A1BG response element positive results: Difference between revisions
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{{main|A1BG regulatory elements and regions}} | {{main|A1BG regulatory elements and regions}} | ||
{| class="wikitable sortable" | {| class="wikitable sortable" | ||
|+ Response elements occurring in promoters | |+ Response elements occurring in promoters for A1BG | ||
|- | |- | ||
! Name of elements !! Consensus sequences !! Core promoters !! Proximal promoters !! Distal promoters | ! Name of elements !! Consensus sequences !! Core promoters !! Proximal promoters !! Distal promoters | ||
|- | |- | ||
| ABA responsive element (ABRE) || ACGTG(G/T)C || Positive strand, positive direction: 5'-ACGTGGC-3' at 4344 and complement || Positive strand, negative direction: 5'-ACGTGGC-3' at 4239 and complement || Negative strand, negative direction: 5'-CTGTGCA-3' at 3429 and complement | | ABA responsive element (ABRE) || ACGTG(G/T)C || Positive strand, positive direction: 5'-ACGTGGC-3' at 4344, and complement || Positive strand, negative direction: 5'-ACGTGGC-3' at 4239, and complement || Negative strand, negative direction: 5'-CTGTGCA-3' at 3429, and complement | ||
Positive strand, positive direction: 5'-GACACGT-3' at 2960, 5'-ACGTGTC-3' at 1823 and complements | Positive strand, positive direction: 5'-GACACGT-3' at 2960, 5'-ACGTGTC-3' at 1823, and complements | ||
|- | |- | ||
| Abf1 regulatory factor || CGTNNNNN(A/G)(C/T)GA(C/T) || - || - || Positive strand, negative direction: 5'-CGTTCTTTATGAT-3' at 352 and complement | | Abf1 regulatory factor || CGTNNNNN(A/G)(C/T)GA(C/T) || - || - || Positive strand, negative direction: 5'-CGTTCTTTATGAT-3' at 352, and complement | ||
Positive strand, positive direction: 5'-CGTCACCGGTGAC-3' at 2073, 5'-CGTTCGGTGTGAC-3' at 346 and complements | Positive strand, positive direction: 5'-CGTCACCGGTGAC-3' at 2073, 5'-CGTTCGGTGTGAC-3' at 346, and complements | ||
|- | |- | ||
| A box || TACGTA || - || Negative strand, negative direction: 5'-TACGTA-3' at 4246 and complement || Positive strand, positive direction: 5'-TACGTA-3' at 3071 and complement | | A box || TACGTA || - || Negative strand, negative direction: 5'-TACGTA-3' at 4246, and complement || Positive strand, positive direction: 5'-TACGTA-3' at 3071, and complement | ||
|- | |- | ||
| Box A || TGACTCT || - || - || Positive strand, negative direction: 5'-TGACTCT-3' at 2788 and complement | | Box A || TGACTCT || - || - || Positive strand, negative direction: 5'-TGACTCT-3' at 2788, and complement | ||
Positive strand, positive direction: 5'-TCTCAGT-3' at 2613 and complement | Positive strand, positive direction: 5'-TCTCAGT-3' at 2613, and complement | ||
|- | |- | ||
| Abscisic acid-responsive element || CACGTG || - || - || Negative strand, positive direction: 5'-CACGTG-3' at 570 and complement | | Abscisic acid-responsive element (Pho4) || CACGTG || - || - || Negative strand, positive direction: 5'-CACGTG-3' at 570, and complement | ||
Positive strand, positive direction: 5'-CACGTG-3' at 3884, 5'-CACGTG-3' at 2961, 5'-CACGTG-3' at 1219, and 5'-CACGTG-3' at 547 and complements | Positive strand, positive direction: 5'-CACGTG-3' at 3884, 5'-CACGTG-3' at 2961, 5'-CACGTG-3' at 1219, and 5'-CACGTG-3' at 547, and complements | ||
|- | |- | ||
| Pho4p || CAC(A/G)T(T/G) || Positive strand, negative direction: 5'-CACATT-3' at 4533 and complement || - || Negative strand, negative direction: 5'-TTACAC-3' at 4091, 5'-AACGTG-3' at 3288, 3'-CACGTT-5' at 2864, 3'-CACATT-5' at 2087, 5'-TTACAC-3' at 2064, 5'-AACGTG-3' at 1718, 3'-CACGTT-5' at 1536, 5'-AACGTG-3' at 1346, 5'-AACGTG-3' at 1338, 3'-CACATG-5' at 797, 3'-CACATT-5' at 612, and 3'-CACATG-5' at 324 and complements | | Pho4p || CAC(A/G)T(T/G) || Positive strand, negative direction: 5'-CACATT-3' at 4533, and complement || - || Negative strand, negative direction: 5'-TTACAC-3' at 4091, 5'-AACGTG-3' at 3288, 3'-CACGTT-5' at 2864, 3'-CACATT-5' at 2087, 5'-TTACAC-3' at 2064, 5'-AACGTG-3' at 1718, 3'-CACGTT-5' at 1536, 5'-AACGTG-3' at 1346, 5'-AACGTG-3' at 1338, 3'-CACATG-5' at 797, 3'-CACATT-5' at 612, and 3'-CACATG-5' at 324, and complements | ||
Positive strand, negative direction: 5'-CACATG-3' at 2667, 5'-CACGTT-3' at 343 and complements | Positive strand, negative direction: 5'-CACATG-3' at 2667, 5'-CACGTT-3' at 343, and complements | ||
Negative strand, positive direction: 5'-CATGTG-3' at 3958, 5'-CACATG-3' at 3956, 5'-CATGTG-3' at 3902, 5'-CACATG-3' at 3742, 5'-CACATG-3' at 3707, 5'-CACATG-3' at 2031, 5'-CACGTG-3' at 570, 5'-AATGTG-3' at 229 and complements | Negative strand, positive direction: 5'-CATGTG-3' at 3958, 5'-CACATG-3' at 3956, 5'-CATGTG-3' at 3902, 5'-CACATG-3' at 3742, 5'-CACATG-3' at 3707, 5'-CACATG-3' at 2031, 5'-CACGTG-3' at 570, 5'-AATGTG-3' at 229, and complements | ||
Positive strand, positive direction: 5'-CACGTG-3' at 3884, 5'-CACGTG-3' at 2961, 5'-CACGTT-3' at 2801, 5'-CACGTT-3' at 2335, 5'-CACGTG-3' at 1219, 5'-CACGTG-3' at 547 and complements | Positive strand, positive direction: 5'-CACGTG-3' at 3884, 5'-CACGTG-3' at 2961, 5'-CACGTT-3' at 2801, 5'-CACGTT-3' at 2335, 5'-CACGTG-3' at 1219, 5'-CACGTG-3' at 547, and complements | ||
