGC at 3573, GGC at 3556, GGC at 3504, GGC at 3454, GGC at 3179, GGC at 3161, GGC at 3074, GGC at 3062, GGC at 3053, GGC at 3006, GGC at 2932, GGC at 2929, GGC at 2792, GGC at 2755, GGC at 2687, GGC at 2672, GGC at 2615, GGC at 2590, GGC at 2530, GGC at 2392, GGC at 2363, GGC at 2346, GGC at 2166, GGC at 2032, GGC at 1992, GGC at 1987, GGC at 1965, GGC at 1922, GGC at 1832, GGC at 1797, GGC at 1700, GGC at 1597, GGC at 1494, GGC at 1433, GGC at 1424, GGC at 1387, GGC at 1347, GGC at 1232, GGC at 1216, GGC at 1183, GGC at 1131, GGC at 1081, GGC at 1046, GGC at 1028, GGC at 967, GGC at 963, GGC at 869, GGC at 804, GGC at 770, GGC at 742, GGC at 732, GGC at 685, GGC at 678, GGC at 675, GGC at 662, GGC at 640, GGC at 593, GGC at 582, GGC at 578, GGC at 567, GGC at 412, GGC at 355, GGC at 243, GGC at 215, GGC at 185, GGC at 179, GGC at 175, GGC at 68.
  7. GGCMr6: 87, GGC at 4549, GGC at 4455, GGC at 4434, GGC at 4431, GGC at 4387, GGC at 4348, GGC at 4286, GGC at 4252, GGC at 4204, GGC at 4045, GGC at 3912, GGC at 3795, GGC at 3743, GGC at 3722, GGC at 3635, GGC at 3571, GGC at 3544, GGC at 3426, GGC at 3371, GGC at 3275, GGC at 3247, GGC at 3235, GGC at 3200, GGC at 3134, GGC at 3083, GGC at 2977, GGC at 2695, GGC at 2574, GGC at 2558, GGC at 2518, GGC at 2497, GGC at 2428, GGC at 2320, GGC at 2301, GGC at 2288, GGC at 2199, GGC at 2157, GGC at 2091, GGC at 1973, GGC at 1958, GGC at 1950, GGC at 1894, GGC at 1854, GGC at 1799, GGC at 1687, GGC at 1665, GGC at 1613, GGC at 1592, GGC at 1579, GGC at 1574, GGC at 1565, GGC at 1561, GGC at 1535, GGC at 1480, GGC at 1466, GGC at 1457, GGC at 1451, GGC at 1409, GGC at 1400, GGC at 1366, GGC at 1332, GGC at 1327, GGC at 1276, GGC at 1232, GGC at 1216, GGC at 1161, GGC at 1147, GGC at 1075, GGC at 964, GGC at 935, GGC at 865, GGC at 736, GGC at 720, GGC at 685, GGC at 649, GGC at 571, GGC at 550, GGC at 477, GGC at 465, GGC at 251, GGC at 221, GGC at 122, GGC at 111, GGC at 84, GGC at 74, GGC at 22, GGC at 11.
  8. GGCMr7: 78, GGC at 4425, GGC at 4403, GGC at 4383, GGC at 4276, GGC at 4160, GGC at 4019, GGC at 4015, GGC at 3982, GGC at 3951, GGC at 3877, GGC at 3846, GGC at 3720, GGC at 3698, GGC at 3672, GGC at 3615, GGC at 3536, GGC at 3515, GGC at 3508, GGC at 3498, GGC at 3488, GGC at 3427, GGC at 3389, GGC at 3380, GGC at 3359, GGC at 3342, GGC at 3298, GGC at 3253, GGC at 3078, GGC at 3024, GGC at 2733, GGC at 2614, GGC at 2494, GGC at 2487, GGC at 2482, GGC at 2440, GGC at 2435, GGC at 2426, GGC at 2298, GGC at 2227, GGC at 2041, GGC at 1995, GGC at 1962, GGC at 1935, GGC at 1927, GGC at 1907, GGC at 1851, GGC at 1786, GGC at 1775, GGC at 1756, GGC at 1730, GGC at 1710, GGC at 1700, GGC at 1616, GGC at 1611, GGC at 1586, GGC at 1516, GGC at 1495, GGC at 1377, GGC at 1262, GGC at 1244, GGC at 1235, GGC at 1218, GGC at 1191, GGC at 1067, GGC at 1062, GGC at 1042, GGC at 1029, GGC at 913, GGC at 858, GGC at 832, GGC at 784, GGC at 774, GGC at 688, GGC at 653, GGC at 449, GGC at 222, GGC at 163, GGC at 12.
  9. GGCMr8: 83, GGC at 4528, GGC at 4502, GGC at 4318, GGC at 4280, GGC at 4277, GGC at 4162, GGC at 4132, GGC at 4119, GGC at 4088, GGC at 4040, GGC at 4008, GGC at 3959, GGC at 3894, GGC at 3862, GGC at 3810, GGC at 3806, GGC at 3736, GGC at 3668, GGC at 3632, GGC at 3536, GGC at 3531, GGC at 3357, GGC at 3319, GGC at 3286, GGC at 3257, GGC at 3248, GGC at 3240, GGC at 3182, GGC at 3135, GGC at 3107, GGC at 2951, GGC at 2824, GGC at 2741, GGC at 2682, GGC at 2677, GGC at 2633, GGC at 2592, GGC at 2469, GGC at 2457, GGC at 2423, GGC at 2354, GGC at 2334, GGC at 2282, GGC at 2028, GGC at 1981, GGC at 1883, GGC at 1856, GGC at 1781, GGC at 1715, GGC at 1691, GGC at 1636, GGC at 1599, GGC at 1567, GGC at 1544, GGC at 1524, GGC at 1511, GGC at 1410, GGC at 1386, GGC at 1276, GGC at 1206, GGC at 1088, GGC at 1017, GGC at 1004, GGC at 944, GGC at 937, GGC at 858, GGC at 834, GGC at 819, GGC at 754, GGC at 713, GGC at 668, GGC at 661, GGC at 640, GGC at 599, GGC at 486, GGC at 381, GGC at 297, GGC at 258, GGC at 239, GGC at 205, GGC at 186, GGC at 159, GGC at 131.
  10. GGCMr9: 90, GGC at 4513, GGC at 4506, GGC at 4367, GGC at 4359, GGC at 4343, GGC at 4047, GGC at 3996, GGC at 3979, GGC at 3930, GGC at 3913, GGC at 3902, GGC at 3896, GGC at 3893, GGC at 3878, GGC at 3810, GGC at 3788, GGC at 3628, GGC at 3625, GGC at 3598, GGC at 3536, GGC at 3342, GGC at 3323, GGC at 3238, GGC at 3162, GGC at 3001, GGC at 2980, GGC at 2944, GGC at 2937, GGC at 2857, GGC at 2852, GGC at 2680, GGC at 2654, GGC at 2587, GGC at 2551, GGC at 2368, GGC at 2305, GGC at 2190, GGC at 2169, GGC at 2160, GGC at 2132, GGC at 2069, GGC at 2018, GGC at 2005, GGC at 1893, GGC at 1839, GGC at 1824, GGC at 1810, GGC at 1727, GGC at 1724, GGC at 1716, GGC at 1687, GGC at 1502, GGC at 1427, GGC at 1411, GGC at 1392, GGC at 1370, GGC at 1285, GGC at 1262, GGC at 1254, GGC at 1218, GGC at 1209, GGC at 1177, GGC at 1146, GGC at 1140, GGC at 1111, GGC at 1046, GGC at 1040, GGC at 979, GGC at 955, GGC at 896, GGC at 887, GGC at 816, GGC at 770, GGC at 763, GGC at 742, GGC at 640, GGC at 633, GGC at 628, GGC at 608, GGC at 565, GGC at 505, GGC at 487, GGC at 443, GGC at 340, GGC at 333, GGC at 299, GGC at 257, GGC at 216, GGC at 211, GGC at 187.
  11. GGCMr0ci: 84, GCC at 4468, GCC at 4454, GCC at 4335, GCC at 4330, GCC at 4291, GCC at 4264, GCC at 4257, GCC at 4251, GCC at 4246, GCC at 4158, GCC at 4075, GCC at 4066, GCC at 3998, GCC at 3988, GCC at 3890, GCC at 3886, GCC at 3853, GCC at 3793, GCC at 3770, GCC at 3740, GCC at 3672, GCC at 3429, GCC at 3407, GCC at 3404, GCC at 3383, GCC at 3348, GCC at 3328, GCC at 3300, GCC at 3239, GCC at 3213, GCC at 3041, GCC at 3000, GCC at 2869, GCC at 2862, GCC at 2834, GCC at 2817, GCC at 2770, GCC at 2713, GCC at 2709, GCC at 2686, GCC at 2641, GCC at 2437, GCC at 2405, GCC at 2401, GCC at 2386, GCC at 2380, GCC at 2377, GCC at 2366, GCC at 2313, GCC at 2266, GCC at 2212, GCC at 2159, GCC at 2125, GCC at 1944, GCC at 1888, GCC at 1880, GCC at 1760, GCC at 1681, GCC at 1652, GCC at 1632, GCC at 1621, GCC at 1384, GCC at 1381, GCC at 1288, GCC at 1203, GCC at 1181, GCC at 1078, GCC at 1061, GCC at 1001, GCC at 912, GCC at 857, GCC at 806, GCC at 773, GCC at 583, GCC at 520, GCC at 445, GCC at 368, GCC at 341, GCC at 325, GCC at 306, GCC at 243, GCC at 164, GCC at 62, GCC at 35.
  12. GGCMr1ci: 88, GCC at 4557, GCC at 4478, GCC at 4459, GCC at 4423, GCC at 4327, GCC at 4287, GCC at 4212, GCC at 4181, GCC at 4131, GCC at 4112, GCC at 4086, GCC at 3921, GCC at 3904, GCC at 3849, GCC at 3830, GCC at 3802, GCC at 3766, GCC at 3758, GCC at 3706, GCC at 3660, GCC at 3625, GCC at 3527, GCC at 3497, GCC at 3404, GCC at 3390, GCC at 3306, GCC at 3294, GCC at 3128, GCC at 3105, GCC at 2926, GCC at 2917, GCC at 2881, GCC at 2859, GCC at 2824, GCC at 2782, GCC at 2732, GCC at 2718, GCC at 2664, GCC at 2635, GCC at 2596, GCC at 2530, GCC at 2403, GCC at 2386, GCC at 2349, GCC at 2282, GCC at 2276, GCC at 2186, GCC at 2089, GCC at 2045, GCC at 2027, GCC at 2017, GCC at 2002, GCC at 1905, GCC at 1783, GCC at 1690, GCC at 1673, GCC at 1645, GCC at 1560, GCC at 1555, GCC at 1525, GCC at 1425, GCC at 1365, GCC at 1349, GCC at 1237, GCC at 1196, GCC at 1114, GCC at 1058, GCC at 1041, GCC at 1013, GCC at 951, GCC at 914, GCC at 898, GCC at 840, GCC at 721, GCC at 714, GCC at 664, GCC at 635, GCC at 628, GCC at 513, GCC at 505, GCC at 446, GCC at 421, GCC at 255, GCC at 228, GCC at 220, GCC at 187, GCC at 123, GCC at 77.
  13. GGCMr2ci: 84, GCC at 4539, GCC at 4509, GCC at 4503, GCC at 4431, GCC at 4393, GCC at 4229, GCC at 4207, GCC at 4179, GCC at 4164, GCC at 4149, GCC at 4134, GCC at 4093, GCC at 4075, GCC at 4053, GCC at 4019, GCC at 3996, GCC at 3957, GCC at 3936, GCC at 3913, GCC at 3896, GCC at 3869, GCC at 3861, GCC at 3831, GCC at 3778, GCC at 3750, GCC at 3736, GCC at 3699, GCC at 3640, GCC at 3586, GCC at 3583, GCC at 3346, GCC at 3256, GCC at 3102, GCC at 3073, GCC at 2972, GCC at 2774, GCC at 2699, GCC at 2620, GCC at 2598, GCC at 2595, GCC at 2578, GCC at 2562, GCC at 2558, GCC at 2523, GCC at 2450, GCC at 2283, GCC at 2276, GCC at 2261, GCC at 2095, GCC at 2074, GCC at 2023, GCC at 1966, GCC at 1963, GCC at 1939, GCC at 1880, GCC at 1814, GCC at 1710, GCC at 1608, GCC at 1568, GCC at 1536, GCC at 1526, GCC at 1487, GCC at 1468, GCC at 1299, GCC at 1253, GCC at 1228, GCC at 1222, GCC at 1093, GCC at 950, GCC at 883, GCC at 799, GCC at 788, GCC at 759, GCC at 706, GCC at 689, GCC at 666, GCC at 639, GCC at 502, GCC at 439, GCC at 328, GCC at 205, GCC at 84, GCC at 75, GCC at 28.
