Servenius sequence gene transcriptions: Difference between revisions

Associate Editor(s)-in-Chief: Henry A. Hoff

The "positive effect of W element may result from cooperative interactions between Z and other downstream elements such as the Servenius sequence, GGACCCT, located from -131 to -125 bp(28,38)."^[1]

Human genes

Consensus sequences

The consensus sequence for the Servenius sequence is5'-GGACCCT-3'.^[1]

Servenius samplings

Copying the apparent consensus sequence for Servenius (GGACCCT) and putting it in "⌘F" finds three located between ZSCAN22 and A1BG and one between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence GGACCCT (starting with SuccessablesSERV.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for GGACCCT, 5, GGACCCT at 4548, GGACCCT at 4496, GGACCCT at 4302, GGACCCT at 1961, GGACCCT at 1017.
positive strand, negative direction, looking for GGACCCT, 0.
positive strand, positive direction, looking for GGACCCT, 2, GGACCCT at 3760, GGACCCT at 288.
negative strand, positive direction, looking for GGACCCT, 1, GGACCCT at 189.
complement, negative strand, negative direction, looking for CCTGGGA, 0.
complement, positive strand, negative direction, looking for CCTGGGA, 5, CCTGGGA at 4548, CCTGGGA at 4496, CCTGGGA at 4302, CCTGGGA at 1961, CCTGGGA at 1017.
complement, positive strand, positive direction, looking for CCTGGGA, 1, CCTGGGA at 189.
complement, negative strand, positive direction, looking for CCTGGGA, 2, CCTGGGA at 3760, CCTGGGA at 288.
inverse complement, negative strand, negative direction, looking for AGGGTCC, 0.
inverse complement, positive strand, negative direction, looking for AGGGTCC, 0.
inverse complement, positive strand, positive direction, looking for AGGGTCC, 0.
inverse complement, negative strand, positive direction, looking for AGGGTCC, 0.
inverse negative strand, negative direction, looking for TCCCAGG, 0.
inverse positive strand, negative direction, looking for TCCCAGG, 0.
inverse positive strand, positive direction, looking for TCCCAGG, 0.
inverse negative strand, positive direction, looking for TCCCAGG, 0.

SERV UTRs

Negative strand, negative direction: GGACCCT at 4548, GGACCCT at 4496, GGACCCT at 4302.

SERV distal promoters

Negative strand, negative direction: GGACCCT at 1961, GGACCCT at 1017.

Negative strand, positive direction: GGACCCT at 189.

Positive strand, positive direction: GGACCCT at 3760, GGACCCT at 288.

References

↑ ^1.0 ^1.1 John P. Cogswell, Patricia V. Basta, and Jenny P.-Y. Ting (October 1990). "X-box-binding proteins positively and negatively regulate transcription of the HLA-DRA gene through interaction with discrete upstream W and V elements" (PDF). Proceedings of the National Academy of Sciences USA. 87 (19): 7703–7707. doi:10.1073/pnas.87.19.7703. PMID 2120707. Retrieved 20 August 2020.

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transcriptions Transcription factor 3 gene transcriptions Transcription factory gene transcriptions Transcription start site gene transcriptions Translational control sequence gene transcriptions U box gene transcriptions Unfolded protein response element gene transcriptions Upstream response element gene transcriptions Upstream stimulatory factor gene transcriptions UTR promoter gene transcriptions V and P box gene transcriptions V box gene transcriptions Vhr1p gene transcriptions Vitamin D response element gene transcriptions W box gene transcriptions X box gene transcriptions Xbp1p gene transcriptions X core promoter element gene transcriptions Xenobiotic response element gene transcriptions Xenobiotic responsive element gene transcriptions Yap1p,2p gene transcriptions Y box gene transcriptions YY1 gene transcriptions Zap1p gene transcriptions Z box gene transcriptions Zinc responsive element gene transcriptions

@@ Line 22: / Line 22: @@
 The consensus sequence for the Servenius sequence is5'-GGACCCT-3'.<ref name=Cogswell/>
-==Samplings==
+==Servenius samplings==
 Copying the apparent consensus sequence for Servenius (GGACCCT) and putting it in "⌘F" finds three located between ZSCAN22 and A1BG and one between ZNF497 and A1BG as can be found by the computer programs.
+For the Basic programs testing consensus sequence GGACCCT (starting with SuccessablesSERV.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
+# negative strand, negative direction, looking for GGACCCT, 5, GGACCCT at 4548, GGACCCT at 4496, GGACCCT at 4302, GGACCCT at 1961, GGACCCT at 1017.
+# positive strand, negative direction, looking for GGACCCT, 0.
+# positive strand, positive direction, looking for GGACCCT, 2, GGACCCT at 3760, GGACCCT at 288.
+# negative strand, positive direction, looking for GGACCCT, 1, GGACCCT at 189.
+# complement, negative strand, negative direction, looking for CCTGGGA, 0.
+# complement, positive strand, negative direction, looking for CCTGGGA, 5, CCTGGGA at 4548, CCTGGGA at 4496, CCTGGGA at 4302, CCTGGGA at 1961, CCTGGGA at 1017.
+# complement, positive strand, positive direction, looking for CCTGGGA, 1, CCTGGGA at 189.
+# complement, negative strand, positive direction, looking for CCTGGGA, 2, CCTGGGA at 3760, CCTGGGA at 288.
+# inverse complement, negative strand, negative direction, looking for AGGGTCC, 0.
+# inverse complement, positive strand, negative direction, looking for AGGGTCC, 0.
+# inverse complement, positive strand, positive direction, looking for AGGGTCC, 0.
+# inverse complement, negative strand, positive direction, looking for AGGGTCC, 0.
+# inverse negative strand, negative direction, looking for TCCCAGG, 0.
+# inverse positive strand, negative direction, looking for TCCCAGG, 0.
+# inverse positive strand, positive direction, looking for TCCCAGG, 0.
+# inverse negative strand, positive direction, looking for TCCCAGG, 0.
+===SERV UTRs===
+{{main|UTR promoter gene transcriptions}}
+Negative strand, negative direction: GGACCCT at 4548, GGACCCT at 4496, GGACCCT at 4302.
+===SERV distal promoters===
+{{main|Distal promoter gene transcriptions}}
+Negative strand, negative direction: GGACCCT at 1961, GGACCCT at 1017.
+Negative strand, positive direction: GGACCCT at 189.
+Positive strand, positive direction: GGACCCT at 3760, GGACCCT at 288.
 ==See also==

Servenius sequence gene transcriptions: Difference between revisions

Revision as of 03:03, 24 February 2021

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