|- | |- | ||
| H and ACA box || AGAGGA || Positive strand, negative direction: 5'-AGGACA-3' at 4468 and complements || Negative strand, positive direction: 3'-AGGACA-3' at 4252 and complements || Negative strand, negative direction: 5'-AGGACA-3' at 1911 and complements | | H and ACA box || AGAGGA || Positive strand, negative direction: 5'-AGGACA-3' at 4468, and complements || Negative strand, positive direction: 3'-AGGACA-3' at 4252, and complements || Negative strand, negative direction: 5'-AGGACA-3' at 1911, and complements | ||
Negative strand, positive direction: 5'-ACAGGA-3' at 3572, 3'-AGGACA-3' at 3131, 3'-AGGACA-3' at 2460 and complements | Negative strand, positive direction: 5'-ACAGGA-3' at 3572, 3'-AGGACA-3' at 3131, 3'-AGGACA-3' at 2460, and complements | ||
Positive strand, negative direction: 5'-AGGACA-3' at 3756, 5'-AGGACA-3' at 3389, 5'-ACAGGA-3' at 2690 and complements | Positive strand, negative direction: 5'-AGGACA-3' at 3756, 5'-AGGACA-3' at 3389, 5'-ACAGGA-3' at 2690, and complements | ||
Positive strand, positive direction: 5'-AGGACA-3' at 3622, 5'-ACAGGA-3' at 3620, 5'-AGGACA-3' at 144 and complements | Positive strand, positive direction: 5'-AGGACA-3' at 3622, 5'-ACAGGA-3' at 3620, 5'-AGGACA-3' at 144, and complements | ||
|- | |- | ||
| ACGT-containing element || ACGT || Negative strand, positive direction: 5'-TGCAC-3' at 4342 and complement || Negative strand, negative direction: 5'-ACGTG-3' at 4339 and complement | | ACGT-containing element || ACGT || Negative strand, positive direction: 5'-TGCAC-3' at 4342, and complement || Negative strand, negative direction: 5'-ACGTG-3' at 4339, and complement | ||
Positive strand, negative direction: 5'-ACGTG-3' at 4237 and complement | Positive strand, negative direction: 5'-ACGTG-3' at 4237, and complement | ||
|| Negative strand, negative direction: 5'-CACGT-3' at 3429, 5'-ACGTG-3' at 3288, 5'-CACGT-3' at 2863, 5'-ACGTG-3' at 2760, 5'-ACGTG-3' at 2425, 5'-CACGT-3' at 2081, 5'-ACGTG-3' at 1999, 5'-ACGTG-3' at 1718, 5'-CACGT-3' at 1535, 5'-CACGT-3' at 1470, 5'-ACGTG-3' at 1346, 5'-ACGTG-3' at 1338 and complements | || Negative strand, negative direction: 5'-CACGT-3' at 3429, 5'-ACGTG-3' at 3288, 5'-CACGT-3' at 2863, 5'-ACGTG-3' at 2760, 5'-ACGTG-3' at 2425, 5'-CACGT-3' at 2081, 5'-ACGTG-3' at 1999, 5'-ACGTG-3' at 1718, 5'-CACGT-3' at 1535, 5'-CACGT-3' at 1470, 5'-ACGTG-3' at 1346, 5'-ACGTG-3' at 1338, and complements | ||
Negative strand, positive direction: 5'-CACGT-3' at 3254, 5'-ACGTG-3' at 570, 5'-CACGT-3' at 569, and complements | Negative strand, positive direction: 5'-CACGT-3' at 3254, 5'-ACGTG-3' at 570, 5'-CACGT-3' at 569, and complements | ||
| Line 68: | Line 68: | ||
Positive strand, positive direction: 5'-CACGT-3' at 3960, 5'-ACGTG-3' at 3884, 5'-CACGT-3' at 3883, 5'-CACGT-3' at 3464, 5'-ACGTG-3' at 3342, 5'-ACGTG-3' at 3321, 5'-ACGTG-3' at 2961, 5'-CACGT-3' at 2960, 5'-CACGT-3' at 2800, 5'-CACGT-3' at 2681, 5'-CACGT-3' at 2334, 5'-CACGT-3' at 2326, 5'-CACGT-3' at 2063, 5'-ACGTG-3' at 1821, 5'-CACGT-3' at 1786, 5'-ACGTG-3' at 1471, 5'-ACGTG-3' at 1371, 5'-ACGTG-3' at 1219, 5'-CACGT-3' at 1218, 5'-CACGT-3' at 783, 5'-ACGTG-3' at 547, 5'-CACGT-3' at 546, and complements | Positive strand, positive direction: 5'-CACGT-3' at 3960, 5'-ACGTG-3' at 3884, 5'-CACGT-3' at 3883, 5'-CACGT-3' at 3464, 5'-ACGTG-3' at 3342, 5'-ACGTG-3' at 3321, 5'-ACGTG-3' at 2961, 5'-CACGT-3' at 2960, 5'-CACGT-3' at 2800, 5'-CACGT-3' at 2681, 5'-CACGT-3' at 2334, 5'-CACGT-3' at 2326, 5'-CACGT-3' at 2063, 5'-ACGTG-3' at 1821, 5'-CACGT-3' at 1786, 5'-ACGTG-3' at 1471, 5'-ACGTG-3' at 1371, 5'-ACGTG-3' at 1219, 5'-CACGT-3' at 1218, 5'-CACGT-3' at 783, 5'-ACGTG-3' at 547, 5'-CACGT-3' at 546, and complements | ||
|- | |- | ||
| Activating protein 2 (Murata) || (C/G)CCN(3,4)GG(C/G) || Negative strand, positive direction: 5'-CCCTGGGGC-3' at 4427, 5'-CCCTTGGGG-3' at 4302 and complement || Negative strand, positive direction: 5'-CCCATGGGG-3' at 4224, 5'-CCCCATGGG-3' at 4223, and complements || Negative strand, negative direction: 5'-CCCTGCGGC-3' at 1154 and complement | | Activating protein 2 (Murata) || (C/G)CCN(3,4)GG(C/G) || Negative strand, positive direction: 5'-CCCTGGGGC-3' at 4427, 5'-CCCTTGGGG-3' at 4302, and complement || Negative strand, positive direction: 5'-CCCATGGGG-3' at 4224, 5'-CCCCATGGG-3' at 4223, and complements || Negative strand, negative direction: 5'-CCCTGCGGC-3' at 1154, and complement | ||
Negative strand, positive direction: 5'-GCCCTGGGC-3' at 3498, 5'-GCCAATGGG-3' at 2911, 5'-GCCTCTGGC-3' at 2884, 5'-CCCTTAGGG-3' at 2766, 5'-GCCACCGGC-3' at 1547, 5'-GCCACCGGC-3' at 1295, 5'-GCCAGCGGC-3' at 332, 5'-CCCTCAGGC-3' at 91, and complements | Negative strand, positive direction: 5'-GCCCTGGGC-3' at 3498, 5'-GCCAATGGG-3' at 2911, 5'-GCCTCTGGC-3' at 2884, 5'-CCCTTAGGG-3' at 2766, 5'-GCCACCGGC-3' at 1547, 5'-GCCACCGGC-3' at 1295, 5'-GCCAGCGGC-3' at 332, 5'-CCCTCAGGC-3' at 91, and complements | ||
Positive strand, negative direction: 5'-CCCAAGGGC-3' at 1820 and complement | Positive strand, negative direction: 5'-CCCAAGGGC-3' at 1820, and complement | ||