  14. GGCMr3ci: 83, GCC at 4547, GCC at 4535, GCC at 4517, GCC at 4503, GCC at 4279, GCC at 4144, GCC at 4138, GCC at 4135, GCC at 4076, GCC at 4031, GCC at 3792, GCC at 3746, GCC at 3725, GCC at 3450, GCC at 3421, GCC at 3397, GCC at 3376, GCC at 3234, GCC at 3109, GCC at 3079, GCC at 3040, GCC at 2992, GCC at 2894, GCC at 2882, GCC at 2867, GCC at 2792, GCC at 2789, GCC at 2708, GCC at 2404, GCC at 2378, GCC at 2373, GCC at 2311, GCC at 2287, GCC at 2246, GCC at 2175, GCC at 2087, GCC at 1988, GCC at 1973, GCC at 1955, GCC at 1866, GCC at 1765, GCC at 1751, GCC at 1699, GCC at 1610, GCC at 1591, GCC at 1575, GCC at 1518, GCC at 1495, GCC at 1478, GCC at 1456, GCC at 1452, GCC at 1449, GCC at 1426, GCC at 1421, GCC at 1389, GCC at 1330, GCC at 1184, GCC at 1175, GCC at 1144, GCC at 1115, GCC at 929, GCC at 908, GCC at 869, GCC at 865, GCC at 861, GCC at 776, GCC at 752, GCC at 668, GCC at 651, GCC at 582, GCC at 554, GCC at 521, GCC at 484, GCC at 439, GCC at 398, GCC at 362, GCC at 280, GCC at 134, GCC at 117, GCC at 106, GCC at 50, GCC at 43, GCC at 29.
  15. GGCMr4ci: 91, GCC at 4530, GCC at 4343, GCC at 4284, GCC at 4280, GCC at 4205, GCC at 4063, GCC at 4008, GCC at 3834, GCC at 3761, GCC at 3655, GCC at 3571, GCC at 3557, GCC at 3541, GCC at 3492, GCC at 3391, GCC at 3271, GCC at 3266, GCC at 3243, GCC at 3226, GCC at 3162, GCC at 3103, GCC at 3083, GCC at 3022, GCC at 2986, GCC at 2928, GCC at 2912, GCC at 2849, GCC at 2826, GCC at 2681, GCC at 2670, GCC at 2628, GCC at 2615, GCC at 2532, GCC at 2521, GCC at 2353, GCC at 2342, GCC at 2331, GCC at 2219, GCC at 2212, GCC at 2141, GCC at 2104, GCC at 2047, GCC at 2022, GCC at 1984, GCC at 1975, GCC at 1930, GCC at 1905, GCC at 1867, GCC at 1845, GCC at 1838, GCC at 1712, GCC at 1547, GCC at 1517, GCC at 1400, GCC at 1373, GCC at 1358, GCC at 1280, GCC at 1199, GCC at 1164, GCC at 1092, GCC at 1089, GCC at 1086, GCC at 1077, GCC at 1047, GCC at 1031, GCC at 1022, GCC at 1019, GCC at 1010, GCC at 1005, GCC at 966, GCC at 876, GCC at 871, GCC at 865, GCC at 811, GCC at 805, GCC at 788, GCC at 765, GCC at 714, GCC at 584, GCC at 502, GCC at 460, GCC at 352, GCC at 297, GCC at 196, GCC at 187, GCC at 140, GCC at 94, GCC at 80, GCC at 77, GCC at 19, GCC at 14.
  16. GGCMr5ci: 94, GCC at 4557, GCC at 4552, GCC at 4527, GCC at 4444, GCC at 4436, GCC at 4423, GCC at 4413, GCC at 4380, GCC at 4364, GCC at 4353, GCC at 4350, GCC at 4265, GCC at 4228, GCC at 4099, GCC at 4095, GCC at 3910, GCC at 3847, GCC at 3813, GCC at 3790, GCC at 3775, GCC at 3755, GCC at 3727, GCC at 3642, GCC at 3634, GCC at 3574, GCC at 3546, GCC at 3472, GCC at 3321, GCC at 3316, GCC at 3135, GCC at 3075, GCC at 3063, GCC at 3020, GCC at 2965, GCC at 2908, GCC at 2875, GCC at 2856, GCC at 2815, GCC at 2800, GCC at 2756, GCC at 2688, GCC at 2661, GCC at 2616, GCC at 2604, GCC at 2418, GCC at 2396, GCC at 2364, GCC at 2222, GCC at 1993, GCC at 1969, GCC at 1923, GCC at 1866, GCC at 1849, GCC at 1798, GCC at 1789, GCC at 1772, GCC at 1760, GCC at 1737, GCC at 1701, GCC at 1648, GCC at 1632, GCC at 1627, GCC at 1571, GCC at 1248, GCC at 1233, GCC at 1199, GCC at 1159, GCC at 1082, GCC at 1078, GCC at 987, GCC at 982, GCC at 870, GCC at 805, GCC at 792, GCC at 743, GCC at 701, GCC at 679, GCC at 594, GCC at 583, GCC at 479, GCC at 474, GCC at 436, GCC at 356, GCC at 349, GCC at 336, GCC at 289, GCC at 232, GCC at 186, GCC at 120, GCC at 83, GCC at 78, GCC at 69, GCC at 17, GCC at 7.
  17. GGCMr6ci: 77, GCC at 4550, GCC at 4388, GCC at 4337, GCC at 4283, GCC at 4276, GCC at 4220, GCC at 3994, GCC at 3980, GCC at 3913, GCC at 3905, GCC at 3802, GCC at 3723, GCC at 3509, GCC at 3410, GCC at 3404, GCC at 3400, GCC at 3384, GCC at 3319, GCC at 3313, GCC at 3253, GCC at 3227, GCC at 3201, GCC at 3080, GCC at 3032, GCC at 2840, GCC at 2715, GCC at 2610, GCC at 2483, GCC at 2449, GCC at 2438, GCC at 2429, GCC at 2289, GCC at 2264, GCC at 2257, GCC at 2247, GCC at 2224, GCC at 2200, GCC at 2144, GCC at 2092, GCC at 2081, GCC at 2025, GCC at 1974, GCC at 1951, GCC at 1883, GCC at 1855, GCC at 1706, GCC at 1688, GCC at 1674, GCC at 1666, GCC at 1643, GCC at 1593, GCC at 1540, GCC at 1401, GCC at 1282, GCC at 1277, GCC at 1245, GCC at 1217, GCC at 1162, GCC at 1150, GCC at 1076, GCC at 954, GCC at 922, GCC at 758, GCC at 737, GCC at 721, GCC at 679, GCC at 615, GCC at 551, GCC at 545, GCC at 457, GCC at 342, GCC at 332, GCC at 104, GCC at 80, GCC at 52, GCC at 23, GCC at 12.
  18. GGCMr7ci: 85, GCC at 4436, GCC at 4384, GCC at 4216, GCC at 4211, GCC at 4057, GCC at 4038, GCC at 3983, GCC at 3979, GCC at 3952, GCC at 3940, GCC at 3886, GCC at 3834, GCC at 3776, GCC at 3733, GCC at 3684, GCC at 3673, GCC at 3546, GCC at 3511, GCC at 3495, GCC at 3446, GCC at 3360, GCC at 3327, GCC at 3299, GCC at 3128, GCC at 3113, GCC at 3062, GCC at 3008, GCC at 2992, GCC at 2884, GCC at 2755, GCC at 2742, GCC at 2711, GCC at 2667, GCC at 2637, GCC at 2497, GCC at 2483, GCC at 2441, GCC at 2299, GCC at 2288, GCC at 2267, GCC at 2228, GCC at 2193, GCC at 2173, GCC at 2145, GCC at 2141, GCC at 2100, GCC at 2027, GCC at 1965, GCC at 1936, GCC at 1908, GCC at 1838, GCC at 1770, GCC at 1767, GCC at 1757, GCC at 1731, GCC at 1711, GCC at 1617, GCC at 1542, GCC at 1416, GCC at 1404, GCC at 1347, GCC at 1336, GCC at 1236, GCC at 1224, GCC at 1192, GCC at 1099, GCC at 1030, GCC at 923, GCC at 823, GCC at 802, GCC at 777, GCC at 750, GCC at 725, GCC at 674, GCC at 654, GCC at 615, GCC at 580, GCC at 557, GCC at 480, GCC at 421, GCC at 408, GCC at 268, GCC at 189, GCC at 171, GCC at 147.
  19. GGCMr8ci: 88, GCC at 4557, GCC at 4503, GCC at 4435, GCC at 4401, GCC at 4375, GCC at 4315, GCC at 4138, GCC at 4018, GCC at 3895, GCC at 3863, GCC at 3858, GCC at 3850, GCC at 3823, GCC at 3811, GCC at 3708, GCC at 3582, GCC at 3453, GCC at 3346, GCC at 3338, GCC at 3313, GCC at 3287, GCC at 3178, GCC at 3152, GCC at 3136, GCC at 3108, GCC at 3056, GCC at 2931, GCC at 2902, GCC at 2884, GCC at 2836, GCC at 2788, GCC at 2784, GCC at 2718, GCC at 2689, GCC at 2667, GCC at 2611, GCC at 2573, GCC at 2569, GCC at 2518, GCC at 2515, GCC at 2483, GCC at 2473, GCC at 2470, GCC at 2458, GCC at 2275, GCC at 2249, GCC at 2029, GCC at 2012, GCC at 1989, GCC at 1899, GCC at 1857, GCC at 1716, GCC at 1660, GCC at 1637, GCC at 1568, GCC at 1525, GCC at 1448, GCC at 1378, GCC at 1306, GCC at 1271, GCC at 1263, GCC at 1207, GCC at 1182, GCC at 1126, GCC at 1098, GCC at 1089, GCC at 1005, GCC at 945, GCC at 938, GCC at 902, GCC at 893, GCC at 835, GCC at 758, GCC at 746, GCC at 714, GCC at 693, GCC at 680, GCC at 669, GCC at 641, GCC at 600, GCC at 421, GCC at 382, GCC at 340, GCC at 160, GCC at 146, GCC at 132, GCC at 125, GCC at 47.
  20. GGCMr9ci: 88, GCC at 4521, GCC at 4516, GCC at 4489, GCC at 4446, GCC at 4368, GCC at 4307, GCC at 4096, GCC at 4075, GCC at 4007, GCC at 3980, GCC at 3914, GCC at 3903, GCC at 3881, GCC at 3870, GCC at 3860, GCC at 3825, GCC at 3739, GCC at 3568, GCC at 3551, GCC at 3437, GCC at 3399, GCC at 3343, GCC at 3324, GCC at 3262, GCC at 3197, GCC at 2949, GCC at 2938, GCC at 2809, GCC at 2799, GCC at 2761, GCC at 2756, GCC at 2666, GCC at 2663, GCC at 2641, GCC at 2555, GCC at 2546, GCC at 2449, GCC at 2446, GCC at 2369, GCC at 2320, GCC at 2154, GCC at 2109, GCC at 2070, GCC at 2001, GCC at 1911, GCC at 1840, GCC at 1825, GCC at 1811, GCC at 1796, GCC at 1683, GCC at 1670, GCC at 1609, GCC at 1558, GCC at 1503, GCC at 1482, GCC at 1415, GCC at 1412, GCC at 1365, GCC at 1307, GCC at 1263, GCC at 1178, GCC at 1130, GCC at 1116, GCC at 1034, GCC at 989, GCC at 980, GCC at 973, GCC at 870, GCC at 843, GCC at 817, GCC at 730, GCC at 722, GCC at 687, GCC at 629, GCC at 566, GCC at 560, GCC at 542, GCC at 506, GCC at 418, GCC at 361, GCC at 334, GCC at 318, GCC at 261, GCC at 252, GCC at 188, GCC at 165, GCC at 75, GCC at 53.

