GGC triplet gene transcriptions: Difference between revisions

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==GGC triplet random dataset samplings==
==GGC triplet random dataset samplings==


# RDr0: 0.
# GGCMr0: 82, GGC at 4536, GGC at 4467, GGC at 4453, GGC at 4334, GGC at 4263, GGC at 4250, GGC at 4239, GGC at 4157, GGC at 4078, GGC at 3997, GGC at 3987, GGC at 3920, GGC at 3900, GGC at 3869, GGC at 3852, GGC at 3739, GGC at 3715, GGC at 3671, GGC at 3642, GGC at 3547, GGC at 3544, GGC at 3487, GGC at 3455, GGC at 3444, GGC at 3424, GGC at 3403, GGC at 3347, GGC at 3290, GGC at 3245, GGC at 3234, GGC at 3222, GGC at 3197, GGC at 3112, GGC at 3088, GGC at 3045, GGC at 3004, GGC at 2994, GGC at 2978, GGC at 2886, GGC at 2844, GGC at 2838, GGC at 2816, GGC at 2767, GGC at 2741, GGC at 2708, GGC at 2640, GGC at 2582, GGC at 2470, GGC at 2466, GGC at 2442, GGC at 2436, GGC at 2385, GGC at 2347, GGC at 2281, GGC at 2124, GGC at 2065, GGC at 2030, GGC at 1846, GGC at 1741, GGC at 1716, GGC at 1651, GGC at 1631, GGC at 1603, GGC at 1590, GGC at 1419, GGC at 1389, GGC at 1347, GGC at 1287, GGC at 1252, GGC at 1247, GGC at 1219, GGC at 1202, GGC at 1073, GGC at 1028, GGC at 967, GGC at 823, GGC at 787, GGC at 582, GGC at 525, GGC at 486, GGC at 305, GGC at 138.
# RDr1: 0.
# GGCMr1: 85, GGC at 4550, GGC at 4520, GGC at 4477, GGC at 4471, GGC at 4305, GGC at 4296, GGC at 4185, GGC at 4141, GGC at 4135, GGC at 4085, GGC at 4054, GGC at 4046, GGC at 3940, GGC at 3920, GGC at 3914, GGC at 3816, GGC at 3801, GGC at 3736, GGC at 3709, GGC at 3705, GGC at 3674, GGC at 3659, GGC at 3615, GGC at 3574, GGC at 3526, GGC at 3403, GGC at 3234, GGC at 3211, GGC at 3202, GGC at 3154, GGC at 3135, GGC at 3104, GGC at 2922, GGC at 2821, GGC at 2703, GGC at 2649, GGC at 2543, GGC at 2521, GGC at 2515, GGC at 2385, GGC at 2275, GGC at 2191, GGC at 2103, GGC at 2073, GGC at 2056, GGC at 2049, GGC at 2016, GGC at 2001, GGC at 1987, GGC at 1913, GGC at 1901, GGC at 1689, GGC at 1477, GGC at 1464, GGC at 1364, GGC at 1348, GGC at 1324, GGC at 1283, GGC at 1150, GGC at 1113, GGC at 996, GGC at 989, GGC at 950, GGC at 913, GGC at 897, GGC at 848, GGC at 839, GGC at 821, GGC at 728, GGC at 720, GGC at 692, GGC at 682, GGC at 670, GGC at 663, GGC at 625, GGC at 587, GGC at 512, GGC at 504, GGC at 477, GGC at 445, GGC at 268, GGC at 144, GGC at 122, GGC at 76, GGC at 65.
# RDr2: 0.
# GGCMr2: 73, GGC at 4546, GGC at 4538, GGC at 4500, GGC at 4440, GGC at 4430, GGC at 4392, GGC at 4348, GGC at 4345, GGC at 4283, GGC at 4228, GGC at 4206, GGC at 4092, GGC at 3995, GGC at 3973, GGC at 3912, GGC at 3749, GGC at 3698, GGC at 3681, GGC at 3670, GGC at 3648, GGC at 3639, GGC at 3606, GGC at 3593, GGC at 3522, GGC at 3413, GGC at 3295, GGC at 3263, GGC at 3255, GGC at 3203, GGC at 3048, GGC at 3005, GGC at 2816, GGC at 2698, GGC at 2616, GGC at 2498, GGC at 2449, GGC at 2282, GGC at 2275, GGC at 2260, GGC at 2073, GGC at 2034, GGC at 1933, GGC at 1922, GGC at 1908, GGC at 1728, GGC at 1607, GGC at 1303, GGC at 1221, GGC at 1180, GGC at 1000, GGC at 975, GGC at 962, GGC at 870, GGC at 832, GGC at 817, GGC at 798, GGC at 772, GGC at 686, GGC at 625, GGC at 613, GGC at 547, GGC at 542, GGC at 529, GGC at 460, GGC at 429, GGC at 422, GGC at 331, GGC at 327, GGC at 171, GGC at 111, GGC at 74, GGC at 27, GGC at 14.
# RDr3: 0.
# GGCMr3: 81, GGC at 4534, GGC at 4502, GGC at 4393, GGC at 4143, GGC at 4109, GGC at 4030, GGC at 3950, GGC at 3923, GGC at 3856, GGC at 3837, GGC at 3649, GGC at 3635, GGC at 3606, GGC at 3496, GGC at 3413, GGC at 3403, GGC at 3370, GGC at 3328, GGC at 3208, GGC at 3155, GGC at 3144, GGC at 3108, GGC at 3004, GGC at 2991, GGC at 2909, GGC at 2875, GGC at 2866, GGC at 2724, GGC at 2717, GGC at 2694, GGC at 2658, GGC at 2620, GGC at 2575, GGC at 2534, GGC at 2510, GGC at 2390, GGC at 2354, GGC at 2343, GGC at 2310, GGC at 2191, GGC at 2163, GGC at 2051, GGC at 1987, GGC at 1967, GGC at 1954, GGC at 1940, GGC at 1926, GGC at 1922, GGC at 1907, GGC at 1895, GGC at 1879, GGC at 1764, GGC at 1609, GGC at 1590, GGC at 1548, GGC at 1517, GGC at 1494, GGC at 1477, GGC at 1455, GGC at 1442, GGC at 1439, GGC at 1211, GGC at 1183, GGC at 1114, GGC at 902, GGC at 868, GGC at 864, GGC at 852, GGC at 813, GGC at 775, GGC at 667, GGC at 646, GGC at 618, GGC at 520, GGC at 516, GGC at 397, GGC at 380, GGC at 228, GGC at 130, GGC at 83, GGC at 65.
# RDr4: 0.
# GGCMr4: 80, GGC at 4560, GGC at 4494, GGC at 4400, GGC at 4389, GGC at 4340, GGC at 4247, GGC at 4227, GGC at 4204, GGC at 4177, GGC at 4137, GGC at 4109, GGC at 4106, GGC at 4089, GGC at 4077, GGC at 4011, GGC at 3959, GGC at 3843, GGC at 3744, GGC at 3729, GGC at 3580, GGC at 3570, GGC at 3556, GGC at 3547, GGC at 3464, GGC at 3459, GGC at 3265, GGC at 3232, GGC at 3161, GGC at 3100, GGC at 3021, GGC at 2983, GGC at 2925, GGC at 2911, GGC at 2848, GGC at 2804, GGC at 2680, GGC at 2625, GGC at 2614, GGC at 2531, GGC at 2520, GGC at 2384, GGC at 2238, GGC at 2066, GGC at 1991, GGC at 1950, GGC at 1904, GGC at 1881, GGC at 1876, GGC at 1872, GGC at 1625, GGC at 1582, GGC at 1546, GGC at 1482, GGC at 1468, GGC at 1457, GGC at 1389, GGC at 1365, GGC at 1341, GGC at 1154, GGC at 1113, GGC at 1076, GGC at 1025, GGC at 1018, GGC at 959, GGC at 954, GGC at 870, GGC at 810, GGC at 787, GGC at 713, GGC at 709, GGC at 688, GGC at 653, GGC at 637, GGC at 524, GGC at 449, GGC at 351, GGC at 218, GGC at 186, GGC at 155, GGC at 59.
# RDr5: 0.
# GGCMr5: 89, GGC at 4485, GGC at 4449, GGC at 4435, GGC at 4422, GGC at 4385, GGC at 4370, GGC at 4279, GGC at 4262, GGC at 4174, GGC at 3957, GGC at 3952, GGC at 3909, GGC at 3903, GGC at 3882, GGC at 3840, GGC at 3812, GGC at 3787, GGC at 3772, GGC at 3752, GGC at 3743, GGC at 3586, GGC at 3573, GGC at 3556, GGC at 3504, GGC at 3454, GGC at 3179, GGC at 3161, GGC at 3074, GGC at 3062, GGC at 3053, GGC at 3006, GGC at 2932, GGC at 2929, GGC at 2792, GGC at 2755, GGC at 2687, GGC at 2672, GGC at 2615, GGC at 2590, GGC at 2530, GGC at 2392, GGC at 2363, GGC at 2346, GGC at 2166, GGC at 2032, GGC at 1992, GGC at 1987, GGC at 1965, GGC at 1922, GGC at 1832, GGC at 1797, GGC at 1700, GGC at 1597, GGC at 1494, GGC at 1433, GGC at 1424, GGC at 1387, GGC at 1347, GGC at 1232, GGC at 1216, GGC at 1183, GGC at 1131, GGC at 1081, GGC at 1046, GGC at 1028, GGC at 967, GGC at 963, GGC at 869, GGC at 804, GGC at 770, GGC at 742, GGC at 732, GGC at 685, GGC at 678, GGC at 675, GGC at 662, GGC at 640, GGC at 593, GGC at 582, GGC at 578, GGC at 567, GGC at 412, GGC at 355, GGC at 243, GGC at 215, GGC at 185, GGC at 179, GGC at 175, GGC at 68.
# RDr6: 0.
# RDr6: 0.
# RDr7: 0.
# RDr7: 0.
Line 276: Line 276:
# RDr9ci: 0.
# RDr9ci: 0.