Positive strand, positive direction: 5'-CCCGTTGGC-3' at 3912, 5'-CCCTGTGGG-3' at 3533, 5'-GCCAACGGG-3' at 3493, 5'-CCCAGAGGC-3' at 1961, 5'-GCCGGTGGG-3' at 1852, 5'-GCCCGCGGG-3' at 1770, 5'-CCCGGCGGC-3' at 1758, 5'-GCCCCCGGC-3' at 1647, 5'-CCCGACGGC-3' at 483, 5'-CCCTCCGGG-3' at 372, and complements | Positive strand, positive direction: 5'-CCCGTTGGC-3' at 3912, 5'-CCCTGTGGG-3' at 3533, 5'-GCCAACGGG-3' at 3493, 5'-CCCAGAGGC-3' at 1961, 5'-GCCGGTGGG-3' at 1852, 5'-GCCCGCGGG-3' at 1770, 5'-CCCGGCGGC-3' at 1758, 5'-GCCCCCGGC-3' at 1647, 5'-CCCGACGGC-3' at 483, 5'-CCCTCCGGG-3' at 372, and complements | ||
|- | |- | ||
| Activating protein 2 (Cohen) || GCCTGGCC || - || - || Negative strand, negative direction: 5'-CCGGTCCG-3' at 4103, 5'-CGGACCGG-3' at 3130, 5'-CCGGTCCG-3' at 2520, 5'-CGGACCGG-3' at 1200, 5'-CCGGTCCG-3' at 649 and complements | | Activating protein 2 (Cohen) || GCCTGGCC || - || - || Negative strand, negative direction: 5'-CCGGTCCG-3' at 4103, 5'-CGGACCGG-3' at 3130, 5'-CCGGTCCG-3' at 2520, 5'-CGGACCGG-3' at 1200, 5'-CCGGTCCG-3' at 649, and complements | ||
Negative strand, positive direction: 5'-GCCTGGCC-3' at 3681, 5'-GCCTGGCC-3' at 2990, 5'-GGCCAGGC-3' at 1176 and complements | Negative strand, positive direction: 5'-GCCTGGCC-3' at 3681, 5'-GCCTGGCC-3' at 2990, 5'-GGCCAGGC-3' at 1176, and complements | ||
|- | |- | ||
| Activating protein 2 (Cohen) || TCCCCCGCCC || - || - || Positive strand, positive direction: 5'-TCCCCCGCCC-3' at 4440 and complement | | Activating protein 2 (Cohen) || TCCCCCGCCC || - || - || Positive strand, positive direction: 5'-TCCCCCGCCC-3' at 4440, and complement | ||
|- | |- | ||
| Activating protein 2 (Yao) || TCTTCCC || - || Positive strand, positive direction: 5'-CCCTTCT-3' at 4264 and complement || Negative strand, negative direction: 5'-TCTTCCC-3' at 1657, 5'-GGGAAGA-3' at 620 and complements | | Activating protein 2 (Yao) || TCTTCCC || - || Positive strand, positive direction: 5'-CCCTTCT-3' at 4264, and complement || Negative strand, negative direction: 5'-TCTTCCC-3' at 1657, 5'-GGGAAGA-3' at 620, and complements | ||
|- | |- | ||
| Activating protein 2 (Yao) || CTCCCA || Negative strand, negative direction: 5'-ACCCTC-3' at 4549, 5'-ACCCTC-3' at 4497 and complements || Negative strand, negative direction: 5'-ACCCTC-3' at 4303, 5'-ACCCTC-3' at 4271, 5'-GAGGGT-3' at 4259, 5'-ACCCTC-3' at 4153 and complements || Negative strand, negative direction: 5'-ACCCTC-3' at 3989, 5'-ACCCTC-3' at 3752, 5'-ACCCTC-3' at 3714, 5'-ACCCTC-3' at 3080, 5'-ACCCTC-3' at 2221, 5'-ACCCTC-3' at 2104, 5'-ACCCTC-3' at 1962, 5'-ACCCTC-3' at 1930, 5'-ACCCTC-3' at 1795, 5'-ACCCTC-3' at 1018, 5'-ACCCTC-3' at 686, 5'-ACCCTC-3' at 550, 5'-ACCCTC-3' at 413, 5'-GAGGGT-3' at 389 and complements. | | Activating protein 2 (Yao) || CTCCCA || Negative strand, negative direction: 5'-ACCCTC-3' at 4549, 5'-ACCCTC-3' at 4497, and complements || Negative strand, negative direction: 5'-ACCCTC-3' at 4303, 5'-ACCCTC-3' at 4271, 5'-GAGGGT-3' at 4259, 5'-ACCCTC-3' at 4153, and complements || Negative strand, negative direction: 5'-ACCCTC-3' at 3989, 5'-ACCCTC-3' at 3752, 5'-ACCCTC-3' at 3714, 5'-ACCCTC-3' at 3080, 5'-ACCCTC-3' at 2221, 5'-ACCCTC-3' at 2104, 5'-ACCCTC-3' at 1962, 5'-ACCCTC-3' at 1930, 5'-ACCCTC-3' at 1795, 5'-ACCCTC-3' at 1018, 5'-ACCCTC-3' at 686, 5'-ACCCTC-3' at 550, 5'-ACCCTC-3' at 413, 5'-GAGGGT-3' at 389, and complements. | ||
Negative strand, positive direction: 5'-CTCCCA-3' at 3333, 5'-CTCCCA-3' at 2532, 5'-CTCCCA-3' at 2396, 5'-CTCCCA-3' at 2383, 5'-TGGGAG-3' at 1782, 5'-CTCCCA-3' at 466 and complements. | Negative strand, positive direction: 5'-CTCCCA-3' at 3333, 5'-CTCCCA-3' at 2532, 5'-CTCCCA-3' at 2396, 5'-CTCCCA-3' at 2383, 5'-TGGGAG-3' at 1782, 5'-CTCCCA-3' at 466, and complements. | ||
Positive strand, positive direction: 5'-CTCCCA-3' at 3880, 5'-CTCCCA-3' at 2797, 5'-CTCCCA-3' at 182 | Positive strand, positive direction: 5'-CTCCCA-3' at 3880, 5'-CTCCCA-3' at 2797, 5'-CTCCCA-3' at 182, and complements | ||
|- | |- | ||
| Activating transcription factor (Burton) || (A/C/G)TT(A/G/T)C(A/G)TCA || - || - || Positive strand, negative direction: 5'-ATTTCATCA-3' at 2888, 5'-TGACGAAAC-3' at 313 and | | Activating transcription factor (Burton) || (A/C/G)TT(A/G/T)C(A/G)TCA || - || - || Positive strand, negative direction: 5'-ATTTCATCA-3' at 2888, 5'-TGACGAAAC-3' at 313, and complements | ||
Negative strand, positive direction: 5'-CTTGCGTCA-3' at 2423, 5'-TGACGTAAG-3' at 2207, 5'-TGATGAAAC-3' at 2147, 5'-CTTTCGTCA-3' at 1184 and complements | Negative strand, positive direction: 5'-CTTGCGTCA-3' at 2423, 5'-TGACGTAAG-3' at 2207, 5'-TGATGAAAC-3' at 2147, 5'-CTTTCGTCA-3' at 1184, and complements | ||
|- | |- | ||
| Activating transcription factor (Kilberg) || (A/G/T)TT(A/G/T)CATCA || - || - || Positive strand, negative direction: 5'-ATTTCATCA-3' at 2888 and complement | | Activating transcription factor (Kilberg) || (A/G/T)TT(A/G/T)CATCA || - || - || Positive strand, negative direction: 5'-ATTTCATCA-3' at 2888, and complement | ||
Negative strand, positive direction: 5'-TGATGAAAC-3' at 2147 and complement | Negative strand, positive direction: 5'-TGATGAAAC-3' at 2147, and complement | ||
