Hac1p gene transcriptions: Difference between revisions

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# negative strand, negative direction, looking for CAGCGTG, 0.
# negative strand, negative direction, looking for CAGCGTG, 0.
# negative strand, positive direction, looking for CAGCGTG, 0.
# negative strand, positive direction, looking for CAGCGTG, 0.
# positive strand, negative direction, looking for CAGCGTG, 0.
# positive strand, negative direction, looking for CAGCGTG, 1, CAGCGTG at 740.
# positive strand, positive direction, looking for CAGCGTG, 0.
# positive strand, positive direction, looking for CAGCGTG, 0.
# complement, negative strand, negative direction, looking for TTTTTTTT, 0.
# complement, negative strand, negative direction, looking for GTCGCAC, 1, GTCGCAC at 740.
# complement, negative strand, positive direction, looking for TTTTTTTT, 0.
# complement, negative strand, positive direction, looking for GTCGCAC, 0.
# complement, positive strand, negative direction, looking for TTTTTTTT, 0.
# complement, positive strand, negative direction, looking for GTCGCAC, 0.
# complement, positive strand, positive direction, looking for TTTTTTTT, 0.
# complement, positive strand, positive direction, looking for GTCGCAC, 0.
# inverse complement, negative strand, negative direction, looking for TTTTTTTT, 0.
# inverse complement, negative strand, negative direction, looking for CACGCTG, 0.
# inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
# inverse complement, negative strand, positive direction, looking for CACGCTG, 1, CACGCTG at 778.
# inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0.
# inverse complement, positive strand, negative direction, looking for CACGCTG, 0.
# inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
# inverse complement, positive strand, positive direction, looking for CACGCTG, 0.
# inverse negative strand, negative direction, looking for AAAAAAAA, 0.
# inverse negative strand, negative direction, looking for GTGCGAC, 0.
# inverse negative strand, positive direction, looking for AAAAAAAA, 0.
# inverse negative strand, positive direction, looking for GTGCGAC, 0.
# inverse positive strand, negative direction, looking for AAAAAAAA, 0.
# inverse positive strand, negative direction, looking for GTGCGAC, 0.
# inverse positive strand, positive direction, looking for AAAAAAAA, 0.
# inverse positive strand, positive direction, looking for GTGCGAC, 1, GTGCGAC at 778.
 
===Hac distal promoters===
{{main|Distal promoter gene transcriptions}}
Positive strand: CAGCGTG at 740, and complement.
 
Negative strand: CACGCTG at 778, and complement.


==See also==
==See also==

Revision as of 02:11, 12 January 2021

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Interactions

Consensus sequences

The upstream activating sequence (UAS) for Hac1p is 5'-CAGCGTG-3'.[1]

Samplings

Copying 5'-CAGCGTG-3' in "⌘F" yields none between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence CAGCGTG (starting with SuccessablesHac.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for CAGCGTG, 0.
  2. negative strand, positive direction, looking for CAGCGTG, 0.
  3. positive strand, negative direction, looking for CAGCGTG, 1, CAGCGTG at 740.
  4. positive strand, positive direction, looking for CAGCGTG, 0.
  5. complement, negative strand, negative direction, looking for GTCGCAC, 1, GTCGCAC at 740.
  6. complement, negative strand, positive direction, looking for GTCGCAC, 0.
  7. complement, positive strand, negative direction, looking for GTCGCAC, 0.
  8. complement, positive strand, positive direction, looking for GTCGCAC, 0.
  9. inverse complement, negative strand, negative direction, looking for CACGCTG, 0.
  10. inverse complement, negative strand, positive direction, looking for CACGCTG, 1, CACGCTG at 778.
  11. inverse complement, positive strand, negative direction, looking for CACGCTG, 0.
  12. inverse complement, positive strand, positive direction, looking for CACGCTG, 0.
  13. inverse negative strand, negative direction, looking for GTGCGAC, 0.
  14. inverse negative strand, positive direction, looking for GTGCGAC, 0.
  15. inverse positive strand, negative direction, looking for GTGCGAC, 0.
  16. inverse positive strand, positive direction, looking for GTGCGAC, 1, GTGCGAC at 778.

Hac distal promoters

Positive strand: CAGCGTG at 740, and complement.

Negative strand: CACGCTG at 778, and complement.

See also

References

  1. Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

External links