===RDr UTRs===
===GGCMr UTRs===
{{main|UTR promoter gene transcriptions}}


===RDr core promoters===
# GGCMr0: GGC at 4536, GGC at 4467, GGC at 4453, GGC at 4334, GGC at 4263, GGC at 4250, GGC at 4239, GGC at 4157, GGC at 4078, GGC at 3997, GGC at 3987, GGC at 3920, GGC at 3900, GGC at 3869, GGC at 3852, GGC at 3739, GGC at 3715, GGC at 3671, GGC at 3642, GGC at 3547, GGC at 3544, GGC at 3487, GGC at 3455, GGC at 3444, GGC at 3424, GGC at 3403, GGC at 3347, GGC at 3290, GGC at 3245, GGC at 3234, GGC at 3222, GGC at 3197, GGC at 3112, GGC at 3088, GGC at 3045, GGC at 3004, GGC at 2994, GGC at 2978, GGC at 2886.
{{main|Core promoter gene transcriptions}}
# GGCMr2: GGC at 4546, GGC at 4538, GGC at 4500, GGC at 4440, GGC at 4430, GGC at 4392, GGC at 4348, GGC at 4345, GGC at 4283, GGC at 4228, GGC at 4206, GGC at 4092, GGC at 3995, GGC at 3973, GGC at 3912, GGC at 3749, GGC at 3698, GGC at 3681, GGC at 3670, GGC at 3648, GGC at 3639, GGC at 3606, GGC at 3593, GGC at 3522, GGC at 3413, GGC at 3295, GGC at 3263, GGC at 3255, GGC at 3203, GGC at 3048, GGC at 3005.
# GGCMr4: GGC at 4560, GGC at 4494, GGC at 4400, GGC at 4389, GGC at 4340, GGC at 4247, GGC at 4227, GGC at 4204, GGC at 4177, GGC at 4137, GGC at 4109, GGC at 4106, GGC at 4089, GGC at 4077, GGC at 4011, GGC at 3959, GGC at 3843, GGC at 3744, GGC at 3729, GGC at 3580, GGC at 3570, GGC at 3556, GGC at 3547, GGC at 3464, GGC at 3459, GGC at 3265, GGC at 3232, GGC at 3161, GGC at 3100, GGC at 3021, GGC at 2983, GGC at 2925, GGC at 2911, GGC at 2848.


===RDr proximal promoters===
===GGCMr core promoters===
{{main|Proximal promoter gene transcriptions}}


===RDr distal promoters===
# GGCMr0: GGC at 2844, GGC at 2838, GGC at 2816.
{{main|Distal promoter gene transcriptions}}
# GGCMr2: GGC at 2816.
 
 
# GGCMr1: GGC at 4550, GGC at 4520, GGC at 4477, GGC at 4471, GGC at 4305, GGC at 4296.
# GGCMr3: GGC at 4534, GGC at 4502, GGC at 4393.
# GGCMr5: GGC at 4485, GGC at 4449, GGC at 4435, GGC at 4422, GGC at 4385, GGC at 4370, GGC at 4279.
 
===GGCMr proximal promoters===
 
# GGCMr0: GGC at 2767, GGC at 2741, GGC at 2708, GGC at 2640.
# GGCMr2: GGC at 2698, GGC at 2616.
# GGCMr4: GGC at 2804, GGC at 2680, GGC at 2625, GGC at 2614.
 
 
# GGCMr1: GGC at 4185, GGC at 4141, GGC at 4135, GGC at 4085, GGC at 4054.
# GGCMr3: GGC at 4143, GGC at 4109.
# GGCMr5: GGC at 4262, GGC at 4174.
 
===GGCMr distal promoters===
 
# GGCMr0: GGC at 2582, GGC at 2470, GGC at 2466, GGC at 2442, GGC at 2436, GGC at 2385, GGC at 2347, GGC at 2281, GGC at 2124, GGC at 2065, GGC at 2030, GGC at 1846, GGC at 1741, GGC at 1716, GGC at 1651, GGC at 1631, GGC at 1603, GGC at 1590, GGC at 1419, GGC at 1389, GGC at 1347, GGC at 1287, GGC at 1252, GGC at 1247, GGC at 1219, GGC at 1202, GGC at 1073, GGC at 1028, GGC at 967, GGC at 823, GGC at 787, GGC at 582, GGC at 525, GGC at 486, GGC at 305, GGC at 138.
# GGCMr2: GGC at 2498, GGC at 2449, GGC at 2282, GGC at 2275, GGC at 2260, GGC at 2073, GGC at 2034, GGC at 1933, GGC at 1922, GGC at 1908, GGC at 1728, GGC at 1607, GGC at 1303, GGC at 1221, GGC at 1180, GGC at 1000, GGC at 975, GGC at 962, GGC at 870, GGC at 832, GGC at 817, GGC at 798, GGC at 772, GGC at 686, GGC at 625, GGC at 613, GGC at 547, GGC at 542, GGC at 529, GGC at 460, GGC at 429, GGC at 422, GGC at 331, GGC at 327, GGC at 171, GGC at 111, GGC at 74, GGC at 27, GGC at 14.
# GGCMr4: GGC at 2531, GGC at 2520, GGC at 2384, GGC at 2238, GGC at 2066, GGC at 1991, GGC at 1950, GGC at 1904, GGC at 1881, GGC at 1876, GGC at 1872, GGC at 1625, GGC at 1582, GGC at 1546, GGC at 1482, GGC at 1468, GGC at 1457, GGC at 1389, GGC at 1365, GGC at 1341, GGC at 1154, GGC at 1113, GGC at 1076, GGC at 1025, GGC at 1018, GGC at 959, GGC at 954, GGC at 870, GGC at 810, GGC at 787, GGC at 713, GGC at 709, GGC at 688, GGC at 653, GGC at 637, GGC at 524, GGC at 449, GGC at 351, GGC at 218, GGC at 186, GGC at 155, GGC at 59.
 
 
# GGCMr1: GGC at 4046, GGC at 3940, GGC at 3920, GGC at 3914, GGC at 3816, GGC at 3801, GGC at 3736, GGC at 3709, GGC at 3705, GGC at 3674, GGC at 3659, GGC at 3615, GGC at 3574, GGC at 3526, GGC at 3403, GGC at 3234, GGC at 3211, GGC at 3202, GGC at 3154, GGC at 3135, GGC at 3104, GGC at 2922, GGC at 2821, GGC at 2703, GGC at 2649, GGC at 2543, GGC at 2521, GGC at 2515, GGC at 2385, GGC at 2275, GGC at 2191, GGC at 2103, GGC at 2073, GGC at 2056, GGC at 2049, GGC at 2016, GGC at 2001, GGC at 1987, GGC at 1913, GGC at 1901, GGC at 1689, GGC at 1477, GGC at 1464, GGC at 1364, GGC at 1348, GGC at 1324, GGC at 1283, GGC at 1150, GGC at 1113, GGC at 996, GGC at 989, GGC at 950, GGC at 913, GGC at 897, GGC at 848, GGC at 839, GGC at 821, GGC at 728, GGC at 720, GGC at 692, GGC at 682, GGC at 670, GGC at 663, GGC at 625, GGC at 587, GGC at 512, GGC at 504, GGC at 477, GGC at 445, GGC at 268, GGC at 144, GGC at 122, GGC at 76, GGC at 65.
# GGCMr3: GGC at 4030, GGC at 3950, GGC at 3923, GGC at 3856, GGC at 3837, GGC at 3649, GGC at 3635, GGC at 3606, GGC at 3496, GGC at 3413, GGC at 3403, GGC at 3370, GGC at 3328, GGC at 3208, GGC at 3155, GGC at 3144, GGC at 3108, GGC at 3004, GGC at 2991, GGC at 2909, GGC at 2875, GGC at 2866, GGC at 2724, GGC at 2717, GGC at 2694, GGC at 2658, GGC at 2620, GGC at 2575, GGC at 2534, GGC at 2510, GGC at 2390, GGC at 2354, GGC at 2343, GGC at 2310, GGC at 2191, GGC at 2163, GGC at 2051, GGC at 1987, GGC at 1967, GGC at 1954, GGC at 1940, GGC at 1926, GGC at 1922, GGC at 1907, GGC at 1895, GGC at 1879, GGC at 1764, GGC at 1609, GGC at 1590, GGC at 1548, GGC at 1517, GGC at 1494, GGC at 1477, GGC at 1455, GGC at 1442, GGC at 1439, GGC at 1211, GGC at 1183, GGC at 1114, GGC at 902, GGC at 868, GGC at 864, GGC at 852, GGC at 813, GGC at 775, GGC at 667, GGC at 646, GGC at 618, GGC at 520, GGC at 516, GGC at 397, GGC at 380, GGC at 228, GGC at 130, GGC at 83, GGC at 65.
# GGCMr5: GGC at 3957, GGC at 3952, GGC at 3909, GGC at 3903, GGC at 3882, GGC at 3840, GGC at 3812, GGC at 3787, GGC at 3772, GGC at 3752, GGC at 3743, GGC at 3586, GGC at 3573, GGC at 3556, GGC at 3504, GGC at 3454, GGC at 3179, GGC at 3161, GGC at 3074, GGC at 3062, GGC at 3053, GGC at 3006, GGC at 2932, GGC at 2929, GGC at 2792, GGC at 2755, GGC at 2687, GGC at 2672, GGC at 2615, GGC at 2590, GGC at 2530, GGC at 2392, GGC at 2363, GGC at 2346, GGC at 2166, GGC at 2032, GGC at 1992, GGC at 1987, GGC at 1965, GGC at 1922, GGC at 1832, GGC at 1797, GGC at 1700, GGC at 1597, GGC at 1494, GGC at 1433, GGC at 1424, GGC at 1387, GGC at 1347, GGC at 1232, GGC at 1216, GGC at 1183, GGC at 1131, GGC at 1081, GGC at 1046, GGC at 1028, GGC at 967, GGC at 963, GGC at 869, GGC at 804, GGC at 770, GGC at 742, GGC at 732, GGC at 685, GGC at 678, GGC at 675, GGC at 662, GGC at 640, GGC at 593, GGC at 582, GGC at 578, GGC at 567, GGC at 412, GGC at 355, GGC at 243, GGC at 215, GGC at 185, GGC at 179, GGC at 175, GGC at 68.


