Xbp1p gene transcriptions

Associate Editor(s)-in-Chief: Henry A. Hoff

Transcription factor for the XhoI site-binding protein 1 protein (Xbp1p) binds to the promoters of CLN1, CYS3, SMF2 induced by stress of starvation to function as a transcriptional repressor.^[1]

Human genes

Interactions

Consensus sequences

The upstream activating sequence (UAS) for the Xbp1p is GcCTCGA(G/A)G(C/A)g(a/g).^[2]

Xbp samplings

Copying 5'-GCCTCG-3' in "⌘F" yields none between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence GcCTCGA(G/A)G(C/A)g(a/g) (starting with SuccessablesAAA.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
positive strand, negative direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
positive strand, positive direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
negative strand, positive direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
complement, negative strand, negative direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
complement, positive strand, negative direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
complement, positive strand, positive direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
complement, negative strand, positive direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
inverse complement, negative strand, negative direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
inverse complement, positive strand, negative direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
inverse complement, positive strand, positive direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
inverse complement, negative strand, positive direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
inverse negative strand, negative direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.
inverse positive strand, negative direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.
inverse positive strand, positive direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.
inverse negative strand, positive direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

References

↑ Bernard Mai and Linda Breeden (November 1997). "Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/Mbp1 family". Molecular and Cellular Biology. 17 (11): 6491–6501. doi:10.1128/MCB.17.11.6491. Retrieved 10 March 2021.
↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

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