|- | |- | ||
| Adr1p || TTGG(A/G)G || Negative strand, positive direction: 5'-TTGGGG-3' at 4302, and complement || - || Negative strand, negative direction: 5'-CCCCAA-3' at 3803, 5'-TTGGAG-3' at 3786, 5'-CTCCAA-3' at 3260, 5'-TTGGGG-3' at 3150, 5'-AACCTC-3' at 3118, 5'-AACCCC-3' at 2923, 5'-TTGGGG-3' at 2623, 5'-CTCCAA-3' at 2397, 5'-TTGGGG-3' at 2286, 5'-TTGGGG-3' at 1859, 5'-CTCCAA-3' at 1318, 5'-TTGGGG-3' at 1216, 5'-CTCCAA-3' at 1027, 5'-CTCCAA-3' at 861, 5'-TTGGGG-3' at 616, and complements. | | Adr1p || TTGG(A/G)G || Negative strand, positive direction: 5'-TTGGGG-3' at 4302, and complement || - || Negative strand, negative direction: 5'-CCCCAA-3' at 3803, 5'-TTGGAG-3' at 3786, 5'-CTCCAA-3' at 3260, 5'-TTGGGG-3' at 3150, 5'-AACCTC-3' at 3118, 5'-AACCCC-3' at 2923, 5'-TTGGGG-3' at 2623, 5'-CTCCAA-3' at 2397, 5'-TTGGGG-3' at 2286, 5'-TTGGGG-3' at 1859, 5'-CTCCAA-3' at 1318, 5'-TTGGGG-3' at 1216, 5'-CTCCAA-3' at 1027, 5'-CTCCAA-3' at 861, 5'-TTGGGG-3' at 616, and complements. | ||
| Line 110: | Line 110: | ||
Positive strand, negative direction: 5'-TGGGTGTG-3' at 3185, 5'-CGGGTGCG-3' at 2196, 5'-CGGGTGCG-3' at 379, and complements | Positive strand, negative direction: 5'-TGGGTGTG-3' at 3185, 5'-CGGGTGCG-3' at 2196, 5'-CGGGTGCG-3' at 379, and complements | ||
Negative strand, positive direction: 5'-TGCACCCG-3' at 3324 and complement | Negative strand, positive direction: 5'-TGCACCCG-3' at 3324, and complement | ||
|- | |- | ||
| AGC box || AGCCGCC || - || - || Negative strand, negative direction: 5'-CCGCCGA-3' at 1754, and complement | |||
|- | |||
| Androgen response element (Kouhpayeh) || GGTACAnnnTGTTCT || - || Negative strand, positive direction: 5'-AGAACA-3' at 4068, and complement || Negative strand, negative direction: 5'-TGTTCT-3' at 3759, 5'-TGTTCT-3' at 3635, 5'-TGTTCT-3' at 3340, 5'-TGTTCT-3' at 3307, 5'-TGTACC-3' at 2614, 5'-TGTACC-3' at 2152, 5'-TGTACC-3' at 1207, 5'-ACATGG-3' at 798, 5'-AGAACA-3' at 281, and complements | |||
Positive strand, negative direction: 5'-AGAACA-3' at 3668, 5'-AGAACA-3' at 287, 5'-TGTTCT-3' at 45, and complement | |||
Negative strand, positive direction: 5'-AGAACA-3' at 3094, 5'-TGTTCT-3' at 108, and complements | |||
Positive strand, positive direction: 5'-GGTACA-3' at 3901, 5'-GGTACA-3' at 3336, 5'-GGTACA-3' at 2474, 5'-TGTACC-3' at 2032, 5'-ACAAGA-3' at 108, and complements | |||
|- | |||
| Androgen response element (Wilson) || AGAACAGCCTGTTCT || - || Negative strand, positive direction: 5'-AGAACA-3' at 4068, and complement || Negative strand, negative direction: 5'-TGTTCT-3' at 3759, 5'-TGTTCT-3' at 3635, 5'-TGTTCT-3' at 3340, 5'-TGTTCT-3' at 3307, 5'-AGAACA-3' at 281, and complements | |||
Positive strand, negative direction: 5'-AGAACA-3' at 3668, 5'-AGAACA-3' at 287, 5'-TGTTCT-3' at 45, and complement | |||
Negative strand, positive direction: 5'-AGAACA-3' at 3094, 5'-TGTTCT-3' at 108, and complements | |||
|- | |||
| Angiotensinogen core promoter element || A/C-T-C/T-G-T-G || Negative strand, positive direction: 5'-CTCGTG-3' at 4376, and complement | |||
Positive strand, negative direction: 5'-CACGAG-3' at 4472, and complement | |||
|| Negative strand, negative direction: 5'-CACGAG-3' at 4403 and complement || Negative strand, negative direction: 5'-CTCGTG-3' at 3914, 5'-CTTGTG-3' at 3669, 5'-ATCGTG-3' at 2096, 5'-ATTGTG-3' at 340, 5'-CACGAT-3' at 336, and complements | |||
Positive strand, negative direction: 5'-CACAAG-3' at 3634, 5'-CACAAT-3' at 3515, 5'-CACGAG-3' at 3232, 5'-CACAAG-3' at 2244, 5'-CACAAT-3' at 1721, 5'-CACGAG-3' at 1182, 5'-CACGAG-3' at 708, 5'-CACGAG-3' at 572, 5'-CACGAG-3' at 435, and complements | |||
Negative strand, positive direction: 5'-ATTGTG-3' at 2679, 5'-CACGAG-3' at 243, and complement | |||
Positive strand, positive direction: 5'-CTCGTG-3' at 3739, 5'-CACGAG-3' at 3152, 5'-CTTGTG-3' at 3095, 5'-CACGAG-3' at 2090, 5'-CTCGTG-3' at 1627, 5'-CTCGTG-3' at 1207, 5'-CTCGTG-3' at 955, 5'-CTCGTG-3' at 855, 5'-CACAAG-3' at 107, and complements | |||
|- | |||
| Antioxidant-electrophile responsive element (Lacher) || GC(A/C/T)(A/G/T)(A/G/T)(C/G/T)T(A/C)A || - || - || Negative strand, negative direction: 5'-TGACTATGC-3' at 3546, 5'-TTAATCGGC-3' at 1237, and complements | |||
Positive strand, negative direction: 5'-TGAGTTGGC-3' at 4098, 5'-TTAAAAGGC-3' at 3442, 5'-GCAGTGTAA-3' at 2087, 5'-TTAGCCAGC-3' at 504, 5'-GCATTTTAA-3' at 192, and complements | |||
Negative strand, positive direction: 5'-TGACCAGGC-3' at 2877, and complement | |||
Positive strand, positive direction: 5'-TGAAAAAGC-3' at 1750, and complement | |||
|- | |||
| ATA box || AATAAA || Negative strand, negative direction: 5'-AAATAA-3' at 4537, and complement || Positive strand, negative direction: 5'-AAATAA-3' at 4221, and complement | |||
Positive strand, positive direction: 5'-AAATAA-3' at 4142, and complement | |||
|| Negative strand, negative direction: 5'-AATAAA-3' at 1726, and complement | |||
Positive strand, negative direction: 5'-AAATAA-3' at 4075, 5'-AATAAA-3' at 4072, 5'-AAATAA-3' at 4071, 5'-AATAAA-3' at 3335, 5'-AAATAA-3' at 3334, 5'-AATAAA-3' at 3014, 5'-AAATAA-3' at 3013, and complements | |||