==GGC triplet analysis and results==
==GGC triplet analysis and results==

Revision as of 06:52, 21 April 2022

Associate Editor(s)-in-Chief: Henry A. Hoff

"The transcription factors Uga3, Dal81 and Leu3 belong to the class III family (Zn(II)2Cys6 proteins), and they recognize highly related sequences rich in GGC triplets [15]."[1]

Human genes

Main article: Human genes

Gene expressions

Main article: Gene expressions

Interactions

Main article: Interaction gene transcriptions

Consensus sequences

Main article: Consensus sequence gene transcriptions

"Known consensus string Type of motifs LEU3 CCGNNNNCGG or GGCNNNNGCC Gapped motif".[2]

"MEME analysis identified phylogenetically conserved CCGN4CGG motifs in promoters of several [branched-chain amino acid] BCAA biosynthetic genes"[3]

"The promoters of the BCAA biosynthetic leuA and the iron-regulatory hapX genes contain an evolutionary conserved CCGN4CGG motif."[3]

"LeuB is able to bind to the CCGN4CGG motifs in the promoters of gdhA, hapX and leuA."[3]

Binding site for

Enhancer activity

Main article: Enhancer activity copy gene transcriptions

Promoter occurrences

Main article: Promoter occurrence gene transcriptions

"The regulatory regions of the UGA4 and UGA1 genes contain a UASGABA element (5'- AAAAACCGCCGGCGGCAAT-3') target of Uga3 and Dal81 factors. Within this element there is a consensus site for Leu3 [8, 10, 11, 35]. In contrast, UGA2 has a consensus site for Uga3 (5'-SGCGGNWTT-3') but not a defined UASGABA element or a Leu3 putative site."[1]

Hypotheses

Main article: Hypotheses
  1. A1BG has no regulatory elements in either promoter.
  2. A1BG is not transcribed by a regulatory element.
  3. No regulatory element participates in the transcription of A1BG.

Leu3 samplings

Main article: Model samplings

Copying a responsive elements consensus sequence CCGNNNNCGG and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence CCGNNNNCGG (starting with SuccessablesGGC.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for CCGNNNNCGG, 7, CCGAGTACGG at 4118, CCGTGTACGG at 2669, CCGAGTACGG at 2535, CCGAGTGCGG at 2208, CCGCCCACGG at 1255, CCGTGTGCGG at 964, CCGAGTGCGG at 664.
  2. positive strand, negative direction, looking for CCGNNNNCGG, 2, CCGGGTGCGG at 2197, CCGGGTGCGG at 380.
  3. positive strand, positive direction, looking for CCGNNNNCGG, 6, CCGAAGTCGG at 3998, CCGATATCGG at 3702, CCGCCAACGG at 3492, CCGCACTCGG at 2558, CCGCGTGCGG at 1302, CCGGAAGCGG at 595.
  4. negative strand, positive direction, looking for CCGNNNNCGG, 5, CCGAGTGCGG at 1170, CCGAGTGCGG at 1086, CCGACTGCGG at 1002, CCGAGTGCGG at 582, CCGCAGACGG at 399.

Leu3 UTRs

Main article: UTR promoter gene transcriptions

Negative strand, negative direction: CCGAGTACGG at 4118.

Leu3 proximal promoters

Main article: Proximal promoter gene transcriptions

Negative strand, negative direction: CCGTGTACGG at 2669.

Leu3 distal promoters

Main article: Distal promoter gene transcriptions

Negative strand, negative direction: CCGAGTACGG at 2535, CCGAGTGCGG at 2208, CCGCCCACGG at 1255, CCGTGTGCGG at 964, CCGAGTGCGG at 664.

Positive strand, negative direction: CCGGGTGCGG at 2197, CCGGGTGCGG at 380.

Negative strand, positive direction: CCGAGTGCGG at 1170, CCGAGTGCGG at 1086, CCGACTGCGG at 1002, CCGAGTGCGG at 582, CCGCAGACGG at 399.

Positive strand, positive direction: CCGAAGTCGG at 3998, CCGATATCGG at 3702, CCGCCAACGG at 3492, CCGCACTCGG at 2558, CCGCGTGCGG at 1302, CCGGAAGCGG at 595.

Leu3 random dataset samplings

  1. RDr0: 0.
  2. RDr1: 0.
  3. RDr2: 0.
  4. RDr3: 0.
  5. RDr4: 0.
  6. RDr5: 0.
  7. RDr6: 0.
  8. RDr7: 0.
  9. RDr8: 0.
  10. RDr9: 0.
  11. RDr0ci: 0.
  12. RDr1ci: 0.
  13. RDr2ci: 0.
  14. RDr3ci: 0.
  15. RDr4ci: 0.
  16. RDr5ci: 0.
  17. RDr6ci: 0.
  18. RDr7ci: 0.
  19. RDr8ci: 0.
  20. RDr9ci: 0.

RDr UTRs

Main article: UTR promoter gene transcriptions

RDr core promoters

Main article: Core promoter gene transcriptions

RDr proximal promoters

Main article: Proximal promoter gene transcriptions

RDr distal promoters

Main article: Distal promoter gene transcriptions

Leu3 analysis and results

Main article: Complex locus A1BG and ZNF497 § Leu3

Response element (AAAAAA).<Author reference>

Reals or randoms Promoters direction Numbers Strands Occurrences Averages (± 0.1)
Reals UTR negative 0 2 0 0
Randoms UTR arbitrary negative 0 10 0 0
Randoms UTR alternate negative 0 10 0 0
Reals Core negative 0 2 0 0
Randoms Core negative 0 10 0 0
Reals Core positive 0 2 0 0
Randoms Core positive 0 10 0 0
Reals Proximal negative 0 2 0 0
Randoms Proximal negative 0 10 0 0
Reals Proximal positive 0 2 0 0
Randoms Proximal positive 0 10 0 0
Reals Distal negative 1 2 0.5 0.5
Randoms Distal negative 1 10 0.1 0.05
Reals Distal positive 1 2 0.5 0.5
Randoms Distal positive 0 10 0 0.05

Comparison:

The occurrences of real responsive element consensus sequences are larger than the randoms. This suggests that the real responsive element consensus sequences are likely active or activable.

GGCGGC triplet samplings

  1. Negative strand, negative direction, looking for GGCGGC, 0.
  2. Positive strand, negative direction, looking for GGCGGC, 1, GGCGGC at 1753.
  3. Positive strand, positive direction, looking for GGCGGC, 0.
  4. Negative strand, positive direction, looking for GGCGGC, 3, GGCGGC at 1902, GGCGGC at 1794, GGCGGC at 354.
  1. inverse complement, negative strand, negative direction, looking for GCCGCC, 1, GCCGCC at 2727.
  2. inverse complement, positive strand, negative direction, looking for GCCGCC, 0.
  3. inverse complement, positive strand, positive direction, looking for GCCGCC, 1, GCCGCC at 356.
  4. inverse complement, negative strand, positive direction, looking for GCCGCC, 2, GCCGCC at 1757, GCCGCC at 904.

GGCGGC proximal promoters

Main article: Proximal promoter gene transcriptions

Negative strand, negative direction: GCCGCC at 2727.

GGCGGC distal promoters

Main article: Distal promoter gene transcriptions

Positive strand, negative direction: GGCGGC at 1753.

Negative strand, positive direction: GGCGGC at 1902, GGCGGC at 1794, GCCGCC at 1757, GCCGCC at 904, GGCGGC at 354.

Positive strand, positive direction, looking for GCCGCC, 1, GCCGCC at 356.