GGCr arbitrary (evens) (4560-2846) UTRs

  1. GGCMr0: GGC at 4536, GGC at 4467, GGC at 4453, GGC at 4334, GGC at 4263, GGC at 4250, GGC at 4239, GGC at 4157, GGC at 4078, GGC at 3997, GGC at 3987, GGC at 3920, GGC at 3900, GGC at 3869, GGC at 3852, GGC at 3739, GGC at 3715, GGC at 3671, GGC at 3642, GGC at 3547, GGC at 3544, GGC at 3487, GGC at 3455, GGC at 3444, GGC at 3424, GGC at 3403, GGC at 3347, GGC at 3290, GGC at 3245, GGC at 3234, GGC at 3222, GGC at 3197, GGC at 3112, GGC at 3088, GGC at 3045, GGC at 3004, GGC at 2994, GGC at 2978, GGC at 2886.
  2. GGCMr2: GGC at 4546, GGC at 4538, GGC at 4500, GGC at 4440, GGC at 4430, GGC at 4392, GGC at 4348, GGC at 4345, GGC at 4283, GGC at 4228, GGC at 4206, GGC at 4092, GGC at 3995, GGC at 3973, GGC at 3912, GGC at 3749, GGC at 3698, GGC at 3681, GGC at 3670, GGC at 3648, GGC at 3639, GGC at 3606, GGC at 3593, GGC at 3522, GGC at 3413, GGC at 3295, GGC at 3263, GGC at 3255, GGC at 3203, GGC at 3048, GGC at 3005.
  3. GGCMr4: GGC at 4560, GGC at 4494, GGC at 4400, GGC at 4389, GGC at 4340, GGC at 4247, GGC at 4227, GGC at 4204, GGC at 4177, GGC at 4137, GGC at 4109, GGC at 4106, GGC at 4089, GGC at 4077, GGC at 4011, GGC at 3959, GGC at 3843, GGC at 3744, GGC at 3729, GGC at 3580, GGC at 3570, GGC at 3556, GGC at 3547, GGC at 3464, GGC at 3459, GGC at 3265, GGC at 3232, GGC at 3161, GGC at 3100, GGC at 3021, GGC at 2983, GGC at 2925, GGC at 2911, GGC at 2848.
  4. GGCMr6: GGC at 4549, GGC at 4455, GGC at 4434, GGC at 4431, GGC at 4387, GGC at 4348, GGC at 4286, GGC at 4252, GGC at 4204, GGC at 4045, GGC at 3912, GGC at 3795, GGC at 3743, GGC at 3722, GGC at 3635, GGC at 3571, GGC at 3544, GGC at 3426, GGC at 3371, GGC at 3275, GGC at 3247, GGC at 3235, GGC at 3200, GGC at 3134, GGC at 3083, GGC at 2977.
  5. GGCMr8: GGC at 4528, GGC at 4502, GGC at 4318, GGC at 4280, GGC at 4277, GGC at 4162, GGC at 4132, GGC at 4119, GGC at 4088, GGC at 4040, GGC at 4008, GGC at 3959, GGC at 3894, GGC at 3862, GGC at 3810, GGC at 3806, GGC at 3736, GGC at 3668, GGC at 3632, GGC at 3536, GGC at 3531, GGC at 3357, GGC at 3319, GGC at 3286, GGC at 3257, GGC at 3248, GGC at 3240, GGC at 3182, GGC at 3135, GGC at 3107, GGC at 2951.
  6. GGCMr0ci: GCC at 4468, GCC at 4454, GCC at 4335, GCC at 4330, GCC at 4291, GCC at 4264, GCC at 4257, GCC at 4251, GCC at 4246, GCC at 4158, GCC at 4075, GCC at 4066, GCC at 3998, GCC at 3988, GCC at 3890, GCC at 3886, GCC at 3853, GCC at 3793, GCC at 3770, GCC at 3740, GCC at 3672, GCC at 3429, GCC at 3407, GCC at 3404, GCC at 3383, GCC at 3348, GCC at 3328, GCC at 3300, GCC at 3239, GCC at 3213, GCC at 3041, GCC at 3000, GCC at 2869, GCC at 2862.
  7. GGCMr2ci: GCC at 4539, GCC at 4509, GCC at 4503, GCC at 4431, GCC at 4393, GCC at 4229, GCC at 4207, GCC at 4179, GCC at 4164, GCC at 4149, GCC at 4134, GCC at 4093, GCC at 4075, GCC at 4053, GCC at 4019, GCC at 3996, GCC at 3957, GCC at 3936, GCC at 3913, GCC at 3896, GCC at 3869, GCC at 3861, GCC at 3831, GCC at 3778, GCC at 3750, GCC at 3736, GCC at 3699, GCC at 3640, GCC at 3586, GCC at 3583, GCC at 3346, GCC at 3256, GCC at 3102, GCC at 3073, GCC at 2972.
  8. GGCMr4ci: GCC at 4530, GCC at 4343, GCC at 4284, GCC at 4280, GCC at 4205, GCC at 4063, GCC at 4008, GCC at 3834, GCC at 3761, GCC at 3655, GCC at 3571, GCC at 3557, GCC at 3541, GCC at 3492, GCC at 3391, GCC at 3271, GCC at 3266, GCC at 3243, GCC at 3226, GCC at 3162, GCC at 3103, GCC at 3083, GCC at 3022, GCC at 2986, GCC at 2928, GCC at 2912, GCC at 2849.
  9. GGCMr6ci: 77, GCC at 4550, GCC at 4388, GCC at 4337, GCC at 4283, GCC at 4276, GCC at 4220, GCC at 3994, GCC at 3980, GCC at 3913, GCC at 3905, GCC at 3802, GCC at 3723, GCC at 3509, GCC at 3410, GCC at 3404, GCC at 3400, GCC at 3384, GCC at 3319, GCC at 3313, GCC at 3253, GCC at 3227, GCC at 3201, GCC at 3080, GCC at 3032.
  10. GGCMr8ci: GCC at 4557, GCC at 4503, GCC at 4435, GCC at 4401, GCC at 4375, GCC at 4315, GCC at 4138, GCC at 4018, GCC at 3895, GCC at 3863, GCC at 3858, GCC at 3850, GCC at 3823, GCC at 3811, GCC at 3708, GCC at 3582, GCC at 3453, GCC at 3346, GCC at 3338, GCC at 3313, GCC at 3287, GCC at 3178, GCC at 3152, GCC at 3136, GCC at 3108, GCC at 3056, GCC at 2931, GCC at 2902, GCC at 2884.

GGCr alternate (odds) (4560-2846) UTRs

  1. GGCMr1: GGC at 4550, GGC at 4520, GGC at 4477, GGC at 4471, GGC at 4305, GGC at 4296, GGC at 4185, GGC at 4141, GGC at 4135, GGC at 4085, GGC at 4054, GGC at 4046, GGC at 3940, GGC at 3920, GGC at 3914, GGC at 3816, GGC at 3801, GGC at 3736, GGC at 3709, GGC at 3705, GGC at 3674, GGC at 3659, GGC at 3615, GGC at 3574, GGC at 3526, GGC at 3403, GGC at 3234, GGC at 3211, GGC at 3202, GGC at 3154, GGC at 3135, GGC at 3104, GGC at 2922.
  2. GGCMr3: GGC at 4534, GGC at 4502, GGC at 4393, GGC at 4143, GGC at 4109, GGC at 4030, GGC at 3950, GGC at 3923, GGC at 3856, GGC at 3837, GGC at 3649, GGC at 3635, GGC at 3606, GGC at 3496, GGC at 3413, GGC at 3403, GGC at 3370, GGC at 3328, GGC at 3208, GGC at 3155, GGC at 3144, GGC at 3108, GGC at 3004, GGC at 2991, GGC at 2909, GGC at 2875, GGC at 2866.
  3. GGCMr5: GGC at 4485, GGC at 4449, GGC at 4435, GGC at 4422, GGC at 4385, GGC at 4370, GGC at 4279, GGC at 4262, GGC at 4174, GGC at 3957, GGC at 3952, GGC at 3909, GGC at 3903, GGC at 3882, GGC at 3840, GGC at 3812, GGC at 3787, GGC at 3772, GGC at 3752, GGC at 3743, GGC at 3586, GGC at 3573, GGC at 3556, GGC at 3504, GGC at 3454, GGC at 3179, GGC at 3161, GGC at 3074, GGC at 3062, GGC at 3053, GGC at 3006, GGC at 2932, GGC at 2929.
  4. GGCMr7: GGC at 4425, GGC at 4403, GGC at 4383, GGC at 4276, GGC at 4160, GGC at 4019, GGC at 4015, GGC at 3982, GGC at 3951, GGC at 3877, GGC at 3846, GGC at 3720, GGC at 3698, GGC at 3672, GGC at 3615, GGC at 3536, GGC at 3515, GGC at 3508, GGC at 3498, GGC at 3488, GGC at 3427, GGC at 3389, GGC at 3380, GGC at 3359, GGC at 3342, GGC at 3298, GGC at 3253, GGC at 3078, GGC at 3024.
  5. GGCMr9: GGC at 4513, GGC at 4506, GGC at 4367, GGC at 4359, GGC at 4343, GGC at 4047, GGC at 3996, GGC at 3979, GGC at 3930, GGC at 3913, GGC at 3902, GGC at 3896, GGC at 3893, GGC at 3878, GGC at 3810, GGC at 3788, GGC at 3628, GGC at 3625, GGC at 3598, GGC at 3536, GGC at 3342, GGC at 3323, GGC at 3238, GGC at 3162, GGC at 3001, GGC at 2980, GGC at 2944, GGC at 2937, GGC at 2857, GGC at 2852.
  6. GGCMr1ci: GCC at 4557, GCC at 4478, GCC at 4459, GCC at 4423, GCC at 4327, GCC at 4287, GCC at 4212, GCC at 4181, GCC at 4131, GCC at 4112, GCC at 4086, GCC at 3921, GCC at 3904, GCC at 3849, GCC at 3830, GCC at 3802, GCC at 3766, GCC at 3758, GCC at 3706, GCC at 3660, GCC at 3625, GCC at 3527, GCC at 3497, GCC at 3404, GCC at 3390, GCC at 3306, GCC at 3294, GCC at 3128, GCC at 3105, GCC at 2926, GCC at 2917, GCC at 2881, GCC at 2859.
  7. GGCMr3ci: GCC at 4547, GCC at 4535, GCC at 4517, GCC at 4503, GCC at 4279, GCC at 4144, GCC at 4138, GCC at 4135, GCC at 4076, GCC at 4031, GCC at 3792, GCC at 3746, GCC at 3725, GCC at 3450, GCC at 3421, GCC at 3397, GCC at 3376, GCC at 3234, GCC at 3109, GCC at 3079, GCC at 3040, GCC at 2992, GCC at 2894, GCC at 2882, GCC at 2867.
  8. GGCMr5ci: GCC at 4557, GCC at 4552, GCC at 4527, GCC at 4444, GCC at 4436, GCC at 4423, GCC at 4413, GCC at 4380, GCC at 4364, GCC at 4353, GCC at 4350, GCC at 4265, GCC at 4228, GCC at 4099, GCC at 4095, GCC at 3910, GCC at 3847, GCC at 3813, GCC at 3790, GCC at 3775, GCC at 3755, GCC at 3727, GCC at 3642, GCC at 3634, GCC at 3574, GCC at 3546, GCC at 3472, GCC at 3321, GCC at 3316, GCC at 3135, GCC at 3075, GCC at 3063, GCC at 3020, GCC at 2965, GCC at 2908, GCC at 2875, GCC at 2856.
  9. GGCMr7ci: GCC at 4436, GCC at 4384, GCC at 4216, GCC at 4211, GCC at 4057, GCC at 4038, GCC at 3983, GCC at 3979, GCC at 3952, GCC at 3940, GCC at 3886, GCC at 3834, GCC at 3776, GCC at 3733, GCC at 3684, GCC at 3673, GCC at 3546, GCC at 3511, GCC at 3495, GCC at 3446, GCC at 3360, GCC at 3327, GCC at 3299, GCC at 3128, GCC at 3113, GCC at 3062, GCC at 3008, GCC at 2992, GCC at 2884.
  10. GGCMr9ci: GCC at 4521, GCC at 4516, GCC at 4489, GCC at 4446, GCC at 4368, GCC at 4307, GCC at 4096, GCC at 4075, GCC at 4007, GCC at 3980, GCC at 3914, GCC at 3903, GCC at 3881, GCC at 3870, GCC at 3860, GCC at 3825, GCC at 3739, GCC at 3568, GCC at 3551, GCC at 3437, GCC at 3399, GCC at 3343, GCC at 3324, GCC at 3262, GCC at 3197, GCC at 2949, GCC at 2938.

