Mig1p gene transcriptions: Difference between revisions

Revision as of 14:35, 6 February 2021

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Interactions

Consensus sequences

The upstream activating sequence (UAS) for the Mig1p transcription factor is 5'-SYGGGG-3' or 5'-(C/G)(C/T)GGGG-3'.^[1]

Samplings

Copying 5'-CTGGGG-3' in "⌘F" yields none between ZSCAN22 and A1BG and four between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence (C/G)(C/T)GGGG (starting with SuccessablesMig.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for (C/G)(C/T)GGGG, 4, GTGGGG at 4445, GTGGGG at 3058, GTGGGG at 2763, GTGGGG at 750.
positive strand, negative direction, looking for (C/G)(C/T)GGGG, 1, CTGGGG at 3037.
positive strand, positive direction, looking for (C/G)(C/T)GGGG, 8, GTGGGG at 4327, GTGGGG at 4285, CTGGGG at 4218, GTGGGG at 3614, GTGGGG at 2019, CCGGGG at 391, CCGGGG at 373, CCGGGG at 201.
negative strand, positive direction, looking for (C/G)(C/T)GGGG, 14, CTGGGG at 4426, CTGGGG at 4411, GTGGGG at 4396, GTGGGG at 4042, GTGGGG at 3542, GTGGGG at 3451, CTGGGG at 1955, CTGGGG at 1866, GCGGGG at 1708, GCGGGG at 1027, GCGGGG at 491, CTGGGG at 349, CTGGGG at 279, GTGGGG at 55.
complement, negative strand, negative direction, looking for (C/G)(A/G)CCCC, 1, GACCCC at 3037.
complement, positive strand, negative direction, looking for (C/G)(A/G)CCCC, 4, CACCCC at 4445, CACCCC at 3058, CACCCC at 2763, CACCCC at 750.
complement, positive strand, positive direction, looking for (C/G)(A/G)CCCC, 14, GACCCC at 4426, GACCCC at 4411, CACCCC at 4396, CACCCC at 4042, CACCCC at 3542, CACCCC at 3451, GACCCC at 1955, GACCCC at 1866, CGCCCC at 1708, CGCCCC at 1027, CGCCCC at 491, GACCCC at 349, GACCCC at 279, CACCCC at 55.
complement, negative strand, positive direction, looking for (C/G)(A/G)CCCC, 8, CACCCC at 4327, CACCCC at 4285, GACCCC at 4218, CACCCC at 3614, CACCCC at 2019, GGCCCC at 391, GGCCCC at 373, GGCCCC at 201.
inverse complement, negative strand, negative direction, looking for TTTTTTTT, 0.
inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0.
inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
inverse negative strand, negative direction, looking for GGGG(C/T)(C/G), 2, GGGGTC at 4447, GGGGTC at 2765.
inverse positive strand, negative direction, looking for GGGG(C/T)(C/G), 1, GGGGTC at 205.
inverse positive strand, positive direction, looking for GGGG(C/T)(C/G), 10, GGGGTC at 4329, GGGGTG at 4287, GGGGCC at 4002, GGGGTG at 3941, GGGGCC at 3557, GGGGTC at 3015, GGGGTC at 1892, GGGGCG at 393, GGGGCC at 375, GGGGTC at 203.
inverse negative strand, positive direction, looking for GGGG(C/T)(C/G), 8, GGGGCG at 4428, GGGGTC at 4413, GGGGTG at 4398, GGGGCC at 4304, GGGGTC at 1957, GGGGCG at 1792, GGGGTC at 1710, GGGGCC at 248.

Mig UTR gene transcriptions

Negative strand, negative direction: GTGGGG at 4445, GTGGGG at 3058

Positive strand, negative direction: CTGGGG at 3037

Mig core promoters

Positive strand, positive direction: GTGGGG at 4327, GTGGGG at 4285

Mig proximal promoters

Negative strand, negative direction: GTGGGG at 2763

Positive strand, positive direction: CTGGGG at 4218

Mig distal promoters

Negative strand, negative direction: GTGGGG at 750

Positive strand, positive direction: GTGGGG at 3614, GTGGGG at 2019, CCGGGG at 391, CCGGGG at 373, CCGGGG at 201

References

↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

External links

[Tang-1] Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

[1]

@@ Line 39: / Line 39: @@
 # inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
 # inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
-# inverse negative strand, negative direction, looking for GGGG(C/T)(C/G), 0.
+# inverse negative strand, negative direction, looking for GGGG(C/T)(C/G), 2, GGGGTC at 4447, GGGGTC at 2765.
-# inverse positive strand, negative direction, looking for AAAAAAAA, 0.
+# inverse positive strand, negative direction, looking for GGGG(C/T)(C/G), 1, GGGGTC at 205.
-# inverse positive strand, positive direction, looking for AAAAAAAA, 0.
+# inverse positive strand, positive direction, looking for GGGG(C/T)(C/G), 10, GGGGTC at 4329, GGGGTG at 4287, GGGGCC at 4002, GGGGTG at 3941, GGGGCC at 3557, GGGGTC at 3015, GGGGTC at 1892, GGGGCG at 393, GGGGCC at 375, GGGGTC at 203.
 # inverse negative strand, positive direction, looking for GGGG(C/T)(C/G), 8, GGGGCG at 4428, GGGGTC at 4413, GGGGTG at 4398, GGGGCC at 4304, GGGGTC at 1957, GGGGCG at 1792, GGGGTC at 1710, GGGGCC at 248.