GGC samplings

Main article: Model samplings

Copying a responsive elements consensus sequence GGC and putting the sequence in "⌘F" finds 145 + 57 between ZNF497 and A1BG or 17 + 121 between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence GGC (starting with SuccessablesGGCM.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for GGC, 17, GGC at 4323, GGC at 3874, GGC at 2408, GGC at 2353, GGC at 2316, GGC at 2190, GGC at 1982, GGC at 1508, GGC at 1501, GGC at 1329, GGC at 1237, GGC at 1217, GGC at 1154, GGC at 1038, GGC at 751, GGC at 512, GGC at 373.
  2. positive strand, negative direction, looking for GGC, 121, GGC at 4279, GGC at 4273, GGC at 4254, GGC at 4239, GGC at 4190, GGC at 4166, GGC at 4142, GGC at 4111, GGC at 4103, GGC at 4098, GGC at 4039, GGC at 3997, GGC at 3991, GGC at 3960, GGC at 3947, GGC at 3927, GGC at 3896, GGC at 3872, GGC at 3716, GGC at 3629, GGC at 3612, GGC at 3597, GGC at 3586, GGC at 3574, GGC at 3566, GGC at 3475, GGC at 3448, GGC at 3442, GGC at 3397, GGC at 3300, GGC at 3227, GGC at 3221, GGC at 3129, GGC at 3088, GGC at 3082, GGC at 3051, GGC at 3043, GGC at 3038, GGC at 3005, GGC at 2907, GGC at 2772, GGC at 2725, GGC at 2722, GGC at 2693, GGC at 2662, GGC at 2606, GGC at 2565, GGC at 2559, GGC at 2528, GGC at 2520, GGC at 2515, GGC at 2437, GGC at 2390, GGC at 2386, GGC at 2364, GGC at 2358, GGC at 2319, GGC at 2229, GGC at 2223, GGC at 2201, GGC at 2153, GGC at 2106, GGC at 2073, GGC at 2066, GGC at 2011, GGC at 1964, GGC at 1949, GGC at 1938, GGC at 1905, GGC at 1893, GGC at 1842, GGC at 1820, GGC at 1807, GGC at 1797, GGC at 1766, GGC at 1758, GGC at 1753, GGC at 1750, GGC at 1743, GGC at 1557, GGC at 1461, GGC at 1358, GGC at 1311, GGC at 1285, GGC at 1279, GGC at 1248, GGC at 1240, GGC at 1199, GGC at 1121, GGC at 1113, GGC at 1108, GGC at 1020, GGC at 994, GGC at 988, GGC at 957, GGC at 954, GGC at 949, GGC at 901, GGC at 854, GGC at 828, GGC at 822, GGC at 698, GGC at 694, GGC at 688, GGC at 657, GGC at 649, GGC at 644, GGC at 597, GGC at 562, GGC at 552, GGC at 515, GGC at 510, GGC at 461, GGC at 451, GGC at 425, GGC at 415, GGC at 384, GGC at 371, GGC at 263, GGC at 120, GGC at 89.
  3. positive strand, positive direction, looking for GGC, 58, GGC at 4344, GGC at 4289, GGC at 4276, GGC at 4243, GGC at 4236, GGC at 4001, GGC at 3912, GGC at 3810, GGC at 3798, GGC at 3556, GGC at 3324, GGC at 3225, GGC at 3200, GGC at 2562, GGC at 2354, GGC at 2214, GGC at 2149, GGC at 1961, GGC at 1845, GGC at 1758, GGC at 1755, GGC at 1664, GGC at 1647, GGC at 1608, GGC at 1545, GGC at 1486, GGC at 1445, GGC at 1434, GGC at 1386, GGC at 1345, GGC at 1334, GGC at 1293, GGC at 1209, GGC at 1163, GGC at 1098, GGC at 1079, GGC at 1041, GGC at 995, GGC at 950, GGC at 909, GGC at 902, GGC at 895, GGC at 850, GGC at 809, GGC at 789, GGC at 765, GGC at 742, GGC at 735, GGC at 678, GGC at 575, GGC at 562, GGC at 483, GGC at 475, GGC at 441, GGC at 392, GGC at 374, GGC at 307, GGC at 74.
  4. negative strand, positive direction, looking for GGC, 148, GGC at 4437, GGC at 4427, GGC at 4402, GGC at 4303, GGC at 4226, GGC at 4189, GGC at 4179, GGC at 4003, GGC at 3991, GGC at 3982, GGC at 3907, GGC at 3754, GGC at 3695, GGC at 3688, GGC at 3680, GGC at 3675, GGC at 3659, GGC at 3637, GGC at 3585, GGC at 3523, GGC at 3498, GGC at 3485, GGC at 3480, GGC at 3470, GGC at 3406, GGC at 3346, GGC at 3118, GGC at 3035, GGC at 2989, GGC at 2984, GGC at 2912, GGC at 2893, GGC at 2884, GGC at 2877, GGC at 2807, GGC at 2767, GGC at 2694, GGC at 2570, GGC at 2551, GGC at 2503, GGC at 2483, GGC at 2434, GGC at 2367, GGC at 2317, GGC at 2293, GGC at 2186, GGC at 2160, GGC at 2116, GGC at 2068, GGC at 1993, GGC at 1972, GGC at 1944, GGC at 1917, GGC at 1906, GGC at 1902, GGC at 1899, GGC at 1881, GGC at 1856, GGC at 1847, GGC at 1816, GGC at 1794, GGC at 1791, GGC at 1766, GGC at 1753, GGC at 1737, GGC at 1716, GGC at 1699, GGC at 1645, GGC at 1637, GGC at 1582, GGC at 1568, GGC at 1561, GGC at 1547, GGC at 1512, GGC at 1484, GGC at 1477, GGC at 1438, GGC at 1428, GGC at 1423, GGC at 1384, GGC at 1377, GGC at 1338, GGC at 1328, GGC at 1323, GGC at 1295, GGC at 1260, GGC at 1255, GGC at 1225, GGC at 1211, GGC at 1200, GGC at 1189, GGC at 1176, GGC at 1171, GGC at 1148, GGC at 1092, GGC at 1043, GGC at 1034, GGC at 1028, GGC at 1023, GGC at 1008, GGC at 1003, GGC at 980, GGC at 973, GGC at 948, GGC at 924, GGC at 919, GGC at 880, GGC at 873, GGC at 848, GGC at 824, GGC at 819, GGC at 763, GGC at 751, GGC at 721, GGC at 672, GGC at 667, GGC at 637, GGC at 588, GGC at 583, GGC at 553, GGC at 539, GGC at 517, GGC at 504, GGC at 499, GGC at 478, GGC at 444, GGC at 419, GGC at 414, GGC at 404, GGC at 388, GGC at 376, GGC at 370, GGC at 354, GGC at 351, GGC at 332, GGC at 325, GGC at 315, GGC at 282, GGC at 274, GGC at 261, GGC at 247, GGC at 211, GGC at 198, GGC at 158, GGC at 91, GGC at 26, GGC at 19, GGC at 9.
  1. inverse complement, negative strand, negative direction, looking for GCC, 29, GCC at 4324, GCC at 3999, GCC at 3596, GCC at 3090, GCC at 2727, GCC at 2724, GCC at 2524, GCC at 2454, GCC at 2392, GCC at 2354, GCC at 2317, GCC at 2231, GCC at 2197, GCC at 2191, GCC at 1809, GCC at 1762, GCC at 1752, GCC at 1680, GCC at 1250, GCC at 1238, GCC at 956, GCC at 865, GCC at 856, GCC at 700, GCC at 653, GCC at 513, GCC at 427, GCC at 380, GCC at 374.
  2. inverse complement, positive strand, negative direction, looking for GCC, 79, GCC at 4521, GCC at 4490, GCC at 4481, GCC at 4440, GCC at 4412, GCC at 4346, GCC at 4322, GCC at 4297, GCC at 4249, GCC at 4230, GCC at 4167, GCC at 4118, GCC at 4099, GCC at 4034, GCC at 4015, GCC at 3948, GCC at 3928, GCC at 3881, GCC at 3873, GCC at 3852, GCC at 3839, GCC at 3727, GCC at 3683, GCC at 3575, GCC at 3567, GCC at 3561, GCC at 3295, GCC at 3281, GCC at 3270, GCC at 3205, GCC at 3197, GCC at 3130, GCC at 3125, GCC at 2767, GCC at 2753, GCC at 2669, GCC at 2651, GCC at 2607, GCC at 2535, GCC at 2516, GCC at 2432, GCC at 2407, GCC at 2334, GCC at 2315, GCC at 2265, GCC at 2208, GCC at 2074, GCC at 2006, GCC at 1992, GCC at 1981, GCC at 1634, GCC at 1620, GCC at 1608, GCC at 1503, GCC at 1456, GCC at 1328, GCC at 1255, GCC at 1236, GCC at 1200, GCC at 1195, GCC at 1153, GCC at 1062, GCC at 1037, GCC at 964, GCC at 945, GCC at 896, GCC at 871, GCC at 729, GCC at 689, GCC at 664, GCC at 645, GCC at 553, GCC at 511, GCC at 505, GCC at 501, GCC at 456, GCC at 416, GCC at 372, GCC at 36.
  3. inverse complement, positive strand, positive direction, looking for GCC, 76, GCC at 4439, GCC at 4429, GCC at 4345, GCC at 4259, GCC at 4244, GCC at 4002, GCC at 3748, GCC at 3670, GCC at 3605, GCC at 3557, GCC at 3515, GCC at 3487, GCC at 2485, GCC at 1916, GCC at 1901, GCC at 1846, GCC at 1793, GCC at 1764, GCC at 1759, GCC at 1751, GCC at 1714, GCC at 1706, GCC at 1698, GCC at 1690, GCC at 1680, GCC at 1641, GCC at 1636, GCC at 1590, GCC at 1581, GCC at 1559, GCC at 1546, GCC at 1529, GCC at 1437, GCC at 1422, GCC at 1337, GCC at 1322, GCC at 1294, GCC at 1254, GCC at 1223, GCC at 1210, GCC at 1202, GCC at 1170, GCC at 1147, GCC at 1086, GCC at 1042, GCC at 1033, GCC at 1025, GCC at 1002, GCC at 979, GCC at 971, GCC at 910, GCC at 879, GCC at 871, GCC at 810, GCC at 762, GCC at 750, GCC at 743, GCC at 720, GCC at 666, GCC at 636, GCC at 582, GCC at 538, GCC at 498, GCC at 489, GCC at 484, GCC at 476, GCC at 442, GCC at 411, GCC at 406, GCC at 399, GCC at 375, GCC at 356, GCC at 353, GCC at 331, GCC at 324, GCC at 299.
  4. inverse complement, negative strand, positive direction, looking for GCC, 129, GCC at 4403, GCC at 4304, GCC at 4291, GCC at 4280, GCC at 4274, GCC at 4238, GCC at 4232, GCC at 4227, GCC at 4210, GCC at 4190, GCC at 3998, GCC at 3896, GCC at 3809, GCC at 3755, GCC at 3702, GCC at 3681, GCC at 3676, GCC at 3499, GCC at 3492, GCC at 3431, GCC at 3375, GCC at 3359, GCC at 3285, GCC at 3235, GCC at 3224, GCC at 3218, GCC at 3101, GCC at 3036, GCC at 3011, GCC at 2990, GCC at 2985, GCC at 2905, GCC at 2897, GCC at 2888, GCC at 2878, GCC at 2823, GCC at 2571, GCC at 2558, GCC at 2527, GCC at 2521, GCC at 2478, GCC at 2391, GCC at 2353, GCC at 2069, GCC at 2009, GCC at 1857, GCC at 1848, GCC at 1795, GCC at 1769, GCC at 1757, GCC at 1754, GCC at 1738, GCC at 1672, GCC at 1656, GCC at 1646, GCC at 1604, GCC at 1596, GCC at 1569, GCC at 1541, GCC at 1513, GCC at 1498, GCC at 1485, GCC at 1466, GCC at 1454, GCC at 1429, GCC at 1408, GCC at 1398, GCC at 1385, GCC at 1366, GCC at 1354, GCC at 1329, GCC at 1308, GCC at 1302, GCC at 1289, GCC at 1268, GCC at 1261, GCC at 1246, GCC at 1233, GCC at 1172, GCC at 1162, GCC at 1149, GCC at 1078, GCC at 1065, GCC at 1009, GCC at 988, GCC at 981, GCC at 949, GCC at 932, GCC at 925, GCC at 908, GCC at 904, GCC at 901, GCC at 888, GCC at 881, GCC at 849, GCC at 832, GCC at 825, GCC at 808, GCC at 804, GCC at 764, GCC at 740, GCC at 729, GCC at 722, GCC at 673, GCC at 645, GCC at 614, GCC at 595, GCC at 589, GCC at 572, GCC at 561, GCC at 512, GCC at 482, GCC at 474, GCC at 459, GCC at 452, GCC at 432, GCC at 420, GCC at 389, GCC at 371, GCC at 340, GCC at 326, GCC at 283, GCC at 248, GCC at 238, GCC at 212, GCC at 199, GCC at 131, GCC at 92, GCC at 65.