Negative strand, positive direction: 5'-AATAAA-3' at 3427, and complement | |||
Positive strand, positive direction: 5'-AAATAA-3' at 2347, and complement | |||
|- | |||
| Auxin response factor (Ulmasov) || TGTCTC || Negative strand, negative direction: 5'-TGTCTC-3' at 4519, and complement || Positive strand, negative direction: 5'-CCTGTCTCAA-3' at 4374, and complement || Negative strand, negative direction: 5'-TGTCTC-3' at 3673, 5'-TGTCTC-3' at 2779, 5'-TGTCTC-3' at 2444, 5'-GAGACA-3' at 2029, 5'-TGTCTC-3' at 2018, 5'-GAGACA-3' at 1452, 5'-GAGACA-3' at 1085, 5'-TGTCTC-3' at 1074, 5'-GAGACA-3' at 919, 5'-TGTCTC-3' at 908, and complements | |||
Positive strand, negative direction: 5'-TCTGTCTCAA-3' at 3324, 5'-TGTCTC-3' at 2166, 5'-TCTGTCTCAA-3' at 2034, 5'-TCTGTCTCAA-3' at 1090, 5'-TCTGTCTCAA-3' at 924, and complements | |||
Negative strand, positive direction: 5'-GTTGTCTCTT-3' at 3056, 5'-TGTCTC-3' at 2467, 5'-TGTCTC-3' at 2173, 5'-TGTCTC-3' at 2079, 5'-GAGACA-3' at 712, and complements | |||
Positive strand, positive direction: 5'-TGTCTC-3' at 3180, 5'-TGTCTC-3' at 3134, 5'-TGTCTC-3' at 2653, 5'-GAGACA-3' at 2308, 5'-GAGACA-3' at 98, and complement | |||
|- | |||
| Auxin response factor (Boer) || TGTCGG || - || - || Negative strand, negative direction: 5'-TGTCGG-3' at 3727, and complement | |||
Negative strand, positive direction: 5'-CCGACA-3' at 1964, and complement | |||
Positive strand, positive direction: 5'-TGTCGG-3' at 3896, 5'-CCGACA-3' at 3640, 5'-CCGACA-3' at 3349, 5'-TGTCGG-3' at 3101, 5'-CCGACA-3' at 264, 5'-TGTCGG-3' at 65, and complements | |||
|- | |||
| B-box (Johnson) || TGGGCA || - || Positive strand, negative direction: 5'-TGCCCA-3' at 4251, and complement | |||
Negative strand, positive direction: 5'-TGGGCA-3' at 4180, and complement | |||
|| Positive strand, negative direction: 5'-TGGGCA-3' at 4191, 5'-TGGGCA-3' at 4040, 5'-TGCCCA-3' at 3883, 5'-TGCCCA-3' at 3854, 5'-TGGGCA-3' at 3301, 5'-TGGGCA-3' at 2773, 5'-TGGGCA-3' at 2438, 5'-TGCCCA-3' at 1458, 5'-TGGGCA-3' at 1359, 5'-TGGGCA-3' at 1114, 5'-TGGGCA-3' at 902, 5'-TGGGCA-3' at 462, and complements | |||
Negative strand, positive direction: 5'-TGCCCA-3' at 3377, 5'-TGCCCA-3' at 3237, 5'-TGGGCA-3' at 2894, 5'-TGGGCA-3' at 1945, 5'-TGGGCA-3' at 27, and complements | |||
Positive strand, positive direction: 5'-TGCCCA-3' at 3750, and complement | |||
|- | |||
| box B (Sanchez) || TGTCTCA || - || Positive strand, negative direction: 5'-TGTCTCA-3' at 4373, and complement || Negative strand, negative direction: 5'-TGTCTCA-3' at 2445, 5'-TGAGACA-3' at 2029, 5'-TGAGACA-3' at 1085, 5'-TGTCTCA-3' at 1075, 5'-TGAGACA-3' at 919, and complements | |||
Positive strand, negative direction: 5'-TGTCTCA-3' at 3323, 5'-TGTCTCA-3' at 2033, 5'-TGTCTCA-3' at 1089, 5'-TGTCTCA-3' at 923, and complements | |||
Negative strand, positive direction: 5'-TGTCTCA-3' at 2468, 5'-TGTCTCA-3' at 2174, and complements | |||
Positive strand, positive direction: 5'-TGAGACA-3' at 2308, and complement | |||
|- | |||
| B recognition element || (G/C)(G/C)(G/A)CGCC || - || - || Negative strand, negative direction: 5'-CCACGCC-3' at 2197, 5'-CCGCGCC-3' at 1762, 5'-CCTGCGG-3' at 1153, 5'-CCACGCC-3' at 380, and complements | |||
Positive strand, negative direction: 5'-GGCGTGG-3' at 3047, 5'-GGCGTGG-3' at 1897, 5'-GGCGTGG-3' at 1244, and complements | |||
Negative strand, positive direction: 5'-GGCGCCC-3' at 1770, 5'-GGGCGCC-3' at 1769, 5'-GGACGCC-3' at 1672, 5'-GCACGCC-3' at 1302, and complements | |||
Positive strand, positive direction: 5'-GGCGTGG-3' at 2566, 5'-CCACGCC-3' at 1764, 5'-GGCGCCG-3' at 1438, 5'-GGCGCCG-3' at 1338, 5'-CGACGCC-3' at 1033, 5'-GGCGCGC-3' at 682, 5'-CCACGCC-3' at 489, and complements | |||
|- | |||
| CadC binding domain || TTANNNNT || Negative strand, negative direction: 5'-ATAATTAA-3' at 4541, 5'-AAGTGTAA-3' at 4533, and complements | |||
Positive strand, negative direction: 5'-TTATTAAT-3' at 4540, and complement | |||
|| Negative strand, negative direction: 5'-TTATTAAT-3' at 4227, 5'-ATTATTAA-3' at 4226, 5'-TTATTATT-3' at 4224, 5'-TTTTTATT-3' at 4221, and complements | |||
Negative strand, positive direction: 5'-TTATAATT-3' at 4169, 5'-TATTGATT-3' at 4163, 5'-TTATTGAT-3' at 4162, 5'-TGATTATT-3' at 4159, 5'-TTAATCAT-3' at 4148, 5'-TTATTAAT-3' at 4145, 5'-TCTTGATT-3' at 4133, 5'-TTATCACT-3' at 4126, and complements | |||
Positive strand, positive direction: 5'-TTACTCCT-3' at 4097, and complement | |||
|| Negative strand, negative direction: 5'-TTATCTTT-3' at 4081, 5'-TATTTATT-3' at 4075, 5'-TTATTTAT-3' at 4074, 5'-TTTTTATT-3' at 4071, etc., and complements | |||
|} | |} | ||
Revision as of 22:29, 28 November 2020
Associate Editor(s)-in-Chief: Henry A. Hoff
Def. nucleotide "sequences, usually upstream, which are recognized by specific regulatory transcription factors, thereby causing gene response to various regulatory agents", [that] "may be found in both promoter and enhancer regions"[1] are called response elements.
Hypotheses
- A1BG has all response elements in both promoters.
- A1BG is transcribed by all response elements.
- Each response element participates in the transcription of A1BG.