GGCr arbitrary negative direction (evens) (2846-2811) core promoters

  1. GGCMr0: GGC at 2844, GGC at 2838, GGC at 2816.
  2. GGCMr2: GGC at 2816.
  3. GGCMr8: GGC at 2824.
  4. GGCMr0ci: GCC at 2834, GCC at 2817.
  5. GGCMr4ci: GCC at 2826.
  6. GGCMr6ci: GCC at 2840.
  7. GGCMr8ci: GCC at 2836.

GGCr alternate negative direction (odds) (2846-2811) core promoters

  1. GGCMr1: GGC at 2821.
  2. GGCMr1ci: GCC at 2824.
  3. GGCMr5ci: GCC at 2815.

GGCr arbitrary positive direction (odds) (4445-4265) core promoters

  1. GGCMr1: GGC at 4305, GGC at 4296.
  2. GGCMr3: GGC at 4393.
  3. GGCMr5: GGC at 4435, GGC at 4422, GGC at 4385, GGC at 4370, GGC at 4279.
  4. GGCMr7: GGC at 4425, GGC at 4403, GGC at 4383, GGC at 4276.
  5. GGCMr9: GGC at 4367, GGC at 4359, GGC at 4343.
  6. GGCMr1ci: GCC at 4423, GCC at 4327, GCC at 4287.
  7. GGCMr3ci: GCC at 4279.
  8. GGCMr5ci: GCC at 4444, GCC at 4436, GCC at 4423, GCC at 4413, GCC at 4380, GCC at 4364, GCC at 4353, GCC at 4350, GCC at 4265.
  9. GGCMr7ci: GCC at 4436, GCC at 4384.
  10. GGCMr9ci: GCC at 4368, GCC at 4307.

GGCr alternate positive direction (evens) (4445-4265) core promoters

  1. GGCMr0: GGC at 4334.
  2. GGCMr2: GGC at 4440, GGC at 4430, GGC at 4392, GGC at 4348, GGC at 4345, GGC at 4283.
  3. GGCMr4: GGC at 4400, GGC at 4389, GGC at 4340.
  4. GGCMr6: GGC at 4434, GGC at 4431, GGC at 4387, GGC at 4348, GGC at 4286.
  5. GGCMr8: GGC at 4318, GGC at 4280, GGC at 4277.
  6. GGCMr0ci: GCC at 4335, GCC at 4330, GCC at 4291.
  7. GGCMr2ci: GCC at 4431, GCC at 4393.
  8. GGCMr4ci: GCC at 4343, GCC at 4284, GCC at 4280.
  9. GGCMr6ci: GCC at 4388, GCC at 4337, GCC at 4283, GCC at 4276.
  10. GGCMr8ci: GCC at 4435, GCC at 4401, GCC at 4375, GCC at 4315.

GGCr arbitrary negative direction (evens) (2811-2596) proximal promoters

  1. GGCMr0: GGC at 2767, GGC at 2741, GGC at 2708, GGC at 2640.
  2. GGCMr2: GGC at 2698, GGC at 2616.
  3. GGCMr4: GGC at 2804, GGC at 2680, GGC at 2625, GGC at 2614.
  4. GGCMr6: GGC at 2695.
  5. GGCMr8: GGC at 2741, GGC at 2682, GGC at 2677, GGC at 2633.
  6. GGCMr0ci: GCC at 2770, GCC at 2713, GCC at 2709, GCC at 2686, GCC at 2641.
  7. GGCMr2ci: GCC at 2774, GCC at 2699, GCC at 2620, GCC at 2598.
  8. GGCMr4ci: GCC at 2681, GCC at 2670, GCC at 2628, GCC at 2615.
  9. GGCMr6ci: GCC at 2715, GCC at 2610.
  10. GGCMr8ci: GCC at 2788, GCC at 2784, GCC at 2718, GCC at 2689, GCC at 2667, GCC at 2611.

GGCr alternate negative direction (odds) (2811-2596) proximal promoters

  1. GGCMr1: GGC at 2703, GGC at 2649.
  2. GGCMr3: GGC at 2724, GGC at 2717, GGC at 2694, GGC at 2658, GGC at 2620.
  3. GGCMr5: GGC at 2792, GGC at 2755, GGC at 2687, GGC at 2672, GGC at 2615.
  4. GGCMr7: GGC at 2733, GGC at 2614.
  5. GGCMr9: GGC at 2680, GGC at 2654.
  6. GGCMr1ci: GCC at 2782, GCC at 2732, GCC at 2718, GCC at 2664, GCC at 2635, GCC at 2596.
  7. GGCMr3ci: GCC at 2792, GCC at 2789, GCC at 2708.
  8. GGCMr5ci: GCC at 2800, GCC at 2756, GCC at 2688, GCC at 2661, GCC at 2616, GCC at 2604.
  9. GGCMr7ci: GCC at 2755, GCC at 2742, GCC at 2711, GCC at 2667, GCC at 2637.
  10. GGCMr9ci: GCC at 2809, GCC at 2799, GCC at 2761, GCC at 2756, GCC at 2666, GCC at 2663, GCC at 2641.

GGCr arbitrary positive direction (odds) (4265-4050) proximal promoters

  1. GGCMr1: GGC at 4185, GGC at 4141, GGC at 4135, GGC at 4085, GGC at 4054.
  2. GGCMr3: GGC at 4143, GGC at 4109.
  3. GGCMr5: GGC at 4262, GGC at 4174.
  4. GGCMr7: GGC at 4160.
  5. GGCMr1ci: GCC at 4212, GCC at 4181, GCC at 4131, GCC at 4112, GCC at 4086.
  6. GGCMr3ci: GCC at 4144, GCC at 4138, GCC at 4135, GCC at 4076.
  7. GGCMr5ci: GCC at 4265, GCC at 4228, GCC at 4099, GCC at 4095.
  8. GGCMr7ci: GCC at 4216, GCC at 4211, GCC at 4057.
  9. GGCMr9ci: GCC at 4096, GCC at 4075.

GGCr alternate positive direction (evens) (4265-4050) proximal promoters

  1. GGCMr0: GGC at 4263, GGC at 4250, GGC at 4239, GGC at 4157, GGC at 4078.
  2. GGCMr2: GGC at 4228, GGC at 4206, GGC at 4092.
  3. GGCMr4: GGC at 4247, GGC at 4227, GGC at 4204, GGC at 4177, GGC at 4137, GGC at 4109, GGC at 4106, GGC at 4089, GGC at 4077.
  4. GGCMr6: GGC at 4252, GGC at 4204.
  5. GGCMr8: GGC at 4162, GGC at 4132, GGC at 4119, GGC at 4088.
  6. GGCMr0ci: GCC at 4264, GCC at 4257, GCC at 4251, GCC at 4246, GCC at 4158, GCC at 4075, GCC at 4066.
  7. GGCMr2ci: GCC at 4229, GCC at 4207, GCC at 4179, GCC at 4164, GCC at 4149, GCC at 4134, GCC at 4093, GCC at 4075, GCC at 4053.
  8. GGCMr4ci: GCC at 4205, GCC at 4063.
  9. GGCMr6ci: GCC at 4220.
  10. GGCMr8ci: GCC at 4138.