GGC UTRs

Main article: UTR promoter gene transcriptions

Negative strand, negative direction: GCC at 4324, GGC at 4323, GCC at 3999, GGC at 3874, GCC at 3596, GCC at 3090.

Positive strand, negative direction: GCC at 4521, GCC at 4490, GCC at 4481, GCC at 4440, GCC at 4412, GCC at 4346, GCC at 4322, GCC at 4297, GGC at 4279, GGC at 4273, GGC at 4254, GCC at 4249, GGC at 4239, GCC at 4230, GGC at 4190, GCC at 4167, GGC at 4166, GGC at 4142, GCC at 4118, GGC at 4111, GGC at 4103, GCC at 4099, GGC at 4098, GGC at 4039, GCC at 4034, GCC at 4015, GGC at 3997, GGC at 3991, GGC at 3960, GCC at 3948, GGC at 3947, GCC at 3928, GGC at 3927, GGC at 3896, GCC at 3881, GCC at 3873, GGC at 3872, GCC at 3852, GCC at 3839, GCC at 3727, GGC at 3716, GCC at 3683, GGC at 3629, GGC at 3612, GGC at 3597, GGC at 3586, GCC at 3575, GGC at 3574, GCC at 3567, GGC at 3566, GCC at 3561, GGC at 3475, GGC at 3448, GGC at 3442, GGC at 3397, GGC at 3300, GCC at 3295, GCC at 3281, GCC at 3270, GGC at 3227, GGC at 3221, GCC at 3205, GCC at 3197, GCC at 3130, GGC at 3129, GCC at 3125, GGC at 3088, GGC at 3082, GGC at 3051, GGC at 3043, GGC at 3038, GGC at 3005, GGC at 2907.

GGC core promoters

Main article: Core promoter gene transcriptions

Negative strand, positive direction: GGC at 4437, GGC at 4427, GCC at 4403, GGC at 4402, GCC at 4304, GGC at 4303, GCC at 4291, GCC at 4280, GCC at 4274.

Positive strand, positive direction: GCC at 4439, GCC at 4429, GCC at 4345, GGC at 4344, GGC at 4289, GGC at 4276.

GGC proximal promoters

Main article: Proximal promoter gene transcriptions

Negative strand, negative direction: GCC at 2727, GCC at 2724.

Positive strand, negative direction: GGC at 2772, GCC at 2767, GCC at 2753, GGC at 2725, GGC at 2722, GGC at 2693, GCC at 2669, GGC at 2662, GCC at 2651, GCC at 2607, GGC at 2606.

Negative strand, positive direction: GCC at 4238, GCC at 4232, GCC at 4227, GGC at 4226, GCC at 4210, GCC at 4190, GGC at 4189, GGC at 4179.

Positive strand, positive direction: GCC at 4259, GCC at 4244, GGC at 4243, GGC at 4236.

GGC distal promoters

Main article: Distal promoter gene transcriptions

Negative strand, negative direction: GCC at 2727, GCC at 2724, GCC at 2524, GCC at 2454, GGC at 2408, GCC at 2392, GCC at 2354, GGC at 2353, GCC at 2317, GGC at 2316, GCC at 2231, GCC at 2197, GCC at 2191, GGC at 2190, GGC at 1982, GCC at 1809, GCC at 1762, GCC at 1752, GCC at 1680, GGC at 1508, GGC at 1501, GGC at 1329, GCC at 1250, GCC at 1238, GGC at 1237, GGC at 1217, GGC at 1154, GGC at 1038, GCC at 956, GCC at 865, GCC at 856, GCC at 700, GCC at 653, GCC at 513, GGC at 751, GGC at 512, GCC at 427, GCC at 380, GCC at 374, GGC at 373.

Positive strand, negative direction: GGC at 2565, GGC at 2559, GCC at 2535, GGC at 2528, GGC at 2520, GCC at 2516, GGC at 2515, GGC at 2437, GCC at 2432, GCC at 2407, GGC at 2390, GGC at 2386, GGC at 2364, GGC at 2358, GCC at 2334, GGC at 2319, GCC at 2315, GCC at 2265, GGC at 2229, GGC at 2223, GCC at 2208, GGC at 2201, GGC at 2153, GGC at 2106, GCC at 2074, GGC at 2073, GGC at 2066, GGC at 2011, GCC at 2006, GCC at 1992, GCC at 1981, GGC at 1964, GGC at 1949, GGC at 1938, GGC at 1905, GGC at 1893, GGC at 1842, GGC at 1820, GGC at 1807, GGC at 1797, GGC at 1766, GGC at 1758, GGC at 1753, GGC at 1750, GGC at 1743, GCC at 1634, GCC at 1620, GCC at 1608, GGC at 1557, GCC at 1503, GGC at 1461, GCC at 1456, GGC at 1358, GCC at 1328, GGC at 1311, GGC at 1285, GGC at 1279, GCC at 1255, GGC at 1248, GGC at 1240, GCC at 1236, GCC at 1200, GGC at 1199, GCC at 1195, GCC at 1153, GGC at 1121, GGC at 1113, GGC at 1108, GCC at 1062, GCC at 1037, GGC at 1020, GGC at 994, GGC at 988, GCC at 964, GGC at 957, GGC at 954, GGC at 949, GCC at 945, GGC at 901, GCC at 896, GCC at 871, GGC at 854, GGC at 828, GGC at 822, GCC at 729, GGC at 698, GGC at 694, GCC at 689, GGC at 688, GCC at 664, GGC at 657, GGC at 649, GCC at 645, GGC at 644, GGC at 597, GGC at 562, GCC at 553, GGC at 552, GGC at 515, GCC at 511, GGC at 510, GCC at 505, GCC at 501, GGC at 461, GCC at 456, GGC at 451, GGC at 425, GCC at 416, GGC at 415, GGC at 384, GCC at 372, GGC at 371, GGC at 263, GGC at 120, GGC at 89, GCC at 36.

