Heat-responsive element gene transcriptions

Associate Editor(s)-in-Chief: Henry A. Hoff

Long terminal repeats "LTRs of heat-responsive COPIA78/ONSEN [...] retrotransposon in Arabidopsis thaliana [7, 8, 17], contain a cluster of four nGAAn motifs forming a heat-responsive element (HRE) [18]. During heat stress (HS), the ONSEN HRE is bound by heat shock factor A 2 (HSFA2), which triggers its transcriptional activity."^[1]

Human genes

Interactions

Consensus sequences

Heat-responsive elements (AAAAAATTTC).^[2]

HRE samplings

Copying an apparent consensus sequence of the HRE AAAAAATTTC and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence AAAAAATTTC (starting with SuccessablesHRE.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for AAAAAATTTC, 0.
negative strand, positive direction, looking for AAAAAATTTC, 0.
positive strand, negative direction, looking for AAAAAATTTC, 0.
positive strand, positive direction, looking for AAAAAATTTC, 0.
complement, negative strand, negative direction, looking for TTTTTTAAAG, 0.
complement, negative strand, positive direction, looking for TTTTTTAAAG, 0.
complement, positive strand, negative direction, looking for TTTTTTAAAG, 0.
complement, positive strand, positive direction, looking for TTTTTTAAAG, 0.
inverse complement, negative strand, negative direction, looking for GAAATTTTTT, 0.
inverse complement, negative strand, positive direction, looking for GAAATTTTTT, 0.
inverse complement, positive strand, negative direction, looking for GAAATTTTTT, 0.
inverse complement, positive strand, positive direction, looking for GAAATTTTTT, 0.
inverse negative strand, negative direction, looking for CTTTAAAAAA, 0.
inverse negative strand, positive direction, looking for CTTTAAAAAA, 0.
inverse positive strand, negative direction, looking for CTTTAAAAAA, 0.
inverse positive strand, positive direction, looking for CTTTAAAAAA, 0.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

References

↑ Björn Pietzenuk, Catarine Markus, Hervé Gaubert, Navratan Bagwan, Aldo Merotto, Etienne Bucher & Ales Pecinka (11 October 2016). "Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements". Genome Biology. 17: 209. doi:10.1186/s13059-016-1072-3. Retrieved 14 September 2020.
↑ Bhaskar Sharma & Joemar Taganna (12 June 2020). "Genome-wide analysis of the U-box E3 ubiquitin ligase enzyme gene family in tomato". Scientific Reports. 10 (9581). doi:10.1038/s41598-020-66553-1. PMID 32533036 Check |pmid= value (help). Retrieved 27 August 2020.

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transcriptions MYB recognition element gene transcriptions Myelocytomatosis transcription factor gene transcriptions Myocyte enhancer factor gene transcriptions N-boxes Ndt80p gene transcriptions Nuclear factor 1 Nuclear factor 𝜿B Nuclear factor gene transcriptions Nuclear factor of activated T cell gene transcriptions (NFAT) Nuclear factor Y gene transcriptions Nutrient-sensing response element gene transcriptions Oaf1p gene transcriptions ORE1 binding site gene transcriptions p53 response element gene transcriptions P63 DNA-binding site gene transcriptions P box gene transcriptions Pdr1,3p gene transcriptions Peroxisome proliferator hormone response element gene transcriptions Phosphate starvation-response transcription factor gene transcriptions Pollen1 element gene transcriptions Polycomb response element gene transcriptions Preinitiation complex Preinitiation complex gene transcriptions Pribnow box gene transcriptions Prolamin box gene transcriptions Promoter gene transcriptions 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transcriptions Ste12p gene transcriptions Sterol response element gene transcriptions Sucrose box gene transcriptions Synaptic Activity-Responsive Elements TACTAAC box gene transcriptions TAGteam gene transcriptions Tapetum box gene transcriptions TATA binding protein associated factor gene transcriptions TATA binding protein gene transcriptions TATA box gene transcriptions TAT box gene transcriptions TATC box gene transcriptions Tbf1 regulatory factor gene transcriptions T box gene transcriptions TCCACCATA element gene transcriptions TC element gene transcriptions TCT gene transcriptions TEA consensus sequence gene transcriptions Tec1p gene transcriptions Telomeric repeat DNA-binding factor gene transcriptions Tetradecanoylphorbol-13-acetate response element gene transcriptions TGF-β control elements (TCEs) TGF-β inhibitory elements (TIEs) Thyroid hormone response element gene transcriptions Transcriptional regulation Transcription bubble gene transcriptions Transcription factor gene transcriptions Transcription factor 3 gene transcriptions Transcription factory gene transcriptions Transcription start site gene transcriptions Translational control sequence gene transcriptions U box gene transcriptions Unfolded protein response element gene transcriptions Upstream response element gene transcriptions Upstream stimulatory factor gene transcriptions UTR promoter gene transcriptions V and P box gene transcriptions V box gene transcriptions Vhr1p gene transcriptions Vitamin D response element gene transcriptions W box gene transcriptions X box gene transcriptions Xbp1p gene transcriptions X core promoter element gene transcriptions Xenobiotic response element gene transcriptions Xenobiotic responsive element gene transcriptions Yap1p,2p gene transcriptions Y box gene transcriptions YY1 gene transcriptions Zap1p gene transcriptions Z box gene transcriptions Zinc responsive element gene transcriptions