GGCr arbitrary negative direction (evens) (2596-1) distal promoters

  1. GGCMr0: GGC at 2582, GGC at 2470, GGC at 2466, GGC at 2442, GGC at 2436, GGC at 2385, GGC at 2347, GGC at 2281, GGC at 2124, GGC at 2065, GGC at 2030, GGC at 1846, GGC at 1741, GGC at 1716, GGC at 1651, GGC at 1631, GGC at 1603, GGC at 1590, GGC at 1419, GGC at 1389, GGC at 1347, GGC at 1287, GGC at 1252, GGC at 1247, GGC at 1219, GGC at 1202, GGC at 1073, GGC at 1028, GGC at 967, GGC at 823, GGC at 787, GGC at 582, GGC at 525, GGC at 486, GGC at 305, GGC at 138.
  2. GGCMr2: GGC at 2498, GGC at 2449, GGC at 2282, GGC at 2275, GGC at 2260, GGC at 2073, GGC at 2034, GGC at 1933, GGC at 1922, GGC at 1908, GGC at 1728, GGC at 1607, GGC at 1303, GGC at 1221, GGC at 1180, GGC at 1000, GGC at 975, GGC at 962, GGC at 870, GGC at 832, GGC at 817, GGC at 798, GGC at 772, GGC at 686, GGC at 625, GGC at 613, GGC at 547, GGC at 542, GGC at 529, GGC at 460, GGC at 429, GGC at 422, GGC at 331, GGC at 327, GGC at 171, GGC at 111, GGC at 74, GGC at 27, GGC at 14.
  3. GGCMr4: GGC at 2531, GGC at 2520, GGC at 2384, GGC at 2238, GGC at 2066, GGC at 1991, GGC at 1950, GGC at 1904, GGC at 1881, GGC at 1876, GGC at 1872, GGC at 1625, GGC at 1582, GGC at 1546, GGC at 1482, GGC at 1468, GGC at 1457, GGC at 1389, GGC at 1365, GGC at 1341, GGC at 1154, GGC at 1113, GGC at 1076, GGC at 1025, GGC at 1018, GGC at 959, GGC at 954, GGC at 870, GGC at 810, GGC at 787, GGC at 713, GGC at 709, GGC at 688, GGC at 653, GGC at 637, GGC at 524, GGC at 449, GGC at 351, GGC at 218, GGC at 186, GGC at 155, GGC at 59.
  4. GGCMr6: GGC at 2574, GGC at 2558, GGC at 2518, GGC at 2497, GGC at 2428, GGC at 2320, GGC at 2301, GGC at 2288, GGC at 2199, GGC at 2157, GGC at 2091, GGC at 1973, GGC at 1958, GGC at 1950, GGC at 1894, GGC at 1854, GGC at 1799, GGC at 1687, GGC at 1665, GGC at 1613, GGC at 1592, GGC at 1579, GGC at 1574, GGC at 1565, GGC at 1561, GGC at 1535, GGC at 1480, GGC at 1466, GGC at 1457, GGC at 1451, GGC at 1409, GGC at 1400, GGC at 1366, GGC at 1332, GGC at 1327, GGC at 1276, GGC at 1232, GGC at 1216, GGC at 1161, GGC at 1147, GGC at 1075, GGC at 964, GGC at 935, GGC at 865, GGC at 736, GGC at 720, GGC at 685, GGC at 649, GGC at 571, GGC at 550, GGC at 477, GGC at 465, GGC at 251, GGC at 221, GGC at 122, GGC at 111, GGC at 84, GGC at 74, GGC at 22, GGC at 11.
  5. GGCMr8: GGC at 2592, GGC at 2469, GGC at 2457, GGC at 2423, GGC at 2354, GGC at 2334, GGC at 2282, GGC at 2028, GGC at 1981, GGC at 1883, GGC at 1856, GGC at 1781, GGC at 1715, GGC at 1691, GGC at 1636, GGC at 1599, GGC at 1567, GGC at 1544, GGC at 1524, GGC at 1511, GGC at 1410, GGC at 1386, GGC at 1276, GGC at 1206, GGC at 1088, GGC at 1017, GGC at 1004, GGC at 944, GGC at 937, GGC at 858, GGC at 834, GGC at 819, GGC at 754, GGC at 713, GGC at 668, GGC at 661, GGC at 640, GGC at 599, GGC at 486, GGC at 381, GGC at 297, GGC at 258, GGC at 239, GGC at 205, GGC at 186, GGC at 159, GGC at 131.
  6. GGCMr0ci: GCC at 2437, GCC at 2405, GCC at 2401, GCC at 2386, GCC at 2380, GCC at 2377, GCC at 2366, GCC at 2313, GCC at 2266, GCC at 2212, GCC at 2159, GCC at 2125, GCC at 1944, GCC at 1888, GCC at 1880, GCC at 1760, GCC at 1681, GCC at 1652, GCC at 1632, GCC at 1621, GCC at 1384, GCC at 1381, GCC at 1288, GCC at 1203, GCC at 1181, GCC at 1078, GCC at 1061, GCC at 1001, GCC at 912, GCC at 857, GCC at 806, GCC at 773, GCC at 583, GCC at 520, GCC at 445, GCC at 368, GCC at 341, GCC at 325, GCC at 306, GCC at 243, GCC at 164, GCC at 62, GCC at 35.
  7. GGCMr2ci: GCC at 2595, GCC at 2578, GCC at 2562, GCC at 2558, GCC at 2523, GCC at 2450, GCC at 2283, GCC at 2276, GCC at 2261, GCC at 2095, GCC at 2074, GCC at 2023, GCC at 1966, GCC at 1963, GCC at 1939, GCC at 1880, GCC at 1814, GCC at 1710, GCC at 1608, GCC at 1568, GCC at 1536, GCC at 1526, GCC at 1487, GCC at 1468, GCC at 1299, GCC at 1253, GCC at 1228, GCC at 1222, GCC at 1093, GCC at 950, GCC at 883, GCC at 799, GCC at 788, GCC at 759, GCC at 706, GCC at 689, GCC at 666, GCC at 639, GCC at 502, GCC at 439, GCC at 328, GCC at 205, GCC at 84, GCC at 75, GCC at 28.
  8. GGCMr4ci: GCC at 2532, GCC at 2521, GCC at 2353, GCC at 2342, GCC at 2331, GCC at 2219, GCC at 2212, GCC at 2141, GCC at 2104, GCC at 2047, GCC at 2022, GCC at 1984, GCC at 1975, GCC at 1930, GCC at 1905, GCC at 1867, GCC at 1845, GCC at 1838, GCC at 1712, GCC at 1547, GCC at 1517, GCC at 1400, GCC at 1373, GCC at 1358, GCC at 1280, GCC at 1199, GCC at 1164, GCC at 1092, GCC at 1089, GCC at 1086, GCC at 1077, GCC at 1047, GCC at 1031, GCC at 1022, GCC at 1019, GCC at 1010, GCC at 1005, GCC at 966, GCC at 876, GCC at 871, GCC at 865, GCC at 811, GCC at 805, GCC at 788, GCC at 765, GCC at 714, GCC at 584, GCC at 502, GCC at 460, GCC at 352, GCC at 297, GCC at 196, GCC at 187, GCC at 140, GCC at 94, GCC at 80, GCC at 77, GCC at 19, GCC at 14.
  9. GGCMr6ci: GCC at 2483, GCC at 2449, GCC at 2438, GCC at 2429, GCC at 2289, GCC at 2264, GCC at 2257, GCC at 2247, GCC at 2224, GCC at 2200, GCC at 2144, GCC at 2092, GCC at 2081, GCC at 2025, GCC at 1974, GCC at 1951, GCC at 1883, GCC at 1855, GCC at 1706, GCC at 1688, GCC at 1674, GCC at 1666, GCC at 1643, GCC at 1593, GCC at 1540, GCC at 1401, GCC at 1282, GCC at 1277, GCC at 1245, GCC at 1217, GCC at 1162, GCC at 1150, GCC at 1076, GCC at 954, GCC at 922, GCC at 758, GCC at 737, GCC at 721, GCC at 679, GCC at 615, GCC at 551, GCC at 545, GCC at 457, GCC at 342, GCC at 332, GCC at 104, GCC at 80, GCC at 52, GCC at 23, GCC at 12.
  10. GGCMr8ci: GCC at 2573, GCC at 2569, GCC at 2518, GCC at 2515, GCC at 2483, GCC at 2473, GCC at 2470, GCC at 2458, GCC at 2275, GCC at 2249, GCC at 2029, GCC at 2012, GCC at 1989, GCC at 1899, GCC at 1857, GCC at 1716, GCC at 1660, GCC at 1637, GCC at 1568, GCC at 1525, GCC at 1448, GCC at 1378, GCC at 1306, GCC at 1271, GCC at 1263, GCC at 1207, GCC at 1182, GCC at 1126, GCC at 1098, GCC at 1089, GCC at 1005, GCC at 945, GCC at 938, GCC at 902, GCC at 893, GCC at 835, GCC at 758, GCC at 746, GCC at 714, GCC at 693, GCC at 680, GCC at 669, GCC at 641, GCC at 600, GCC at 421, GCC at 382, GCC at 340, GCC at 160, GCC at 146, GCC at 132, GCC at 125, GCC at 47.

GGCr alternate negative direction (odds) (2596-1) distal promoters