Negative strand, positive direction: GGC at 4003, GCC at 3998, GGC at 3991, GGC at 3982, GGC at 3907, GCC at 3896, GCC at 3809, GCC at 3755, GGC at 3754, GCC at 3702, GGC at 3695, GGC at 3688, GCC at 3681, GGC at 3680, GCC at 3676, GGC at 3675, GGC at 3659, GGC at 3637, GGC at 3585, GGC at 3523, GCC at 3499, GGC at 3498, GCC at 3492, GGC at 3485, GGC at 3480, GGC at 3470, GCC at 3431, GGC at 3406, GCC at 3375, GCC at 3359, GGC at 3346, GCC at 3285, GCC at 3235, GCC at 3224, GCC at 3218, GGC at 3118, GCC at 3101, GCC at 3036, GGC at 3035, GCC at 3011, GCC at 2990, GGC at 2989, GCC at 2985, GGC at 2984, GGC at 2912, GCC at 2905, GCC at 2897, GGC at 2893, GCC at 2888, GGC at 2884, GCC at 2878, GGC at 2877, GCC at 2823, GGC at 2807, GGC at 2767, GGC at 2694, GCC at 2571, GGC at 2570, GCC at 2558, GGC at 2551, GCC at 2527, GCC at 2521, GGC at 2503, GGC at 2483, GCC at 2478, GGC at 2434, GCC at 2391, GGC at 2367, GCC at 2353, GGC at 2317, GGC at 2293, GGC at 2186, GGC at 2160, GGC at 2116, GCC at 2069, GGC at 2068, GCC at 2009, GGC at 1993, GGC at 1972, GGC at 1944, GGC at 1917, GGC at 1906, GGC at 1902, GGC at 1899, GGC at 1881, GCC at 1857, GGC at 1856, GCC at 1848, GGC at 1847, GGC at 1816, GCC at 1795, GGC at 1794, GGC at 1791, GCC at 1769, GGC at 1766, GCC at 1757, GCC at 1754, GGC at 1753, GCC at 1738, GGC at 1737, GGC at 1716, GGC at 1699, GCC at 1672, GCC at 1656, GCC at 1646, GGC at 1645, GGC at 1637, GCC at 1604, GCC at 1596, GGC at 1582, GCC at 1569, GGC at 1568, GGC at 1561, GGC at 1547, GCC at 1541, GCC at 1513, GGC at 1512, GCC at 1498, GCC at 1485, GGC at 1484, GGC at 1477, GCC at 1466, GCC at 1454, GGC at 1438, GCC at 1429, GGC at 1428, GGC at 1423, GCC at 1408, GCC at 1398, GCC at 1385, GGC at 1384, GGC at 1377, GCC at 1366, GCC at 1354, GGC at 1338, GCC at 1329, GGC at 1328, GGC at 1323, GCC at 1308, GCC at 1302, GGC at 1295, GCC at 1289, GCC at 1268, GCC at 1261, GGC at 1260, GGC at 1255, GCC at 1246, GCC at 1233, GGC at 1225, GGC at 1211, GGC at 1200, GGC at 1189, GGC at 1176, GCC at 1172, GGC at 1171, GCC at 1162, GCC at 1149, GGC at 1148, GGC at 1092, GCC at 1078, GCC at 1065, GGC at 1043, GGC at 1034, GGC at 1028, GGC at 1023, GCC at 1009, GGC at 1008, GGC at 1003, GCC at 988, GCC at 981, GGC at 980, GGC at 973, GCC at 949, GGC at 948, GCC at 932, GCC at 925, GGC at 924, GGC at 919, GCC at 908, GCC at 904, GCC at 901, GCC at 888, GCC at 881, GGC at 880, GGC at 873, GCC at 849, GGC at 848, GCC at 832, GCC at 825, GGC at 824, GGC at 819, GCC at 808, GCC at 804, GCC at 764, GGC at 763, GGC at 751, GCC at 740, GCC at 729, GCC at 722, GGC at 721, GCC at 673, GGC at 672, GGC at 667, GCC at 645, GGC at 637, GCC at 614, GCC at 595, GCC at 589, GGC at 588, GGC at 583, GCC at 572, GCC at 561, GGC at 553, GGC at 539, GGC at 517, GCC at 512, GGC at 504, GGC at 499, GCC at 482, GGC at 478, GCC at 474, GCC at 459, GCC at 452, GGC at 444, GCC at 432, GCC at 420, GGC at 419, GGC at 414, GGC at 404, GCC at 389, GGC at 388, GGC at 376, GCC at 371, GGC at 370, GGC at 354, GGC at 351, GCC at 340, GGC at 332, GCC at 326, GGC at 325, GGC at 315, GCC at 283, GGC at 282, GGC at 274, GGC at 261, GCC at 248, GGC at 247, GCC at 238, GCC at 212, GGC at 211, GCC at 199, GGC at 198, GGC at 158, GCC at 131, GCC at 92, GGC at 91, GCC at 65, GGC at 26, GGC at 19, GGC at 9.

Positive strand, positive direction: GCC at 4002, GGC at 4001, GGC at 3912, GGC at 3810, GGC at 3798, GCC at 3748, GCC at 3670, GCC at 3605, GCC at 3557, GGC at 3556, GCC at 3515, GCC at 3487, GGC at 3324, GGC at 3225, GGC at 3200, GGC at 2562, GCC at 2485, GGC at 2354, GGC at 2214, GGC at 2149, GGC at 1961, GCC at 1916, GCC at 1901, GCC at 1846, GGC at 1845, GCC at 1793, GCC at 1764, GCC at 1759, GGC at 1758, GGC at 1755, GCC at 1751, GCC at 1714, GCC at 1706, GCC at 1698, GCC at 1690, GCC at 1680, GGC at 1664, GGC at 1647, GCC at 1641, GCC at 1636, GGC at 1608, GCC at 1590, GCC at 1581, GCC at 1559, GCC at 1546, GGC at 1545, GCC at 1529, GGC at 1486, GGC at 1445, GCC at 1437, GGC at 1434, GCC at 1422, GGC at 1386, GGC at 1345, GCC at 1337, GGC at 1334, GCC at 1322, GCC at 1294, GGC at 1293, GCC at 1254, GCC at 1223, GCC at 1210, GGC at 1209, GCC at 1202, GCC at 1170, GGC at 1163, GCC at 1147, GGC at 1098, GCC at 1086, GGC at 1079, GCC at 1042, GGC at 1041, GCC at 1033, GCC at 1025, GCC at 1002, GGC at 995, GCC at 979, GCC at 971, GGC at 950, GCC at 910, GGC at 909, GGC at 902, GGC at 895, GCC at 879, GCC at 871, GGC at 850, GCC at 810, GGC at 809, GGC at 789, GGC at 765, GCC at 762, GCC at 750, GCC at 743, GGC at 742, GGC at 735, GCC at 720, GGC at 678, GCC at 666, GCC at 636, GCC at 582, GGC at 575, GGC at 562, GCC at 538, GCC at 498, GCC at 489, GCC at 484, GGC at 483, GCC at 476, GGC at 475, GCC at 442, GGC at 441, GCC at 411, GCC at 406, GCC at 399, GGC at 392, GCC at 375, GGC at 374, GCC at 356, GCC at 353, GCC at 331, GCC at 324, GGC at 307, GCC at 299, GGC at 74.

