Copper response element gene transcriptions

Associate Editor(s)-in-Chief: Henry A. Hoff

"Chlamydomonas reinhardtii activates the transcription of the Cyc6 and the Cpx1 genes (encoding cytochrome c₆ and coprogen oxidase) in response to copper deficiency."^[1]

Human genes

Gene expressions

"Mac1p-dependent adaptation to copper deficiency involves the coordinate expression of genes, CTR1, CTR3, FRE1, and FRE7, encoding assimilatory components, through copper-response elements associated with each of these genes (10., 11., 12.)."^[1]

The "Cyc6 gene contains at least two copper-response elements (CuREs) (28)."^[1]

Interactions

Consensus sequences

"A consensus copper-response element [CuRE] TTTGC(T/G)C(A/G) (12) is a binding site for Mac1p."^[1]

Binding site for

Hypotheses

A1BG has no regulatory elements in either promoter.
A1BG is not transcribed by a regulatory element.
No regulatory element participates in the transcription of A1BG.

CuRE (Quinn) samplings

Copying a responsive elements consensus sequence TTTGC(G/T)C(A/G) and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence TTTGC(G/T)C(A/G) (starting with SuccessablesCuRE.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for TTTGC(G/T)C(A/G), 0.
positive strand, negative direction, looking for TTTGC(G/T)C(A/G), 0.
positive strand, positive direction, looking for TTTGC(G/T)C(A/G), 0.
negative strand, positive direction, looking for TTTGC(G/T)C(A/G), 0.
complement, negative strand, negative direction, looking for AAACG(A/C)G(C/T), 0.
complement, positive strand, negative direction, looking for AAACG(A/C)G(C/T), 0.
complement, positive strand, positive direction, looking for AAACG(A/C)G(C/T), 0.
complement, negative strand, positive direction, looking for AAACG(A/C)G(C/T), 0.
inverse complement, negative strand, negative direction, looking for (C/T)G(A/C)GCAAA, 0.
inverse complement, positive strand, negative direction, looking for (C/T)G(A/C)GCAAA, 1, CGCGCAAA at 163.
inverse complement, positive strand, positive direction, looking for (C/T)G(A/C)GCAAA, 0.
inverse complement, negative strand, positive direction, looking for (C/T)G(A/C)GCAAA, 0.
inverse negative strand, negative direction, looking for (A/G)C(G/T)CGTTT, 1, GCGCGTTT at 163.
inverse positive strand, negative direction, looking for (A/G)C(G/T)CGTTT, 0.
inverse positive strand, positive direction, looking for (A/G)C(G/T)CGTTT, 0.
inverse negative strand, positive direction, looking for (A/G)C(G/T)CGTTT, 0.

CuRE distal promoters

Positive strand, negative direction: CGCGCAAA at 163.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

References

↑ ^1.0 ^1.1 ^1.2 ^1.3 Jeanette M. Quinn, Paola Barraco, Mats Eriksson and Sabeeha Merchant (March 2000). "Coordinate Copper- and Oxygen-responsive Cyc6 and Cpx1 Expression in Chlamydomonas Is Mediated by the Same Element". Journal of Biological Chemistry. 275 (9): 6080–6089. doi:10.1074/jbc.275.9.6080. Retrieved 1 April 2021.

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