Response element positive results
| Name of elements | Consensus sequences | Core promoters | Proximal promoters | Distal promoters |
|---|---|---|---|---|
| ABA responsive element (ABRE) | ACGTG(G/T)C | Positive strand, positive direction: 5'-ACGTGGC-3' at 4344, and complement | Positive strand, negative direction: 5'-ACGTGGC-3' at 4239, and complement | Negative strand, negative direction: 5'-CTGTGCA-3' at 3429, and complement
Positive strand, positive direction: 5'-GACACGT-3' at 2960, 5'-ACGTGTC-3' at 1823, and complements |
| Abf1 regulatory factor | CGTNNNNN(A/G)(C/T)GA(C/T) | - | - | Positive strand, negative direction: 5'-CGTTCTTTATGAT-3' at 352, and complement
Positive strand, positive direction: 5'-CGTCACCGGTGAC-3' at 2073, 5'-CGTTCGGTGTGAC-3' at 346, and complements |
| A box | TACGTA | - | Negative strand, negative direction: 5'-TACGTA-3' at 4246, and complement | Positive strand, positive direction: 5'-TACGTA-3' at 3071, and complement |
| Box A | TGACTCT | - | - | Positive strand, negative direction: 5'-TGACTCT-3' at 2788, and complement
Positive strand, positive direction: 5'-TCTCAGT-3' at 2613, and complement |
| Abscisic acid-responsive element (Pho4) | CACGTG | - | - | Negative strand, positive direction: 5'-CACGTG-3' at 570, and complement
Positive strand, positive direction: 5'-CACGTG-3' at 3884, 5'-CACGTG-3' at 2961, 5'-CACGTG-3' at 1219, and 5'-CACGTG-3' at 547, and complements |
| Pho4p | CAC(A/G)T(T/G) | Positive strand, negative direction: 5'-CACATT-3' at 4533, and complement | - | Negative strand, negative direction: 5'-TTACAC-3' at 4091, 5'-AACGTG-3' at 3288, 3'-CACGTT-5' at 2864, 3'-CACATT-5' at 2087, 5'-TTACAC-3' at 2064, 5'-AACGTG-3' at 1718, 3'-CACGTT-5' at 1536, 5'-AACGTG-3' at 1346, 5'-AACGTG-3' at 1338, 3'-CACATG-5' at 797, 3'-CACATT-5' at 612, and 3'-CACATG-5' at 324, and complements
Positive strand, negative direction: 5'-CACATG-3' at 2667, 5'-CACGTT-3' at 343, and complements Negative strand, positive direction: 5'-CATGTG-3' at 3958, 5'-CACATG-3' at 3956, 5'-CATGTG-3' at 3902, 5'-CACATG-3' at 3742, 5'-CACATG-3' at 3707, 5'-CACATG-3' at 2031, 5'-CACGTG-3' at 570, 5'-AATGTG-3' at 229, and complements Positive strand, positive direction: 5'-CACGTG-3' at 3884, 5'-CACGTG-3' at 2961, 5'-CACGTT-3' at 2801, 5'-CACGTT-3' at 2335, 5'-CACGTG-3' at 1219, 5'-CACGTG-3' at 547, and complements |
| H and ACA box | AGAGGA | Positive strand, negative direction: 5'-AGGACA-3' at 4468, and complements | Negative strand, positive direction: 3'-AGGACA-3' at 4252, and complements | Negative strand, negative direction: 5'-AGGACA-3' at 1911, and complements
Negative strand, positive direction: 5'-ACAGGA-3' at 3572, 3'-AGGACA-3' at 3131, 3'-AGGACA-3' at 2460, and complements Positive strand, negative direction: 5'-AGGACA-3' at 3756, 5'-AGGACA-3' at 3389, 5'-ACAGGA-3' at 2690, and complements Positive strand, positive direction: 5'-AGGACA-3' at 3622, 5'-ACAGGA-3' at 3620, 5'-AGGACA-3' at 144, and complements |
| ACGT-containing element | ACGT | Negative strand, positive direction: 5'-TGCAC-3' at 4342, and complement | Negative strand, negative direction: 5'-ACGTG-3' at 4339, and complement
Positive strand, negative direction: 5'-ACGTG-3' at 4237, and complement |
Negative strand, negative direction: 5'-CACGT-3' at 3429, 5'-ACGTG-3' at 3288, 5'-CACGT-3' at 2863, 5'-ACGTG-3' at 2760, 5'-ACGTG-3' at 2425, 5'-CACGT-3' at 2081, 5'-ACGTG-3' at 1999, 5'-ACGTG-3' at 1718, 5'-CACGT-3' at 1535, 5'-CACGT-3' at 1470, 5'-ACGTG-3' at 1346, 5'-ACGTG-3' at 1338, and complements
Negative strand, positive direction: 5'-CACGT-3' at 3254, 5'-ACGTG-3' at 570, 5'-CACGT-3' at 569, and complements Positive strand, negative direction: 5'-CACGT-3' at 1772, 5'-CACGT-3' at 531, 5'-CACGT-3' at 342, and complements Positive strand, positive direction: 5'-CACGT-3' at 3960, 5'-ACGTG-3' at 3884, 5'-CACGT-3' at 3883, 5'-CACGT-3' at 3464, 5'-ACGTG-3' at 3342, 5'-ACGTG-3' at 3321, 5'-ACGTG-3' at 2961, 5'-CACGT-3' at 2960, 5'-CACGT-3' at 2800, 5'-CACGT-3' at 2681, 5'-CACGT-3' at 2334, 5'-CACGT-3' at 2326, 5'-CACGT-3' at 2063, 5'-ACGTG-3' at 1821, 5'-CACGT-3' at 1786, 5'-ACGTG-3' at 1471, 5'-ACGTG-3' at 1371, 5'-ACGTG-3' at 1219, 5'-CACGT-3' at 1218, 5'-CACGT-3' at 783, 5'-ACGTG-3' at 547, 5'-CACGT-3' at 546, and complements |
| Activating protein 2 (Murata) | (C/G)CCN(3,4)GG(C/G) | Negative strand, positive direction: 5'-CCCTGGGGC-3' at 4427, 5'-CCCTTGGGG-3' at 4302, and complement | Negative strand, positive direction: 5'-CCCATGGGG-3' at 4224, 5'-CCCCATGGG-3' at 4223, and complements | Negative strand, negative direction: 5'-CCCTGCGGC-3' at 1154, and complement
Negative strand, positive direction: 5'-GCCCTGGGC-3' at 3498, 5'-GCCAATGGG-3' at 2911, 5'-GCCTCTGGC-3' at 2884, 5'-CCCTTAGGG-3' at 2766, 5'-GCCACCGGC-3' at 1547, 5'-GCCACCGGC-3' at 1295, 5'-GCCAGCGGC-3' at 332, 5'-CCCTCAGGC-3' at 91, and complements Positive strand, negative direction: 5'-CCCAAGGGC-3' at 1820, and complement Positive strand, positive direction: 5'-CCCGTTGGC-3' at 3912, 5'-CCCTGTGGG-3' at 3533, 5'-GCCAACGGG-3' at 3493, 5'-CCCAGAGGC-3' at 1961, 5'-GCCGGTGGG-3' at 1852, 5'-GCCCGCGGG-3' at 1770, 5'-CCCGGCGGC-3' at 1758, 5'-GCCCCCGGC-3' at 1647, 5'-CCCGACGGC-3' at 483, 5'-CCCTCCGGG-3' at 372, and complements |
| Activating protein 2 (Cohen) | GCCTGGCC | - | - | Negative strand, negative direction: 5'-CCGGTCCG-3' at 4103, 5'-CGGACCGG-3' at 3130, 5'-CCGGTCCG-3' at 2520, 5'-CGGACCGG-3' at 1200, 5'-CCGGTCCG-3' at 649, and complements
Negative strand, positive direction: 5'-GCCTGGCC-3' at 3681, 5'-GCCTGGCC-3' at 2990, 5'-GGCCAGGC-3' at 1176, and complements |
| Activating protein 2 (Cohen) | TCCCCCGCCC | - | - | Positive strand, positive direction: 5'-TCCCCCGCCC-3' at 4440, and complement |
| Activating protein 2 (Yao) | TCTTCCC | - | Positive strand, positive direction: 5'-CCCTTCT-3' at 4264, and complement | Negative strand, negative direction: 5'-TCTTCCC-3' at 1657, 5'-GGGAAGA-3' at 620, and complements |
| Activating protein 2 (Yao) | CTCCCA | Negative strand, negative direction: 5'-ACCCTC-3' at 4549, 5'-ACCCTC-3' at 4497, and complements | Negative strand, negative direction: 5'-ACCCTC-3' at 4303, 5'-ACCCTC-3' at 4271, 5'-GAGGGT-3' at 4259, 5'-ACCCTC-3' at 4153, and complements | Negative strand, negative direction: 5'-ACCCTC-3' at 3989, 5'-ACCCTC-3' at 3752, 5'-ACCCTC-3' at 3714, 5'-ACCCTC-3' at 3080, 5'-ACCCTC-3' at 2221, 5'-ACCCTC-3' at 2104, 5'-ACCCTC-3' at 1962, 5'-ACCCTC-3' at 1930, 5'-ACCCTC-3' at 1795, 5'-ACCCTC-3' at 1018, 5'-ACCCTC-3' at 686, 5'-ACCCTC-3' at 550, 5'-ACCCTC-3' at 413, 5'-GAGGGT-3' at 389, and complements.