GGC triplet random dataset samplings

  1. GGCMr0: 82, GGC at 4536, GGC at 4467, GGC at 4453, GGC at 4334, GGC at 4263, GGC at 4250, GGC at 4239, GGC at 4157, GGC at 4078, GGC at 3997, GGC at 3987, GGC at 3920, GGC at 3900, GGC at 3869, GGC at 3852, GGC at 3739, GGC at 3715, GGC at 3671, GGC at 3642, GGC at 3547, GGC at 3544, GGC at 3487, GGC at 3455, GGC at 3444, GGC at 3424, GGC at 3403, GGC at 3347, GGC at 3290, GGC at 3245, GGC at 3234, GGC at 3222, GGC at 3197, GGC at 3112, GGC at 3088, GGC at 3045, GGC at 3004, GGC at 2994, GGC at 2978, GGC at 2886, GGC at 2844, GGC at 2838, GGC at 2816, GGC at 2767, GGC at 2741, GGC at 2708, GGC at 2640, GGC at 2582, GGC at 2470, GGC at 2466, GGC at 2442, GGC at 2436, GGC at 2385, GGC at 2347, GGC at 2281, GGC at 2124, GGC at 2065, GGC at 2030, GGC at 1846, GGC at 1741, GGC at 1716, GGC at 1651, GGC at 1631, GGC at 1603, GGC at 1590, GGC at 1419, GGC at 1389, GGC at 1347, GGC at 1287, GGC at 1252, GGC at 1247, GGC at 1219, GGC at 1202, GGC at 1073, GGC at 1028, GGC at 967, GGC at 823, GGC at 787, GGC at 582, GGC at 525, GGC at 486, GGC at 305, GGC at 138.
  2. GGCMr1: 85, GGC at 4550, GGC at 4520, GGC at 4477, GGC at 4471, GGC at 4305, GGC at 4296, GGC at 4185, GGC at 4141, GGC at 4135, GGC at 4085, GGC at 4054, GGC at 4046, GGC at 3940, GGC at 3920, GGC at 3914, GGC at 3816, GGC at 3801, GGC at 3736, GGC at 3709, GGC at 3705, GGC at 3674, GGC at 3659, GGC at 3615, GGC at 3574, GGC at 3526, GGC at 3403, GGC at 3234, GGC at 3211, GGC at 3202, GGC at 3154, GGC at 3135, GGC at 3104, GGC at 2922, GGC at 2821, GGC at 2703, GGC at 2649, GGC at 2543, GGC at 2521, GGC at 2515, GGC at 2385, GGC at 2275, GGC at 2191, GGC at 2103, GGC at 2073, GGC at 2056, GGC at 2049, GGC at 2016, GGC at 2001, GGC at 1987, GGC at 1913, GGC at 1901, GGC at 1689, GGC at 1477, GGC at 1464, GGC at 1364, GGC at 1348, GGC at 1324, GGC at 1283, GGC at 1150, GGC at 1113, GGC at 996, GGC at 989, GGC at 950, GGC at 913, GGC at 897, GGC at 848, GGC at 839, GGC at 821, GGC at 728, GGC at 720, GGC at 692, GGC at 682, GGC at 670, GGC at 663, GGC at 625, GGC at 587, GGC at 512, GGC at 504, GGC at 477, GGC at 445, GGC at 268, GGC at 144, GGC at 122, GGC at 76, GGC at 65.
  3. GGCMr2: 73, GGC at 4546, GGC at 4538, GGC at 4500, GGC at 4440, GGC at 4430, GGC at 4392, GGC at 4348, GGC at 4345, GGC at 4283, GGC at 4228, GGC at 4206, GGC at 4092, GGC at 3995, GGC at 3973, GGC at 3912, GGC at 3749, GGC at 3698, GGC at 3681, GGC at 3670, GGC at 3648, GGC at 3639, GGC at 3606, GGC at 3593, GGC at 3522, GGC at 3413, GGC at 3295, GGC at 3263, GGC at 3255, GGC at 3203, GGC at 3048, GGC at 3005, GGC at 2816, GGC at 2698, GGC at 2616, GGC at 2498, GGC at 2449, GGC at 2282, GGC at 2275, GGC at 2260, GGC at 2073, GGC at 2034, GGC at 1933, GGC at 1922, GGC at 1908, GGC at 1728, GGC at 1607, GGC at 1303, GGC at 1221, GGC at 1180, GGC at 1000, GGC at 975, GGC at 962, GGC at 870, GGC at 832, GGC at 817, GGC at 798, GGC at 772, GGC at 686, GGC at 625, GGC at 613, GGC at 547, GGC at 542, GGC at 529, GGC at 460, GGC at 429, GGC at 422, GGC at 331, GGC at 327, GGC at 171, GGC at 111, GGC at 74, GGC at 27, GGC at 14.
  4. GGCMr3: 81, GGC at 4534, GGC at 4502, GGC at 4393, GGC at 4143, GGC at 4109, GGC at 4030, GGC at 3950, GGC at 3923, GGC at 3856, GGC at 3837, GGC at 3649, GGC at 3635, GGC at 3606, GGC at 3496, GGC at 3413, GGC at 3403, GGC at 3370, GGC at 3328, GGC at 3208, GGC at 3155, GGC at 3144, GGC at 3108, GGC at 3004, GGC at 2991, GGC at 2909, GGC at 2875, GGC at 2866, GGC at 2724, GGC at 2717, GGC at 2694, GGC at 2658, GGC at 2620, GGC at 2575, GGC at 2534, GGC at 2510, GGC at 2390, GGC at 2354, GGC at 2343, GGC at 2310, GGC at 2191, GGC at 2163, GGC at 2051, GGC at 1987, GGC at 1967, GGC at 1954, GGC at 1940, GGC at 1926, GGC at 1922, GGC at 1907, GGC at 1895, GGC at 1879, GGC at 1764, GGC at 1609, GGC at 1590, GGC at 1548, GGC at 1517, GGC at 1494, GGC at 1477, GGC at 1455, GGC at 1442, GGC at 1439, GGC at 1211, GGC at 1183, GGC at 1114, GGC at 902, GGC at 868, GGC at 864, GGC at 852, GGC at 813, GGC at 775, GGC at 667, GGC at 646, GGC at 618, GGC at 520, GGC at 516, GGC at 397, GGC at 380, GGC at 228, GGC at 130, GGC at 83, GGC at 65.
  5. GGCMr4: 80, GGC at 4560, GGC at 4494, GGC at 4400, GGC at 4389, GGC at 4340, GGC at 4247, GGC at 4227, GGC at 4204, GGC at 4177, GGC at 4137, GGC at 4109, GGC at 4106, GGC at 4089, GGC at 4077, GGC at 4011, GGC at 3959, GGC at 3843, GGC at 3744, GGC at 3729, GGC at 3580, GGC at 3570, GGC at 3556, GGC at 3547, GGC at 3464, GGC at 3459, GGC at 3265, GGC at 3232, GGC at 3161, GGC at 3100, GGC at 3021, GGC at 2983, GGC at 2925, GGC at 2911, GGC at 2848, GGC at 2804, GGC at 2680, GGC at 2625, GGC at 2614, GGC at 2531, GGC at 2520, GGC at 2384, GGC at 2238, GGC at 2066, GGC at 1991, GGC at 1950, GGC at 1904, GGC at 1881, GGC at 1876, GGC at 1872, GGC at 1625, GGC at 1582, GGC at 1546, GGC at 1482, GGC at 1468, GGC at 1457, GGC at 1389, GGC at 1365, GGC at 1341, GGC at 1154, GGC at 1113, GGC at 1076, GGC at 1025, GGC at 1018, GGC at 959, GGC at 954, GGC at 870, GGC at 810, GGC at 787, GGC at 713, GGC at 709, GGC at 688, GGC at 653, GGC at 637, GGC at 524, GGC at 449, GGC at 351, GGC at 218, GGC at 186, GGC at 155, GGC at 59.
  6. GGCMr5: 89, GGC at 4485, GGC at 4449, GGC at 4435, GGC at 4422, GGC at 4385, GGC at 4370, GGC at 4279, GGC at 4262, GGC at 4174, GGC at 3957, GGC at 3952, GGC at 3909, GGC at 3903, GGC at 3882, GGC at 3840, GGC at 3812, GGC at 3787, GGC at 3772, GGC at 3752, GGC at 3743, GGC at 3586, GGC at 3573, GGC at 3556, GGC at 3504, GGC at 3454, GGC at 3179, GGC at 3161, GGC at 3074, GGC at 3062, GGC at 3053, GGC at 3006, GGC at 2932, GGC at 2929, GGC at 2792, GGC at 2755, GGC at 2687, GGC at 2672, GGC at 2615, GGC at 2590, GGC at 2530, GGC at 2392, GGC at 2363, GGC at 2346, GGC at 2166, GGC at 2032, GGC at 1992, GGC at 1987, GGC at 1965, GGC at 1922, GGC at 1832, GGC at 1797, GGC at 1700, GGC at 1597, GGC at 1494, GGC at 1433, GGC at 1424, GGC at 1387, GGC at 1347, GGC at 1232, GGC at 1216, GGC at 1183, GGC at 1131, GGC at 1081, GGC at 1046, GGC at 1028, GGC at 967, GGC at 963, GGC at 869, GGC at 804, GGC at 770, GGC at 742, GGC at 732, GGC at 685, GGC at 678, GGC at 675, GGC at 662, GGC at 640, GGC at 593, GGC at 582, GGC at 578, GGC at 567, GGC at 412, GGC at 355, GGC at 243, GGC at 215, GGC at 185, GGC at 179, GGC at 175, GGC at 68.
  7. RDr6: 0.
  8. RDr7: 0.
  9. RDr8: 0.
  10. RDr9: 0.
  11. RDr0ci: 0.
  12. RDr1ci: 0.
  13. RDr2ci: 0.
  14. RDr3ci: 0.
  15. RDr4ci: 0.
  16. RDr5ci: 0.
  17. RDr6ci: 0.
  18. RDr7ci: 0.
  19. RDr8ci: 0.
  20. RDr9ci: 0.

GGCMr UTRs

  1. GGCMr0: GGC at 4536, GGC at 4467, GGC at 4453, GGC at 4334, GGC at 4263, GGC at 4250, GGC at 4239, GGC at 4157, GGC at 4078, GGC at 3997, GGC at 3987, GGC at 3920, GGC at 3900, GGC at 3869, GGC at 3852, GGC at 3739, GGC at 3715, GGC at 3671, GGC at 3642, GGC at 3547, GGC at 3544, GGC at 3487, GGC at 3455, GGC at 3444, GGC at 3424, GGC at 3403, GGC at 3347, GGC at 3290, GGC at 3245, GGC at 3234, GGC at 3222, GGC at 3197, GGC at 3112, GGC at 3088, GGC at 3045, GGC at 3004, GGC at 2994, GGC at 2978, GGC at 2886.
  2. GGCMr2: GGC at 4546, GGC at 4538, GGC at 4500, GGC at 4440, GGC at 4430, GGC at 4392, GGC at 4348, GGC at 4345, GGC at 4283, GGC at 4228, GGC at 4206, GGC at 4092, GGC at 3995, GGC at 3973, GGC at 3912, GGC at 3749, GGC at 3698, GGC at 3681, GGC at 3670, GGC at 3648, GGC at 3639, GGC at 3606, GGC at 3593, GGC at 3522, GGC at 3413, GGC at 3295, GGC at 3263, GGC at 3255, GGC at 3203, GGC at 3048, GGC at 3005.
  3. GGCMr4: GGC at 4560, GGC at 4494, GGC at 4400, GGC at 4389, GGC at 4340, GGC at 4247, GGC at 4227, GGC at 4204, GGC at 4177, GGC at 4137, GGC at 4109, GGC at 4106, GGC at 4089, GGC at 4077, GGC at 4011, GGC at 3959, GGC at 3843, GGC at 3744, GGC at 3729, GGC at 3580, GGC at 3570, GGC at 3556, GGC at 3547, GGC at 3464, GGC at 3459, GGC at 3265, GGC at 3232, GGC at 3161, GGC at 3100, GGC at 3021, GGC at 2983, GGC at 2925, GGC at 2911, GGC at 2848.

GGCMr core promoters

  1. GGCMr0: GGC at 2844, GGC at 2838, GGC at 2816.
  2. GGCMr2: GGC at 2816.


  1. GGCMr1: GGC at 4550, GGC at 4520, GGC at 4477, GGC at 4471, GGC at 4305, GGC at 4296.
  2. GGCMr3: GGC at 4534, GGC at 4502, GGC at 4393.
  3. GGCMr5: GGC at 4485, GGC at 4449, GGC at 4435, GGC at 4422, GGC at 4385, GGC at 4370, GGC at 4279.

GGCMr proximal promoters

  1. GGCMr0: GGC at 2767, GGC at 2741, GGC at 2708, GGC at 2640.
  2. GGCMr2: GGC at 2698, GGC at 2616.
  3. GGCMr4: GGC at 2804, GGC at 2680, GGC at 2625, GGC at 2614.