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Hybrid C, T boxes Hypoxia-inducible factor gene transcriptions Hypoxia response elements I box gene transcriptions Initiator element gene transcriptions Initiator-like element gene transcriptions Inositol/choline-responsive elements Interaction gene transcriptions Interferon regulatory factors Inverse copy gene transcriptions Jasmonic acid-responsive element gene transcriptions K-boxes Kozak sequence gene transcriptions Kruppel-associated box gene transcriptions Krüppel-like factor gene transcriptions L box gene transcriptions Leu3 gene transcriptions M35 box gene transcriptions MADS box gene transcriptions Maf recognition element gene transcriptions M box gene transcriptions Mcm1 regulatory factor gene transcriptions Met31p box gene transcriptions Metal responsive element gene transcriptions Middle sporulation element gene transcriptions Mig1p gene transcriptions Model samplings Motif ten element gene transcriptions Msn2,4p gene transcriptions Musashi binding element gene transcriptions MYB recognition element gene transcriptions Myelocytomatosis transcription factor gene transcriptions Myocyte enhancer factor gene transcriptions N-boxes Ndt80p gene transcriptions Nuclear factor 1 Nuclear factor 𝜿B Nuclear factor gene transcriptions Nuclear factor of activated T cell gene transcriptions (NFAT) Nuclear factor Y gene transcriptions Nutrient-sensing response element gene transcriptions Oaf1p gene transcriptions ORE1 binding site gene transcriptions p53 response element gene transcriptions P63 DNA-binding site gene transcriptions P box gene transcriptions Pdr1,3p gene transcriptions Peroxisome proliferator hormone response element gene transcriptions Phosphate starvation-response transcription factor gene transcriptions Pollen1 element gene transcriptions Polycomb response element gene transcriptions Preinitiation complex Preinitiation complex gene transcriptions Pribnow box gene transcriptions Prolamin box gene transcriptions Promoter gene transcriptions Proximal promoter gene transcriptions Promoter occurrence gene transcriptions Pyrimidine box gene transcriptions Q element gene transcriptions Rap1 regulatory factor gene transcriptions Reb1 general regulatory factor gene transcriptions Retinoblastoma control element gene transcriptions Retinoic acid response element gene transcriptions Rgt1p gene transcriptions Rlm1p gene transcriptions RNA polymerase II gene transcriptions RNA polymerase II holoenzyme complex Root specific element gene transcriptions ROR-response element gene transcriptions Rox1p gene transcriptions Rpn4p gene transcriptions R response element gene transcriptions SARE gene transcriptions Seed-specific element gene transcriptions Serum response element gene transcriptions Servenius sequence gene transcriptions Shoot specific element gene transcriptions Sip4p gene transcriptions Smp1p gene transcriptions Sp1 gene transcriptions Spaceflight gene expressions Specificity protein gene transcriptions STAT gene transcriptions Ste12p gene transcriptions Sterol response element gene transcriptions Sucrose box gene transcriptions Synaptic Activity-Responsive Elements TACTAAC box gene transcriptions TAGteam gene transcriptions Tapetum box gene transcriptions TATA binding protein associated factor gene transcriptions TATA binding protein gene transcriptions TATA box gene transcriptions TAT box gene transcriptions TATC box gene transcriptions Tbf1 regulatory factor gene transcriptions T box gene transcriptions TCCACCATA element gene transcriptions TC element gene transcriptions TCT gene transcriptions TEA consensus sequence gene transcriptions Tec1p gene transcriptions Telomeric repeat DNA-binding factor gene transcriptions Tetradecanoylphorbol-13-acetate response element gene transcriptions TGF-β control elements (TCEs) TGF-β inhibitory elements (TIEs) Thyroid hormone response element gene transcriptions Transcriptional regulation Transcription bubble gene transcriptions Transcription factor gene transcriptions Transcription factor 3 gene transcriptions Transcription factory gene transcriptions Transcription start site gene transcriptions Translational control sequence gene transcriptions U box gene transcriptions Unfolded protein response element gene transcriptions Upstream response element gene transcriptions Upstream stimulatory factor gene transcriptions UTR promoter gene transcriptions V and P box gene transcriptions V box gene transcriptions Vhr1p gene transcriptions Vitamin D response element gene transcriptions W box gene transcriptions X box gene transcriptions Xbp1p gene transcriptions X core promoter element gene transcriptions Xenobiotic response element gene transcriptions Xenobiotic responsive element gene transcriptions Yap1p,2p gene transcriptions Y box gene transcriptions YY1 gene transcriptions Zap1p gene transcriptions Z box gene transcriptions Zinc responsive element gene transcriptions