  1. GGCMr1: GGC at 2543, GGC at 2521, GGC at 2515, GGC at 2385, GGC at 2275, GGC at 2191, GGC at 2103, GGC at 2073, GGC at 2056, GGC at 2049, GGC at 2016, GGC at 2001, GGC at 1987, GGC at 1913, GGC at 1901, GGC at 1689, GGC at 1477, GGC at 1464, GGC at 1364, GGC at 1348, GGC at 1324, GGC at 1283, GGC at 1150, GGC at 1113, GGC at 996, GGC at 989, GGC at 950, GGC at 913, GGC at 897, GGC at 848, GGC at 839, GGC at 821, GGC at 728, GGC at 720, GGC at 692, GGC at 682, GGC at 670, GGC at 663, GGC at 625, GGC at 587, GGC at 512, GGC at 504, GGC at 477, GGC at 445, GGC at 268, GGC at 144, GGC at 122, GGC at 76, GGC at 65.
  2. GGCMr3: GGC at 2575, GGC at 2534, GGC at 2510, GGC at 2390, GGC at 2354, GGC at 2343, GGC at 2310, GGC at 2191, GGC at 2163, GGC at 2051, GGC at 1987, GGC at 1967, GGC at 1954, GGC at 1940, GGC at 1926, GGC at 1922, GGC at 1907, GGC at 1895, GGC at 1879, GGC at 1764, GGC at 1609, GGC at 1590, GGC at 1548, GGC at 1517, GGC at 1494, GGC at 1477, GGC at 1455, GGC at 1442, GGC at 1439, GGC at 1211, GGC at 1183, GGC at 1114, GGC at 902, GGC at 868, GGC at 864, GGC at 852, GGC at 813, GGC at 775, GGC at 667, GGC at 646, GGC at 618, GGC at 520, GGC at 516, GGC at 397, GGC at 380, GGC at 228, GGC at 130, GGC at 83, GGC at 65.
  3. GGCMr5: GGC at 2590, GGC at 2530, GGC at 2392, GGC at 2363, GGC at 2346, GGC at 2166, GGC at 2032, GGC at 1992, GGC at 1987, GGC at 1965, GGC at 1922, GGC at 1832, GGC at 1797, GGC at 1700, GGC at 1597, GGC at 1494, GGC at 1433, GGC at 1424, GGC at 1387, GGC at 1347, GGC at 1232, GGC at 1216, GGC at 1183, GGC at 1131, GGC at 1081, GGC at 1046, GGC at 1028, GGC at 967, GGC at 963, GGC at 869, GGC at 804, GGC at 770, GGC at 742, GGC at 732, GGC at 685, GGC at 678, GGC at 675, GGC at 662, GGC at 640, GGC at 593, GGC at 582, GGC at 578, GGC at 567, GGC at 412, GGC at 355, GGC at 243, GGC at 215, GGC at 185, GGC at 179, GGC at 175, GGC at 68.
  4. GGCMr7: GGC at 2494, GGC at 2487, GGC at 2482, GGC at 2440, GGC at 2435, GGC at 2426, GGC at 2298, GGC at 2227, GGC at 2041, GGC at 1995, GGC at 1962, GGC at 1935, GGC at 1927, GGC at 1907, GGC at 1851, GGC at 1786, GGC at 1775, GGC at 1756, GGC at 1730, GGC at 1710, GGC at 1700, GGC at 1616, GGC at 1611, GGC at 1586, GGC at 1516, GGC at 1495, GGC at 1377, GGC at 1262, GGC at 1244, GGC at 1235, GGC at 1218, GGC at 1191, GGC at 1067, GGC at 1062, GGC at 1042, GGC at 1029, GGC at 913, GGC at 858, GGC at 832, GGC at 784, GGC at 774, GGC at 688, GGC at 653, GGC at 449, GGC at 222, GGC at 163, GGC at 12.
  5. GGCMr9: GGC at 2587, GGC at 2551, GGC at 2368, GGC at 2305, GGC at 2190, GGC at 2169, GGC at 2160, GGC at 2132, GGC at 2069, GGC at 2018, GGC at 2005, GGC at 1893, GGC at 1839, GGC at 1824, GGC at 1810, GGC at 1727, GGC at 1724, GGC at 1716, GGC at 1687, GGC at 1502, GGC at 1427, GGC at 1411, GGC at 1392, GGC at 1370, GGC at 1285, GGC at 1262, GGC at 1254, GGC at 1218, GGC at 1209, GGC at 1177, GGC at 1146, GGC at 1140, GGC at 1111, GGC at 1046, GGC at 1040, GGC at 979, GGC at 955, GGC at 896, GGC at 887, GGC at 816, GGC at 770, GGC at 763, GGC at 742, GGC at 640, GGC at 633, GGC at 628, GGC at 608, GGC at 565, GGC at 505, GGC at 487, GGC at 443, GGC at 340, GGC at 333, GGC at 299, GGC at 257, GGC at 216, GGC at 211, GGC at 187.
  6. GGCMr1ci: GCC at 2596, GCC at 2530, GCC at 2403, GCC at 2386, GCC at 2349, GCC at 2282, GCC at 2276, GCC at 2186, GCC at 2089, GCC at 2045, GCC at 2027, GCC at 2017, GCC at 2002, GCC at 1905, GCC at 1783, GCC at 1690, GCC at 1673, GCC at 1645, GCC at 1560, GCC at 1555, GCC at 1525, GCC at 1425, GCC at 1365, GCC at 1349, GCC at 1237, GCC at 1196, GCC at 1114, GCC at 1058, GCC at 1041, GCC at 1013, GCC at 951, GCC at 914, GCC at 898, GCC at 840, GCC at 721, GCC at 714, GCC at 664, GCC at 635, GCC at 628, GCC at 513, GCC at 505, GCC at 446, GCC at 421, GCC at 255, GCC at 228, GCC at 220, GCC at 187, GCC at 123, GCC at 77.
  7. GGCMr3ci: GCC at 2404, GCC at 2378, GCC at 2373, GCC at 2311, GCC at 2287, GCC at 2246, GCC at 2175, GCC at 2087, GCC at 1988, GCC at 1973, GCC at 1955, GCC at 1866, GCC at 1765, GCC at 1751, GCC at 1699, GCC at 1610, GCC at 1591, GCC at 1575, GCC at 1518, GCC at 1495, GCC at 1478, GCC at 1456, GCC at 1452, GCC at 1449, GCC at 1426, GCC at 1421, GCC at 1389, GCC at 1330, GCC at 1184, GCC at 1175, GCC at 1144, GCC at 1115, GCC at 929, GCC at 908, GCC at 869, GCC at 865, GCC at 861, GCC at 776, GCC at 752, GCC at 668, GCC at 651, GCC at 582, GCC at 554, GCC at 521, GCC at 484, GCC at 439, GCC at 398, GCC at 362, GCC at 280, GCC at 134, GCC at 117, GCC at 106, GCC at 50, GCC at 43, GCC at 29.
  8. GGCMr5ci: GCC at 2418, GCC at 2396, GCC at 2364, GCC at 2222, GCC at 1993, GCC at 1969, GCC at 1923, GCC at 1866, GCC at 1849, GCC at 1798, GCC at 1789, GCC at 1772, GCC at 1760, GCC at 1737, GCC at 1701, GCC at 1648, GCC at 1632, GCC at 1627, GCC at 1571, GCC at 1248, GCC at 1233, GCC at 1199, GCC at 1159, GCC at 1082, GCC at 1078, GCC at 987, GCC at 982, GCC at 870, GCC at 805, GCC at 792, GCC at 743, GCC at 701, GCC at 679, GCC at 594, GCC at 583, GCC at 479, GCC at 474, GCC at 436, GCC at 356, GCC at 349, GCC at 336, GCC at 289, GCC at 232, GCC at 186, GCC at 120, GCC at 83, GCC at 78, GCC at 69, GCC at 17, GCC at 7.
  9. GGCMr7ci: GCC at 2497, GCC at 2483, GCC at 2441, GCC at 2299, GCC at 2288, GCC at 2267, GCC at 2228, GCC at 2193, GCC at 2173, GCC at 2145, GCC at 2141, GCC at 2100, GCC at 2027, GCC at 1965, GCC at 1936, GCC at 1908, GCC at 1838, GCC at 1770, GCC at 1767, GCC at 1757, GCC at 1731, GCC at 1711, GCC at 1617, GCC at 1542, GCC at 1416, GCC at 1404, GCC at 1347, GCC at 1336, GCC at 1236, GCC at 1224, GCC at 1192, GCC at 1099, GCC at 1030, GCC at 923, GCC at 823, GCC at 802, GCC at 777, GCC at 750, GCC at 725, GCC at 674, GCC at 654, GCC at 615, GCC at 580, GCC at 557, GCC at 480, GCC at 421, GCC at 408, GCC at 268, GCC at 189, GCC at 171, GCC at 147.
  10. GGCMr9ci: GCC at 2555, GCC at 2546, GCC at 2449, GCC at 2446, GCC at 2369, GCC at 2320, GCC at 2154, GCC at 2109, GCC at 2070, GCC at 2001, GCC at 1911, GCC at 1840, GCC at 1825, GCC at 1811, GCC at 1796, GCC at 1683, GCC at 1670, GCC at 1609, GCC at 1558, GCC at 1503, GCC at 1482, GCC at 1415, GCC at 1412, GCC at 1365, GCC at 1307, GCC at 1263, GCC at 1178, GCC at 1130, GCC at 1116, GCC at 1034, GCC at 989, GCC at 980, GCC at 973, GCC at 870, GCC at 843, GCC at 817, GCC at 730, GCC at 722, GCC at 687, GCC at 629, GCC at 566, GCC at 560, GCC at 542, GCC at 506, GCC at 418, GCC at 361, GCC at 334, GCC at 318, GCC at 261, GCC at 252, GCC at 188, GCC at 165, GCC at 75, GCC at 53.