  1. GGCMr1: GGC at 4185, GGC at 4141, GGC at 4135, GGC at 4085, GGC at 4054.
  2. GGCMr3: GGC at 4143, GGC at 4109.
  3. GGCMr5: GGC at 4262, GGC at 4174.

GGCMr distal promoters

  1. GGCMr0: GGC at 2582, GGC at 2470, GGC at 2466, GGC at 2442, GGC at 2436, GGC at 2385, GGC at 2347, GGC at 2281, GGC at 2124, GGC at 2065, GGC at 2030, GGC at 1846, GGC at 1741, GGC at 1716, GGC at 1651, GGC at 1631, GGC at 1603, GGC at 1590, GGC at 1419, GGC at 1389, GGC at 1347, GGC at 1287, GGC at 1252, GGC at 1247, GGC at 1219, GGC at 1202, GGC at 1073, GGC at 1028, GGC at 967, GGC at 823, GGC at 787, GGC at 582, GGC at 525, GGC at 486, GGC at 305, GGC at 138.
  2. GGCMr2: GGC at 2498, GGC at 2449, GGC at 2282, GGC at 2275, GGC at 2260, GGC at 2073, GGC at 2034, GGC at 1933, GGC at 1922, GGC at 1908, GGC at 1728, GGC at 1607, GGC at 1303, GGC at 1221, GGC at 1180, GGC at 1000, GGC at 975, GGC at 962, GGC at 870, GGC at 832, GGC at 817, GGC at 798, GGC at 772, GGC at 686, GGC at 625, GGC at 613, GGC at 547, GGC at 542, GGC at 529, GGC at 460, GGC at 429, GGC at 422, GGC at 331, GGC at 327, GGC at 171, GGC at 111, GGC at 74, GGC at 27, GGC at 14.
  3. GGCMr4: GGC at 2531, GGC at 2520, GGC at 2384, GGC at 2238, GGC at 2066, GGC at 1991, GGC at 1950, GGC at 1904, GGC at 1881, GGC at 1876, GGC at 1872, GGC at 1625, GGC at 1582, GGC at 1546, GGC at 1482, GGC at 1468, GGC at 1457, GGC at 1389, GGC at 1365, GGC at 1341, GGC at 1154, GGC at 1113, GGC at 1076, GGC at 1025, GGC at 1018, GGC at 959, GGC at 954, GGC at 870, GGC at 810, GGC at 787, GGC at 713, GGC at 709, GGC at 688, GGC at 653, GGC at 637, GGC at 524, GGC at 449, GGC at 351, GGC at 218, GGC at 186, GGC at 155, GGC at 59.


  1. GGCMr1: GGC at 4046, GGC at 3940, GGC at 3920, GGC at 3914, GGC at 3816, GGC at 3801, GGC at 3736, GGC at 3709, GGC at 3705, GGC at 3674, GGC at 3659, GGC at 3615, GGC at 3574, GGC at 3526, GGC at 3403, GGC at 3234, GGC at 3211, GGC at 3202, GGC at 3154, GGC at 3135, GGC at 3104, GGC at 2922, GGC at 2821, GGC at 2703, GGC at 2649, GGC at 2543, GGC at 2521, GGC at 2515, GGC at 2385, GGC at 2275, GGC at 2191, GGC at 2103, GGC at 2073, GGC at 2056, GGC at 2049, GGC at 2016, GGC at 2001, GGC at 1987, GGC at 1913, GGC at 1901, GGC at 1689, GGC at 1477, GGC at 1464, GGC at 1364, GGC at 1348, GGC at 1324, GGC at 1283, GGC at 1150, GGC at 1113, GGC at 996, GGC at 989, GGC at 950, GGC at 913, GGC at 897, GGC at 848, GGC at 839, GGC at 821, GGC at 728, GGC at 720, GGC at 692, GGC at 682, GGC at 670, GGC at 663, GGC at 625, GGC at 587, GGC at 512, GGC at 504, GGC at 477, GGC at 445, GGC at 268, GGC at 144, GGC at 122, GGC at 76, GGC at 65.
  2. GGCMr3: GGC at 4030, GGC at 3950, GGC at 3923, GGC at 3856, GGC at 3837, GGC at 3649, GGC at 3635, GGC at 3606, GGC at 3496, GGC at 3413, GGC at 3403, GGC at 3370, GGC at 3328, GGC at 3208, GGC at 3155, GGC at 3144, GGC at 3108, GGC at 3004, GGC at 2991, GGC at 2909, GGC at 2875, GGC at 2866, GGC at 2724, GGC at 2717, GGC at 2694, GGC at 2658, GGC at 2620, GGC at 2575, GGC at 2534, GGC at 2510, GGC at 2390, GGC at 2354, GGC at 2343, GGC at 2310, GGC at 2191, GGC at 2163, GGC at 2051, GGC at 1987, GGC at 1967, GGC at 1954, GGC at 1940, GGC at 1926, GGC at 1922, GGC at 1907, GGC at 1895, GGC at 1879, GGC at 1764, GGC at 1609, GGC at 1590, GGC at 1548, GGC at 1517, GGC at 1494, GGC at 1477, GGC at 1455, GGC at 1442, GGC at 1439, GGC at 1211, GGC at 1183, GGC at 1114, GGC at 902, GGC at 868, GGC at 864, GGC at 852, GGC at 813, GGC at 775, GGC at 667, GGC at 646, GGC at 618, GGC at 520, GGC at 516, GGC at 397, GGC at 380, GGC at 228, GGC at 130, GGC at 83, GGC at 65.
  3. GGCMr5: GGC at 3957, GGC at 3952, GGC at 3909, GGC at 3903, GGC at 3882, GGC at 3840, GGC at 3812, GGC at 3787, GGC at 3772, GGC at 3752, GGC at 3743, GGC at 3586, GGC at 3573, GGC at 3556, GGC at 3504, GGC at 3454, GGC at 3179, GGC at 3161, GGC at 3074, GGC at 3062, GGC at 3053, GGC at 3006, GGC at 2932, GGC at 2929, GGC at 2792, GGC at 2755, GGC at 2687, GGC at 2672, GGC at 2615, GGC at 2590, GGC at 2530, GGC at 2392, GGC at 2363, GGC at 2346, GGC at 2166, GGC at 2032, GGC at 1992, GGC at 1987, GGC at 1965, GGC at 1922, GGC at 1832, GGC at 1797, GGC at 1700, GGC at 1597, GGC at 1494, GGC at 1433, GGC at 1424, GGC at 1387, GGC at 1347, GGC at 1232, GGC at 1216, GGC at 1183, GGC at 1131, GGC at 1081, GGC at 1046, GGC at 1028, GGC at 967, GGC at 963, GGC at 869, GGC at 804, GGC at 770, GGC at 742, GGC at 732, GGC at 685, GGC at 678, GGC at 675, GGC at 662, GGC at 640, GGC at 593, GGC at 582, GGC at 578, GGC at 567, GGC at 412, GGC at 355, GGC at 243, GGC at 215, GGC at 185, GGC at 179, GGC at 175, GGC at 68.

GGC triplet analysis and results

Main article: Complex locus A1BG and ZNF497 § GGC triplets

Response element (AAAAAA).<Author reference>

Reals or randoms Promoters direction Numbers Strands Occurrences Averages (± 0.1)
Reals UTR negative 0 2 0 0
Randoms UTR arbitrary negative 0 10 0 0
Randoms UTR alternate negative 0 10 0 0
Reals Core negative 0 2 0 0
Randoms Core negative 0 10 0 0
Reals Core positive 0 2 0 0
Randoms Core positive 0 10 0 0
Reals Proximal negative 0 2 0 0
Randoms Proximal negative 0 10 0 0
Reals Proximal positive 0 2 0 0
Randoms Proximal positive 0 10 0 0
Reals Distal negative 1 2 0.5 0.5
Randoms Distal negative 1 10 0.1 0.05
Reals Distal positive 1 2 0.5 0.5
Randoms Distal positive 0 10 0 0.05

Comparison:

The occurrences of real responsive element consensus sequences are larger than the randoms. This suggests that the real responsive element consensus sequences are likely active or activable.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

See also

References

  1. ↑ 1.0 1.1 Marcos Palavecino-Ruiz, Mariana Bermudez-Moretti and Susana Correa-Garcia (12 October 2017). "Unravelling the transcriptional regulation of Saccharomyces cerevisiae UGA genes: the dual role of transcription factor Leu3" (PDF). Microbiology. 163: 1692–1701. doi:10.1099/mic.0.000560. Retrieved 20 April 2021.
  2. ↑ Uyyala Srinivasulu Reddy, Michael Arock, A.V. Reddy (20 April 2020). "Discovering of gapped motifs using particle swarm optimisation". International Journal of Computational Intelligence in Bioinformatics and Systems Biology. 2 (1): 1–21. doi:10.1504/IJCIBSB.2020.106858. Retrieved 20 April 2021.
  3. ↑ 3.0 3.1 3.2 Nanbiao Long, Thomas Orasch, Shizhu Zhang, Lu Gao, Xiaoling Xu, Peter Hortschansky, Jing Ye, Fenli Zhang, Kai Xu, Fabio Gsaller, Maria Straßburger, Ulrike Binder, Thorsten Heinekamp, Axel A. Brakhage, Hubertus Haas, Ling Lu (26 October 2018). "The Zn2Cys6-type transcription factor LeuB cross-links regulation of leucine biosynthesis and iron acquisition in Aspergillus fumigatus". PLOS Genetics. 14 (10): e1007762. doi:10.1371/journal.pgen.1007762. Retrieved 20 April 2021.

External links

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