Negative strand, positive direction: 5'-CTCCCA-3' at 3333, 5'-CTCCCA-3' at 2532, 5'-CTCCCA-3' at 2396, 5'-CTCCCA-3' at 2383, 5'-TGGGAG-3' at 1782, 5'-CTCCCA-3' at 466, and complements. Positive strand, positive direction: 5'-CTCCCA-3' at 3880, 5'-CTCCCA-3' at 2797, 5'-CTCCCA-3' at 182, and complements |
| Activating transcription factor (Burton) | (A/C/G)TT(A/G/T)C(A/G)TCA | - | - | Positive strand, negative direction: 5'-ATTTCATCA-3' at 2888, 5'-TGACGAAAC-3' at 313, and complements
Negative strand, positive direction: 5'-CTTGCGTCA-3' at 2423, 5'-TGACGTAAG-3' at 2207, 5'-TGATGAAAC-3' at 2147, 5'-CTTTCGTCA-3' at 1184, and complements |
| Activating transcription factor (Kilberg) | (A/G/T)TT(A/G/T)CATCA | - | - | Positive strand, negative direction: 5'-ATTTCATCA-3' at 2888, and complement
Negative strand, positive direction: 5'-TGATGAAAC-3' at 2147, and complement |
| Adr1p | TTGG(A/G)G | Negative strand, positive direction: 5'-TTGGGG-3' at 4302, and complement | - | Negative strand, negative direction: 5'-CCCCAA-3' at 3803, 5'-TTGGAG-3' at 3786, 5'-CTCCAA-3' at 3260, 5'-TTGGGG-3' at 3150, 5'-AACCTC-3' at 3118, 5'-AACCCC-3' at 2923, 5'-TTGGGG-3' at 2623, 5'-CTCCAA-3' at 2397, 5'-TTGGGG-3' at 2286, 5'-TTGGGG-3' at 1859, 5'-CTCCAA-3' at 1318, 5'-TTGGGG-3' at 1216, 5'-CTCCAA-3' at 1027, 5'-CTCCAA-3' at 861, 5'-TTGGGG-3' at 616, and complements.
Positive strand, negative direction: 5'-TTGGAG-3' at 3118, 5'-TTGGGG-3' at 2923, and complements Negative strand, positive direction: 5'-TTGGGG-3' at 2285, 5'-CTCCAA-3' at 1278, 5'-CTCCAA-3' at 942, 5'-CTCCAA-3' at 842, 5'-CTCCAA-3' at 606, 5'-CCCCAA-3' at 176, and complements Positive strand, positive direction: 5'-TTGGGG-3' at 3939, 5'-CTCCAA-3' at 1925, 5'-TTGGAG-3' at 1618, 5'-TTGGAG-3' at 610, 5'-CTCCAA-3' at 304, and complements |
| Aft1 | (C/T)(A/G)CACCC(A/G) | - | - | Negative strand, negative direction: 5'-TGGGTGTG-3' at 1804, and complement
Positive strand, negative direction: 5'-TGGGTGTG-3' at 3185, 5'-CGGGTGCG-3' at 2196, 5'-CGGGTGCG-3' at 379, and complements Negative strand, positive direction: 5'-TGCACCCG-3' at 3324, and complement |
| AGC box | AGCCGCC | - | - | Negative strand, negative direction: 5'-CCGCCGA-3' at 1754, and complement |
| Androgen response element (Kouhpayeh) | GGTACAnnnTGTTCT | - | Negative strand, positive direction: 5'-AGAACA-3' at 4068, and complement | Negative strand, negative direction: 5'-TGTTCT-3' at 3759, 5'-TGTTCT-3' at 3635, 5'-TGTTCT-3' at 3340, 5'-TGTTCT-3' at 3307, 5'-TGTACC-3' at 2614, 5'-TGTACC-3' at 2152, 5'-TGTACC-3' at 1207, 5'-ACATGG-3' at 798, 5'-AGAACA-3' at 281, and complements
Positive strand, negative direction: 5'-AGAACA-3' at 3668, 5'-AGAACA-3' at 287, 5'-TGTTCT-3' at 45, and complement Negative strand, positive direction: 5'-AGAACA-3' at 3094, 5'-TGTTCT-3' at 108, and complements Positive strand, positive direction: 5'-GGTACA-3' at 3901, 5'-GGTACA-3' at 3336, 5'-GGTACA-3' at 2474, 5'-TGTACC-3' at 2032, 5'-ACAAGA-3' at 108, and complements |
| Androgen response element (Wilson) | AGAACAGCCTGTTCT | - | Negative strand, positive direction: 5'-AGAACA-3' at 4068, and complement | Negative strand, negative direction: 5'-TGTTCT-3' at 3759, 5'-TGTTCT-3' at 3635, 5'-TGTTCT-3' at 3340, 5'-TGTTCT-3' at 3307, 5'-AGAACA-3' at 281, and complements
Positive strand, negative direction: 5'-AGAACA-3' at 3668, 5'-AGAACA-3' at 287, 5'-TGTTCT-3' at 45, and complement Negative strand, positive direction: 5'-AGAACA-3' at 3094, 5'-TGTTCT-3' at 108, and complements |
| Angiotensinogen core promoter element | A/C-T-C/T-G-T-G | Negative strand, positive direction: 5'-CTCGTG-3' at 4376, and complement
Positive strand, negative direction: 5'-CACGAG-3' at 4472, and complement |
Negative strand, negative direction: 5'-CACGAG-3' at 4403 and complement | Negative strand, negative direction: 5'-CTCGTG-3' at 3914, 5'-CTTGTG-3' at 3669, 5'-ATCGTG-3' at 2096, 5'-ATTGTG-3' at 340, 5'-CACGAT-3' at 336, and complements
Positive strand, negative direction: 5'-CACAAG-3' at 3634, 5'-CACAAT-3' at 3515, 5'-CACGAG-3' at 3232, 5'-CACAAG-3' at 2244, 5'-CACAAT-3' at 1721, 5'-CACGAG-3' at 1182, 5'-CACGAG-3' at 708, 5'-CACGAG-3' at 572, 5'-CACGAG-3' at 435, and complements Negative strand, positive direction: 5'-ATTGTG-3' at 2679, 5'-CACGAG-3' at 243, and complement Positive strand, positive direction: 5'-CTCGTG-3' at 3739, 5'-CACGAG-3' at 3152, 5'-CTTGTG-3' at 3095, 5'-CACGAG-3' at 2090, 5'-CTCGTG-3' at 1627, 5'-CTCGTG-3' at 1207, 5'-CTCGTG-3' at 955, 5'-CTCGTG-3' at 855, 5'-CACAAG-3' at 107, and complements |
| Antioxidant-electrophile responsive element (Lacher) | GC(A/C/T)(A/G/T)(A/G/T)(C/G/T)T(A/C)A | - | - | Negative strand, negative direction: 5'-TGACTATGC-3' at 3546, 5'-TTAATCGGC-3' at 1237, and complements
Positive strand, negative direction: 5'-TGAGTTGGC-3' at 4098, 5'-TTAAAAGGC-3' at 3442, 5'-GCAGTGTAA-3' at 2087, 5'-TTAGCCAGC-3' at 504, 5'-GCATTTTAA-3' at 192, and complements Negative strand, positive direction: 5'-TGACCAGGC-3' at 2877, and complement Positive strand, positive direction: 5'-TGAAAAAGC-3' at 1750, and complement |