GGCr arbitrary positive direction (odds) (4050-1) distal promoters

  1. GGCMr1: GGC at 4046, GGC at 3940, GGC at 3920, GGC at 3914, GGC at 3816, GGC at 3801, GGC at 3736, GGC at 3709, GGC at 3705, GGC at 3674, GGC at 3659, GGC at 3615, GGC at 3574, GGC at 3526, GGC at 3403, GGC at 3234, GGC at 3211, GGC at 3202, GGC at 3154, GGC at 3135, GGC at 3104, GGC at 2922, GGC at 2821, GGC at 2703, GGC at 2649, GGC at 2543, GGC at 2521, GGC at 2515, GGC at 2385, GGC at 2275, GGC at 2191, GGC at 2103, GGC at 2073, GGC at 2056, GGC at 2049, GGC at 2016, GGC at 2001, GGC at 1987, GGC at 1913, GGC at 1901, GGC at 1689, GGC at 1477, GGC at 1464, GGC at 1364, GGC at 1348, GGC at 1324, GGC at 1283, GGC at 1150, GGC at 1113, GGC at 996, GGC at 989, GGC at 950, GGC at 913, GGC at 897, GGC at 848, GGC at 839, GGC at 821, GGC at 728, GGC at 720, GGC at 692, GGC at 682, GGC at 670, GGC at 663, GGC at 625, GGC at 587, GGC at 512, GGC at 504, GGC at 477, GGC at 445, GGC at 268, GGC at 144, GGC at 122, GGC at 76, GGC at 65.
  2. GGCMr3: GGC at 4030, GGC at 3950, GGC at 3923, GGC at 3856, GGC at 3837, GGC at 3649, GGC at 3635, GGC at 3606, GGC at 3496, GGC at 3413, GGC at 3403, GGC at 3370, GGC at 3328, GGC at 3208, GGC at 3155, GGC at 3144, GGC at 3108, GGC at 3004, GGC at 2991, GGC at 2909, GGC at 2875, GGC at 2866, GGC at 2724, GGC at 2717, GGC at 2694, GGC at 2658, GGC at 2620, GGC at 2575, GGC at 2534, GGC at 2510, GGC at 2390, GGC at 2354, GGC at 2343, GGC at 2310, GGC at 2191, GGC at 2163, GGC at 2051, GGC at 1987, GGC at 1967, GGC at 1954, GGC at 1940, GGC at 1926, GGC at 1922, GGC at 1907, GGC at 1895, GGC at 1879, GGC at 1764, GGC at 1609, GGC at 1590, GGC at 1548, GGC at 1517, GGC at 1494, GGC at 1477, GGC at 1455, GGC at 1442, GGC at 1439, GGC at 1211, GGC at 1183, GGC at 1114, GGC at 902, GGC at 868, GGC at 864, GGC at 852, GGC at 813, GGC at 775, GGC at 667, GGC at 646, GGC at 618, GGC at 520, GGC at 516, GGC at 397, GGC at 380, GGC at 228, GGC at 130, GGC at 83, GGC at 65.
  3. GGCMr5: GGC at 3957, GGC at 3952, GGC at 3909, GGC at 3903, GGC at 3882, GGC at 3840, GGC at 3812, GGC at 3787, GGC at 3772, GGC at 3752, GGC at 3743, GGC at 3586, GGC at 3573, GGC at 3556, GGC at 3504, GGC at 3454, GGC at 3179, GGC at 3161, GGC at 3074, GGC at 3062, GGC at 3053, GGC at 3006, GGC at 2932, GGC at 2929, GGC at 2792, GGC at 2755, GGC at 2687, GGC at 2672, GGC at 2615, GGC at 2590, GGC at 2530, GGC at 2392, GGC at 2363, GGC at 2346, GGC at 2166, GGC at 2032, GGC at 1992, GGC at 1987, GGC at 1965, GGC at 1922, GGC at 1832, GGC at 1797, GGC at 1700, GGC at 1597, GGC at 1494, GGC at 1433, GGC at 1424, GGC at 1387, GGC at 1347, GGC at 1232, GGC at 1216, GGC at 1183, GGC at 1131, GGC at 1081, GGC at 1046, GGC at 1028, GGC at 967, GGC at 963, GGC at 869, GGC at 804, GGC at 770, GGC at 742, GGC at 732, GGC at 685, GGC at 678, GGC at 675, GGC at 662, GGC at 640, GGC at 593, GGC at 582, GGC at 578, GGC at 567, GGC at 412, GGC at 355, GGC at 243, GGC at 215, GGC at 185, GGC at 179, GGC at 175, GGC at 68.
  4. GGCMr7: GGC at 4019, GGC at 4015, GGC at 3982, GGC at 3951, GGC at 3877, GGC at 3846, GGC at 3720, GGC at 3698, GGC at 3672, GGC at 3615, GGC at 3536, GGC at 3515, GGC at 3508, GGC at 3498, GGC at 3488, GGC at 3427, GGC at 3389, GGC at 3380, GGC at 3359, GGC at 3342, GGC at 3298, GGC at 3253, GGC at 3078, GGC at 3024, GGC at 2733, GGC at 2614, GGC at 2494, GGC at 2487, GGC at 2482, GGC at 2440, GGC at 2435, GGC at 2426, GGC at 2298, GGC at 2227, GGC at 2041, GGC at 1995, GGC at 1962, GGC at 1935, GGC at 1927, GGC at 1907, GGC at 1851, GGC at 1786, GGC at 1775, GGC at 1756, GGC at 1730, GGC at 1710, GGC at 1700, GGC at 1616, GGC at 1611, GGC at 1586, GGC at 1516, GGC at 1495, GGC at 1377, GGC at 1262, GGC at 1244, GGC at 1235, GGC at 1218, GGC at 1191, GGC at 1067, GGC at 1062, GGC at 1042, GGC at 1029, GGC at 913, GGC at 858, GGC at 832, GGC at 784, GGC at 774, GGC at 688, GGC at 653, GGC at 449, GGC at 222, GGC at 163, GGC at 12.
  5. GGCMr9: GGC at 4047, GGC at 3996, GGC at 3979, GGC at 3930, GGC at 3913, GGC at 3902, GGC at 3896, GGC at 3893, GGC at 3878, GGC at 3810, GGC at 3788, GGC at 3628, GGC at 3625, GGC at 3598, GGC at 3536, GGC at 3342, GGC at 3323, GGC at 3238, GGC at 3162, GGC at 3001, GGC at 2980, GGC at 2944, GGC at 2937, GGC at 2857, GGC at 2852, GGC at 2680, GGC at 2654, GGC at 2587, GGC at 2551, GGC at 2368, GGC at 2305, GGC at 2190, GGC at 2169, GGC at 2160, GGC at 2132, GGC at 2069, GGC at 2018, GGC at 2005, GGC at 1893, GGC at 1839, GGC at 1824, GGC at 1810, GGC at 1727, GGC at 1724, GGC at 1716, GGC at 1687, GGC at 1502, GGC at 1427, GGC at 1411, GGC at 1392, GGC at 1370, GGC at 1285, GGC at 1262, GGC at 1254, GGC at 1218, GGC at 1209, GGC at 1177, GGC at 1146, GGC at 1140, GGC at 1111, GGC at 1046, GGC at 1040, GGC at 979, GGC at 955, GGC at 896, GGC at 887, GGC at 816, GGC at 770, GGC at 763, GGC at 742, GGC at 640, GGC at 633, GGC at 628, GGC at 608, GGC at 565, GGC at 505, GGC at 487, GGC at 443, GGC at 340, GGC at 333, GGC at 299, GGC at 257, GGC at 216, GGC at 211, GGC at 187.
  6. GGCMr1ci: GCC at 3921, GCC at 3904, GCC at 3849, GCC at 3830, GCC at 3802, GCC at 3766, GCC at 3758, GCC at 3706, GCC at 3660, GCC at 3625, GCC at 3527, GCC at 3497, GCC at 3404, GCC at 3390, GCC at 3306, GCC at 3294, GCC at 3128, GCC at 3105, GCC at 2926, GCC at 2917, GCC at 2881, GCC at 2859, GCC at 2824, GCC at 2782, GCC at 2732, GCC at 2718, GCC at 2664, GCC at 2635, GCC at 2596, GCC at 2530, GCC at 2403, GCC at 2386, GCC at 2349, GCC at 2282, GCC at 2276, GCC at 2186, GCC at 2089, GCC at 2045, GCC at 2027, GCC at 2017, GCC at 2002, GCC at 1905, GCC at 1783, GCC at 1690, GCC at 1673, GCC at 1645, GCC at 1560, GCC at 1555, GCC at 1525, GCC at 1425, GCC at 1365, GCC at 1349, GCC at 1237, GCC at 1196, GCC at 1114, GCC at 1058, GCC at 1041, GCC at 1013, GCC at 951, GCC at 914, GCC at 898, GCC at 840, GCC at 721, GCC at 714, GCC at 664, GCC at 635, GCC at 628, GCC at 513, GCC at 505, GCC at 446, GCC at 421, GCC at 255, GCC at 228, GCC at 220, GCC at 187, GCC at 123, GCC at 77.
  7. GGCMr3ci: GCC at 4031, GCC at 3792, GCC at 3746, GCC at 3725, GCC at 3450, GCC at 3421, GCC at 3397, GCC at 3376, GCC at 3234, GCC at 3109, GCC at 3079, GCC at 3040, GCC at 2992, GCC at 2894, GCC at 2882, GCC at 2867, GCC at 2792, GCC at 2789, GCC at 2708, GCC at 2404, GCC at 2378, GCC at 2373, GCC at 2311, GCC at 2287, GCC at 2246, GCC at 2175, GCC at 2087, GCC at 1988, GCC at 1973, GCC at 1955, GCC at 1866, GCC at 1765, GCC at 1751, GCC at 1699, GCC at 1610, GCC at 1591, GCC at 1575, GCC at 1518, GCC at 1495, GCC at 1478, GCC at 1456, GCC at 1452, GCC at 1449, GCC at 1426, GCC at 1421, GCC at 1389, GCC at 1330, GCC at 1184, GCC at 1175, GCC at 1144, GCC at 1115, GCC at 929, GCC at 908, GCC at 869, GCC at 865, GCC at 861, GCC at 776, GCC at 752, GCC at 668, GCC at 651, GCC at 582, GCC at 554, GCC at 521, GCC at 484, GCC at 439, GCC at 398, GCC at 362, GCC at 280, GCC at 134, GCC at 117, GCC at 106, GCC at 50, GCC at 43, GCC at 29.
  8. GGCMr5ci: GCC at 3910, GCC at 3847, GCC at 3813, GCC at 3790, GCC at 3775, GCC at 3755, GCC at 3727, GCC at 3642, GCC at 3634, GCC at 3574, GCC at 3546, GCC at 3472, GCC at 3321, GCC at 3316, GCC at 3135, GCC at 3075, GCC at 3063, GCC at 3020, GCC at 2965, GCC at 2908, GCC at 2875, GCC at 2856, GCC at 2815, GCC at 2800, GCC at 2756, GCC at 2688, GCC at 2661, GCC at 2616, GCC at 2604, GCC at 2418, GCC at 2396, GCC at 2364, GCC at 2222, GCC at 1993, GCC at 1969, GCC at 1923, GCC at 1866, GCC at 1849, GCC at 1798, GCC at 1789, GCC at 1772, GCC at 1760, GCC at 1737, GCC at 1701, GCC at 1648, GCC at 1632, GCC at 1627, GCC at 1571, GCC at 1248, GCC at 1233, GCC at 1199, GCC at 1159, GCC at 1082, GCC at 1078, GCC at 987, GCC at 982, GCC at 870, GCC at 805, GCC at 792, GCC at 743, GCC at 701, GCC at 679, GCC at 594, GCC at 583, GCC at 479, GCC at 474, GCC at 436, GCC at 356, GCC at 349, GCC at 336, GCC at 289, GCC at 232, GCC at 186, GCC at 120, GCC at 83, GCC at 78, GCC at 69, GCC at 17, GCC at 7.
  9. GGCMr7ci: GCC at 4038, GCC at 3983, GCC at 3979, GCC at 3952, GCC at 3940, GCC at 3886, GCC at 3834, GCC at 3776, GCC at 3733, GCC at 3684, GCC at 3673, GCC at 3546, GCC at 3511, GCC at 3495, GCC at 3446, GCC at 3360, GCC at 3327, GCC at 3299, GCC at 3128, GCC at 3113, GCC at 3062, GCC at 3008, GCC at 2992, GCC at 2884, GCC at 2755, GCC at 2742, GCC at 2711, GCC at 2667, GCC at 2637, GCC at 2497, GCC at 2483, GCC at 2441, GCC at 2299, GCC at 2288, GCC at 2267, GCC at 2228, GCC at 2193, GCC at 2173, GCC at 2145, GCC at 2141, GCC at 2100, GCC at 2027, GCC at 1965, GCC at 1936, GCC at 1908, GCC at 1838, GCC at 1770, GCC at 1767, GCC at 1757, GCC at 1731, GCC at 1711, GCC at 1617, GCC at 1542, GCC at 1416, GCC at 1404, GCC at 1347, GCC at 1336, GCC at 1236, GCC at 1224, GCC at 1192, GCC at 1099, GCC at 1030, GCC at 923, GCC at 823, GCC at 802, GCC at 777, GCC at 750, GCC at 725, GCC at 674, GCC at 654, GCC at 615, GCC at 580, GCC at 557, GCC at 480, GCC at 421, GCC at 408, GCC at 268, GCC at 189, GCC at 171, GCC at 147.
  10. GGCMr9ci: GCC at 4007, GCC at 3980, GCC at 3914, GCC at 3903, GCC at 3881, GCC at 3870, GCC at 3860, GCC at 3825, GCC at 3739, GCC at 3568, GCC at 3551, GCC at 3437, GCC at 3399, GCC at 3343, GCC at 3324, GCC at 3262, GCC at 3197, GCC at 2949, GCC at 2938, GCC at 2809, GCC at 2799, GCC at 2761, GCC at 2756, GCC at 2666, GCC at 2663, GCC at 2641, GCC at 2555, GCC at 2546, GCC at 2449, GCC at 2446, GCC at 2369, GCC at 2320, GCC at 2154, GCC at 2109, GCC at 2070, GCC at 2001, GCC at 1911, GCC at 1840, GCC at 1825, GCC at 1811, GCC at 1796, GCC at 1683, GCC at 1670, GCC at 1609, GCC at 1558, GCC at 1503, GCC at 1482, GCC at 1415, GCC at 1412, GCC at 1365, GCC at 1307, GCC at 1263, GCC at 1178, GCC at 1130, GCC at 1116, GCC at 1034, GCC at 989, GCC at 980, GCC at 973, GCC at 870, GCC at 843, GCC at 817, GCC at 730, GCC at 722, GCC at 687, GCC at 629, GCC at 566, GCC at 560, GCC at 542, GCC at 506, GCC at 418, GCC at 361, GCC at 334, GCC at 318, GCC at 261, GCC at 252, GCC at 188, GCC at 165, GCC at 75, GCC at 53.

GGCr alternate positive direction (evens) (4050-1) distal promoters

  1. GGCMr0: GGC at 3997, GGC at 3987, GGC at 3920, GGC at 3900, GGC at 3869, GGC at 3852, GGC at 3739, GGC at 3715, GGC at 3671, GGC at 3642, GGC at 3547, GGC at 3544, GGC at 3487, GGC at 3455, GGC at 3444, GGC at 3424, GGC at 3403, GGC at 3347, GGC at 3290, GGC at 3245, GGC at 3234, GGC at 3222, GGC at 3197, GGC at 3112, GGC at 3088, GGC at 3045, GGC at 3004, GGC at 2994, GGC at 2978, GGC at 2886, GGC at 2844, GGC at 2838, GGC at 2816, GGC at 2767, GGC at 2741, GGC at 2708, GGC at 2640, GGC at 2582, GGC at 2470, GGC at 2466, GGC at 2442, GGC at 2436, GGC at 2385, GGC at 2347, GGC at 2281, GGC at 2124, GGC at 2065, GGC at 2030, GGC at 1846, GGC at 1741, GGC at 1716, GGC at 1651, GGC at 1631, GGC at 1603, GGC at 1590, GGC at 1419, GGC at 1389, GGC at 1347, GGC at 1287, GGC at 1252, GGC at 1247, GGC at 1219, GGC at 1202, GGC at 1073, GGC at 1028, GGC at 967, GGC at 823, GGC at 787, GGC at 582, GGC at 525, GGC at 486, GGC at 305, GGC at 138.
  2. GGCMr2: GGC at 3995, GGC at 3973, GGC at 3912, GGC at 3749, GGC at 3698, GGC at 3681, GGC at 3670, GGC at 3648, GGC at 3639, GGC at 3606, GGC at 3593, GGC at 3522, GGC at 3413, GGC at 3295, GGC at 3263, GGC at 3255, GGC at 3203, GGC at 3048, GGC at 3005, GGC at 2816, GGC at 2698, GGC at 2616, GGC at 2498, GGC at 2449, GGC at 2282, GGC at 2275, GGC at 2260, GGC at 2073, GGC at 2034, GGC at 1933, GGC at 1922, GGC at 1908, GGC at 1728, GGC at 1607, GGC at 1303, GGC at 1221, GGC at 1180, GGC at 1000, GGC at 975, GGC at 962, GGC at 870, GGC at 832, GGC at 817, GGC at 798, GGC at 772, GGC at 686, GGC at 625, GGC at 613, GGC at 547, GGC at 542, GGC at 529, GGC at 460, GGC at 429, GGC at 422, GGC at 331, GGC at 327, GGC at 171, GGC at 111, GGC at 74, GGC at 27, GGC at 14.
  3. GGCMr4: GGC at 4011, GGC at 3959, GGC at 3843, GGC at 3744, GGC at 3729, GGC at 3580, GGC at 3570, GGC at 3556, GGC at 3547, GGC at 3464, GGC at 3459, GGC at 3265, GGC at 3232, GGC at 3161, GGC at 3100, GGC at 3021, GGC at 2983, GGC at 2925, GGC at 2911, GGC at 2848, GGC at 2804, GGC at 2680, GGC at 2625, GGC at 2614, GGC at 2531, GGC at 2520, GGC at 2384, GGC at 2238, GGC at 2066, GGC at 1991, GGC at 1950, GGC at 1904, GGC at 1881, GGC at 1876, GGC at 1872, GGC at 1625, GGC at 1582, GGC at 1546, GGC at 1482, GGC at 1468, GGC at 1457, GGC at 1389, GGC at 1365, GGC at 1341, GGC at 1154, GGC at 1113, GGC at 1076, GGC at 1025, GGC at 1018, GGC at 959, GGC at 954, GGC at 870, GGC at 810, GGC at 787, GGC at 713, GGC at 709, GGC at 688, GGC at 653, GGC at 637, GGC at 524, GGC at 449, GGC at 351, GGC at 218, GGC at 186, GGC at 155, GGC at 59.
  4. GGCMr6: GGC at 4045, GGC at 3912, GGC at 3795, GGC at 3743, GGC at 3722, GGC at 3635, GGC at 3571, GGC at 3544, GGC at 3426, GGC at 3371, GGC at 3275, GGC at 3247, GGC at 3235, GGC at 3200, GGC at 3134, GGC at 3083, GGC at 2977, GGC at 2695, GGC at 2574, GGC at 2558, GGC at 2518, GGC at 2497, GGC at 2428, GGC at 2320, GGC at 2301, GGC at 2288, GGC at 2199, GGC at 2157, GGC at 2091, GGC at 1973, GGC at 1958, GGC at 1950, GGC at 1894, GGC at 1854, GGC at 1799, GGC at 1687, GGC at 1665, GGC at 1613, GGC at 1592, GGC at 1579, GGC at 1574, GGC at 1565, GGC at 1561, GGC at 1535, GGC at 1480, GGC at 1466, GGC at 1457, GGC at 1451, GGC at 1409, GGC at 1400, GGC at 1366, GGC at 1332, GGC at 1327, GGC at 1276, GGC at 1232, GGC at 1216, GGC at 1161, GGC at 1147, GGC at 1075, GGC at 964, GGC at 935, GGC at 865, GGC at 736, GGC at 720, GGC at 685, GGC at 649, GGC at 571, GGC at 550, GGC at 477, GGC at 465, GGC at 251, GGC at 221, GGC at 122, GGC at 111, GGC at 84, GGC at 74, GGC at 22, GGC at 11.
  5. GGCMr8: GGC at 4040, GGC at 4008, GGC at 3959, GGC at 3894, GGC at 3862, GGC at 3810, GGC at 3806, GGC at 3736, GGC at 3668, GGC at 3632, GGC at 3536, GGC at 3531, GGC at 3357, GGC at 3319, GGC at 3286, GGC at 3257, GGC at 3248, GGC at 3240, GGC at 3182, GGC at 3135, GGC at 3107, GGC at 2951, GGC at 2824, GGC at 2741, GGC at 2682, GGC at 2677, GGC at 2633, GGC at 2592, GGC at 2469, GGC at 2457, GGC at 2423, GGC at 2354, GGC at 2334, GGC at 2282, GGC at 2028, GGC at 1981, GGC at 1883, GGC at 1856, GGC at 1781, GGC at 1715, GGC at 1691, GGC at 1636, GGC at 1599, GGC at 1567, GGC at 1544, GGC at 1524, GGC at 1511, GGC at 1410, GGC at 1386, GGC at 1276, GGC at 1206, GGC at 1088, GGC at 1017, GGC at 1004, GGC at 944, GGC at 937, GGC at 858, GGC at 834, GGC at 819, GGC at 754, GGC at 713, GGC at 668, GGC at 661, GGC at 640, GGC at 599, GGC at 486, GGC at 381, GGC at 297, GGC at 258, GGC at 239, GGC at 205, GGC at 186, GGC at 159, GGC at 131.
  6. GGCMr0ci: GCC at 3998, GCC at 3988, GCC at 3890, GCC at 3886, GCC at 3853, GCC at 3793, GCC at 3770, GCC at 3740, GCC at 3672, GCC at 3429, GCC at 3407, GCC at 3404, GCC at 3383, GCC at 3348, GCC at 3328, GCC at 3300, GCC at 3239, GCC at 3213, GCC at 3041, GCC at 3000, GCC at 2869, GCC at 2862, GCC at 2834, GCC at 2817, GCC at 2770, GCC at 2713, GCC at 2709, GCC at 2686, GCC at 2641, GCC at 2437, GCC at 2405, GCC at 2401, GCC at 2386, GCC at 2380, GCC at 2377, GCC at 2366, GCC at 2313, GCC at 2266, GCC at 2212, GCC at 2159, GCC at 2125, GCC at 1944, GCC at 1888, GCC at 1880, GCC at 1760, GCC at 1681, GCC at 1652, GCC at 1632, GCC at 1621, GCC at 1384, GCC at 1381, GCC at 1288, GCC at 1203, GCC at 1181, GCC at 1078, GCC at 1061, GCC at 1001, GCC at 912, GCC at 857, GCC at 806, GCC at 773, GCC at 583, GCC at 520, GCC at 445, GCC at 368, GCC at 341, GCC at 325, GCC at 306, GCC at 243, GCC at 164, GCC at 62, GCC at 35.
  7. GGCMr2ci: GCC at 4019, GCC at 3996, GCC at 3957, GCC at 3936, GCC at 3913, GCC at 3896, GCC at 3869, GCC at 3861, GCC at 3831, GCC at 3778, GCC at 3750, GCC at 3736, GCC at 3699, GCC at 3640, GCC at 3586, GCC at 3583, GCC at 3346, GCC at 3256, GCC at 3102, GCC at 3073, GCC at 2972, GCC at 2774, GCC at 2699, GCC at 2620, GCC at 2598, GCC at 2595, GCC at 2578, GCC at 2562, GCC at 2558, GCC at 2523, GCC at 2450, GCC at 2283, GCC at 2276, GCC at 2261, GCC at 2095, GCC at 2074, GCC at 2023, GCC at 1966, GCC at 1963, GCC at 1939, GCC at 1880, GCC at 1814, GCC at 1710, GCC at 1608, GCC at 1568, GCC at 1536, GCC at 1526, GCC at 1487, GCC at 1468, GCC at 1299, GCC at 1253, GCC at 1228, GCC at 1222, GCC at 1093, GCC at 950, GCC at 883, GCC at 799, GCC at 788, GCC at 759, GCC at 706, GCC at 689, GCC at 666, GCC at 639, GCC at 502, GCC at 439, GCC at 328, GCC at 205, GCC at 84, GCC at 75, GCC at 28.
  8. GGCMr4ci: GCC at 4008, GCC at 3834, GCC at 3761, GCC at 3655, GCC at 3571, GCC at 3557, GCC at 3541, GCC at 3492, GCC at 3391, GCC at 3271, GCC at 3266, GCC at 3243, GCC at 3226, GCC at 3162, GCC at 3103, GCC at 3083, GCC at 3022, GCC at 2986, GCC at 2928, GCC at 2912, GCC at 2849, GCC at 2826, GCC at 2681, GCC at 2670, GCC at 2628, GCC at 2615, GCC at 2532, GCC at 2521, GCC at 2353, GCC at 2342, GCC at 2331, GCC at 2219, GCC at 2212, GCC at 2141, GCC at 2104, GCC at 2047, GCC at 2022, GCC at 1984, GCC at 1975, GCC at 1930, GCC at 1905, GCC at 1867, GCC at 1845, GCC at 1838, GCC at 1712, GCC at 1547, GCC at 1517, GCC at 1400, GCC at 1373, GCC at 1358, GCC at 1280, GCC at 1199, GCC at 1164, GCC at 1092, GCC at 1089, GCC at 1086, GCC at 1077, GCC at 1047, GCC at 1031, GCC at 1022, GCC at 1019, GCC at 1010, GCC at 1005, GCC at 966, GCC at 876, GCC at 871, GCC at 865, GCC at 811, GCC at 805, GCC at 788, GCC at 765, GCC at 714, GCC at 584, GCC at 502, GCC at 460, GCC at 352, GCC at 297, GCC at 196, GCC at 187, GCC at 140, GCC at 94, GCC at 80, GCC at 77, GCC at 19, GCC at 14.
  9. GGCMr6ci: GCC at 3994, GCC at 3980, GCC at 3913, GCC at 3905, GCC at 3802, GCC at 3723, GCC at 3509, GCC at 3410, GCC at 3404, GCC at 3400, GCC at 3384, GCC at 3319, GCC at 3313, GCC at 3253, GCC at 3227, GCC at 3201, GCC at 3080, GCC at 3032, GCC at 2840, GCC at 2715, GCC at 2610, GCC at 2483, GCC at 2449, GCC at 2438, GCC at 2429, GCC at 2289, GCC at 2264, GCC at 2257, GCC at 2247, GCC at 2224, GCC at 2200, GCC at 2144, GCC at 2092, GCC at 2081, GCC at 2025, GCC at 1974, GCC at 1951, GCC at 1883, GCC at 1855, GCC at 1706, GCC at 1688, GCC at 1674, GCC at 1666, GCC at 1643, GCC at 1593, GCC at 1540, GCC at 1401, GCC at 1282, GCC at 1277, GCC at 1245, GCC at 1217, GCC at 1162, GCC at 1150, GCC at 1076, GCC at 954, GCC at 922, GCC at 758, GCC at 737, GCC at 721, GCC at 679, GCC at 615, GCC at 551, GCC at 545, GCC at 457, GCC at 342, GCC at 332, GCC at 104, GCC at 80, GCC at 52, GCC at 23, GCC at 12.
  10. GGCMr8ci: GCC at 4018, GCC at 3895, GCC at 3863, GCC at 3858, GCC at 3850, GCC at 3823, GCC at 3811, GCC at 3708, GCC at 3582, GCC at 3453, GCC at 3346, GCC at 3338, GCC at 3313, GCC at 3287, GCC at 3178, GCC at 3152, GCC at 3136, GCC at 3108, GCC at 3056, GCC at 2931, GCC at 2902, GCC at 2884, GCC at 2836, GCC at 2788, GCC at 2784, GCC at 2718, GCC at 2689, GCC at 2667, GCC at 2611, GCC at 2573, GCC at 2569, GCC at 2518, GCC at 2515, GCC at 2483, GCC at 2473, GCC at 2470, GCC at 2458, GCC at 2275, GCC at 2249, GCC at 2029, GCC at 2012, GCC at 1989, GCC at 1899, GCC at 1857, GCC at 1716, GCC at 1660, GCC at 1637, GCC at 1568, GCC at 1525, GCC at 1448, GCC at 1378, GCC at 1306, GCC at 1271, GCC at 1263, GCC at 1207, GCC at 1182, GCC at 1126, GCC at 1098, GCC at 1089, GCC at 1005, GCC at 945, GCC at 938, GCC at 902, GCC at 893, GCC at 835, GCC at 758, GCC at 746, GCC at 714, GCC at 693, GCC at 680, GCC at 669, GCC at 641, GCC at 600, GCC at 421, GCC at 382, GCC at 340, GCC at 160, GCC at 146, GCC at 132, GCC at 125, GCC at 47.

GGC triplet analysis and results

Main article: Complex locus A1BG and ZNF497 § GGC triplets

"The transcription factors Uga3, Dal81 and Leu3 belong to the class III family (Zn(II)2Cys6 proteins), and they recognize highly related sequences rich in GGC triplets [15]."[1]

Reals or randoms Promoters direction Numbers Strands Occurrences Averages (± 0.1)
Reals UTR negative 79 2 39.5 39.5 ± 33.5 (--6,+-73)
Randoms UTR arbitrary negative 310 10 31.0 30.65
Randoms UTR alternate negative 303 10 30.3 30.65
Reals Core negative 0 2 0 0
Randoms Core arbitrary negative 10 10 1 6.5
Randoms Core alternate negative 3 10 0.3 6.5
Reals Core positive 15 2 7.5 7.5 ± 1.5 (-+9,++6)
Randoms Core arbitrary positive 32 10 3.2 3.3
Randoms Core alternate positive 34 10 3.4 3.3
Reals Proximal negative 13 2 6.5 6.5 ± 4.5 (--2,+-11)
Randoms Proximal arbitrary negative 36 10 3.6 3.95
Randoms Proximal alternate negative 43 10 4.3 3.95
Reals Proximal positive 12 2 6 6 ± 2 (-+8,++4)
Randoms Proximal arbitrary positive 28 10 2.8 3.55
Randoms Proximal alternate positive 43 10 4.3 3.55
Reals Distal negative 154 2 77 77 ± 39 (--38,+-116)
Randoms Distal arbitrary negative 473 10 47.3 49.3
Randoms Distal alternate negative 513 10 51.3 49.3
Reals Distal positive 384 2 192 192 ± 68 (-+260,++124)
Randoms Distal arbitrary positive 778 10 77.8 75.45
Randoms Distal alternate positive 731 10 73.1 75.45

Comparison:

The occurrences of real GGC triplet UTRs and negative proximals are outside than the randoms, positive cores and positive distals are greater than randoms, positive proximals overlap the randoms low end. This suggests that the real GGC triplets are likely active or activable.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

See also

References

  1. ↑ 1.0 1.1 1.2 1.3 Marcos Palavecino-Ruiz, Mariana Bermudez-Moretti and Susana Correa-Garcia (12 October 2017). "Unravelling the transcriptional regulation of Saccharomyces cerevisiae UGA genes: the dual role of transcription factor Leu3" (PDF). Microbiology. 163: 1692–1701. doi:10.1099/mic.0.000560. Retrieved 20 April 2021.
  2. ↑ 2.0 2.1 Uyyala Srinivasulu Reddy, Michael Arock, A.V. Reddy (20 April 2020). "Discovering of gapped motifs using particle swarm optimisation". International Journal of Computational Intelligence in Bioinformatics and Systems Biology. 2 (1): 1–21. doi:10.1504/IJCIBSB.2020.106858. Retrieved 20 April 2021.
  3. ↑ 3.0 3.1 3.2 Nanbiao Long, Thomas Orasch, Shizhu Zhang, Lu Gao, Xiaoling Xu, Peter Hortschansky, Jing Ye, Fenli Zhang, Kai Xu, Fabio Gsaller, Maria Straßburger, Ulrike Binder, Thorsten Heinekamp, Axel A. Brakhage, Hubertus Haas, Ling Lu (26 October 2018). "The Zn2Cys6-type transcription factor LeuB cross-links regulation of leucine biosynthesis and iron acquisition in Aspergillus fumigatus". PLOS Genetics. 14 (10): e1007762. doi:10.1371/journal.pgen.1007762. Retrieved 20 April 2021.

External links


Retrieved from "https://www.wikidoc.org/index.php?title=GGC_triplet_gene_transcriptions&oldid=1735884"