| ATA box | AATAAA | Negative strand, negative direction: 5'-AAATAA-3' at 4537, and complement | Positive strand, negative direction: 5'-AAATAA-3' at 4221, and complement
Positive strand, positive direction: 5'-AAATAA-3' at 4142, and complement |
Negative strand, negative direction: 5'-AATAAA-3' at 1726, and complement
Positive strand, negative direction: 5'-AAATAA-3' at 4075, 5'-AATAAA-3' at 4072, 5'-AAATAA-3' at 4071, 5'-AATAAA-3' at 3335, 5'-AAATAA-3' at 3334, 5'-AATAAA-3' at 3014, 5'-AAATAA-3' at 3013, and complements Negative strand, positive direction: 5'-AATAAA-3' at 3427, and complement Positive strand, positive direction: 5'-AAATAA-3' at 2347, and complement |
| Auxin response factor (Ulmasov) | TGTCTC | Negative strand, negative direction: 5'-TGTCTC-3' at 4519, and complement | Positive strand, negative direction: 5'-CCTGTCTCAA-3' at 4374, and complement | Negative strand, negative direction: 5'-TGTCTC-3' at 3673, 5'-TGTCTC-3' at 2779, 5'-TGTCTC-3' at 2444, 5'-GAGACA-3' at 2029, 5'-TGTCTC-3' at 2018, 5'-GAGACA-3' at 1452, 5'-GAGACA-3' at 1085, 5'-TGTCTC-3' at 1074, 5'-GAGACA-3' at 919, 5'-TGTCTC-3' at 908, and complements
Positive strand, negative direction: 5'-TCTGTCTCAA-3' at 3324, 5'-TGTCTC-3' at 2166, 5'-TCTGTCTCAA-3' at 2034, 5'-TCTGTCTCAA-3' at 1090, 5'-TCTGTCTCAA-3' at 924, and complements Negative strand, positive direction: 5'-GTTGTCTCTT-3' at 3056, 5'-TGTCTC-3' at 2467, 5'-TGTCTC-3' at 2173, 5'-TGTCTC-3' at 2079, 5'-GAGACA-3' at 712, and complements Positive strand, positive direction: 5'-TGTCTC-3' at 3180, 5'-TGTCTC-3' at 3134, 5'-TGTCTC-3' at 2653, 5'-GAGACA-3' at 2308, 5'-GAGACA-3' at 98, and complement |
| Auxin response factor (Boer) | TGTCGG | - | - | Negative strand, negative direction: 5'-TGTCGG-3' at 3727, and complement
Negative strand, positive direction: 5'-CCGACA-3' at 1964, and complement Positive strand, positive direction: 5'-TGTCGG-3' at 3896, 5'-CCGACA-3' at 3640, 5'-CCGACA-3' at 3349, 5'-TGTCGG-3' at 3101, 5'-CCGACA-3' at 264, 5'-TGTCGG-3' at 65, and complements |
| B-box (Johnson) | TGGGCA | - | Positive strand, negative direction: 5'-TGCCCA-3' at 4251, and complement
Negative strand, positive direction: 5'-TGGGCA-3' at 4180, and complement |
Positive strand, negative direction: 5'-TGGGCA-3' at 4191, 5'-TGGGCA-3' at 4040, 5'-TGCCCA-3' at 3883, 5'-TGCCCA-3' at 3854, 5'-TGGGCA-3' at 3301, 5'-TGGGCA-3' at 2773, 5'-TGGGCA-3' at 2438, 5'-TGCCCA-3' at 1458, 5'-TGGGCA-3' at 1359, 5'-TGGGCA-3' at 1114, 5'-TGGGCA-3' at 902, 5'-TGGGCA-3' at 462, and complements
Negative strand, positive direction: 5'-TGCCCA-3' at 3377, 5'-TGCCCA-3' at 3237, 5'-TGGGCA-3' at 2894, 5'-TGGGCA-3' at 1945, 5'-TGGGCA-3' at 27, and complements Positive strand, positive direction: 5'-TGCCCA-3' at 3750, and complement |
| box B (Sanchez) | TGTCTCA | - | Positive strand, negative direction: 5'-TGTCTCA-3' at 4373, and complement | Negative strand, negative direction: 5'-TGTCTCA-3' at 2445, 5'-TGAGACA-3' at 2029, 5'-TGAGACA-3' at 1085, 5'-TGTCTCA-3' at 1075, 5'-TGAGACA-3' at 919, and complements
Positive strand, negative direction: 5'-TGTCTCA-3' at 3323, 5'-TGTCTCA-3' at 2033, 5'-TGTCTCA-3' at 1089, 5'-TGTCTCA-3' at 923, and complements Negative strand, positive direction: 5'-TGTCTCA-3' at 2468, 5'-TGTCTCA-3' at 2174, and complements Positive strand, positive direction: 5'-TGAGACA-3' at 2308, and complement |
| B recognition element | (G/C)(G/C)(G/A)CGCC | - | - | Negative strand, negative direction: 5'-CCACGCC-3' at 2197, 5'-CCGCGCC-3' at 1762, 5'-CCTGCGG-3' at 1153, 5'-CCACGCC-3' at 380, and complements
Positive strand, negative direction: 5'-GGCGTGG-3' at 3047, 5'-GGCGTGG-3' at 1897, 5'-GGCGTGG-3' at 1244, and complements Negative strand, positive direction: 5'-GGCGCCC-3' at 1770, 5'-GGGCGCC-3' at 1769, 5'-GGACGCC-3' at 1672, 5'-GCACGCC-3' at 1302, and complements Positive strand, positive direction: 5'-GGCGTGG-3' at 2566, 5'-CCACGCC-3' at 1764, 5'-GGCGCCG-3' at 1438, 5'-GGCGCCG-3' at 1338, 5'-CGACGCC-3' at 1033, 5'-GGCGCGC-3' at 682, 5'-CCACGCC-3' at 489, and complements |
| CadC binding domain | TTANNNNT | Negative strand, negative direction: 5'-ATAATTAA-3' at 4541, 5'-AAGTGTAA-3' at 4533, and complements
Positive strand, negative direction: 5'-TTATTAAT-3' at 4540, and complement |
Negative strand, negative direction: 5'-TTATTAAT-3' at 4227, 5'-ATTATTAA-3' at 4226, 5'-TTATTATT-3' at 4224, 5'-TTTTTATT-3' at 4221, and complements
Negative strand, positive direction: 5'-TTATAATT-3' at 4169, 5'-TATTGATT-3' at 4163, 5'-TTATTGAT-3' at 4162, 5'-TGATTATT-3' at 4159, 5'-TTAATCAT-3' at 4148, 5'-TTATTAAT-3' at 4145, 5'-TCTTGATT-3' at 4133, 5'-TTATCACT-3' at 4126, and complements Positive strand, positive direction: 5'-TTACTCCT-3' at 4097, and complement |
Negative strand, negative direction: 5'-TTATCTTT-3' at 4081, 5'-TATTTATT-3' at 4075, 5'-TTATTTAT-3' at 4074, 5'-TTTTTATT-3' at 4071, etc., and complements |
Acknowledgements
The content on this page was first contributed by: Henry A. Hoff.
See also
References
- ↑ MeSH (8 July 2008). "Response Elements". U.S. National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894: National Institutes of Health, Health & Human Services. Retrieved 2 September 2020.