A1BG response element positive results: Difference between revisions
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Positive strand, positive direction: 5'-GACACGT-3' at 2960, 5'-ACGTGTC-3' at 1823 and complements | Positive strand, positive direction: 5'-GACACGT-3' at 2960, 5'-ACGTGTC-3' at 1823 and complements | ||
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| Abf1 regulatory factor || | | Abf1 regulatory factor || CGTNNNNN(A/G)(C/T)GA(C/T) || - || - || Positive strand, negative direction: 5'-CGTTCTTTATGAT-3' at 352 and complement | ||
Positive strand, positive direction: 5'-CGTCACCGGTGAC-3' at 2073, 5'-CGTTCGGTGTGAC-3' at 346 and complements | Positive strand, positive direction: 5'-CGTCACCGGTGAC-3' at 2073, 5'-CGTTCGGTGTGAC-3' at 346 and complements | ||
|- | |||
| A box || TACGTA || - || Negative strand, negative direction: 5'-TACGTA-3' at 4246 and complement || Positive strand, positive direction: 5'-TACGTA-3' at 3071 and complement | |||
|- | |||
| Box A || TGACTCT || - || - || Positive strand, negative direction: 5'-TGACTCT-3' at 2788 and complement | |||
Positive strand, positive direction: 5'-TCTCAGT-3' at 2613 and complement | |||
|- | |||
| Abscisic acid-responsive element || CACGTG || - || - || Negative strand, positive direction: 5'-CACGTG-3' at 570 and complement | |||
Positive strand, positive direction: 5'-CACGTG-3' at 3884, 5'-CACGTG-3' at 2961, 5'-CACGTG-3' at 1219, and 5'-CACGTG-3' at 547 and complements | |||
|- | |||
| Pho4p || CAC(A/G)T(T/G) || Positive strand, negative direction: 5'-CACATT-3' at 4533 and complement || - || Negative strand, negative direction: 5'-TTACAC-3' at 4091, 5'-AACGTG-3' at 3288, 3'-CACGTT-5' at 2864, 3'-CACATT-5' at 2087, 5'-TTACAC-3' at 2064, 5'-AACGTG-3' at 1718, 3'-CACGTT-5' at 1536, 5'-AACGTG-3' at 1346, 5'-AACGTG-3' at 1338, 3'-CACATG-5' at 797, 3'-CACATT-5' at 612, and 3'-CACATG-5' at 324 and complements | |||
Positive strand, negative direction: 5'-CACATG-3' at 2667, 5'-CACGTT-3' at 343 and complements | |||
Negative strand, positive direction: 5'-CATGTG-3' at 3958, 5'-CACATG-3' at 3956, 5'-CATGTG-3' at 3902, 5'-CACATG-3' at 3742, 5'-CACATG-3' at 3707, 5'-CACATG-3' at 2031, 5'-CACGTG-3' at 570, 5'-AATGTG-3' at 229 and complements | |||
Positive strand, positive direction: 5'-CACGTG-3' at 3884, 5'-CACGTG-3' at 2961, 5'-CACGTT-3' at 2801, 5'-CACGTT-3' at 2335, 5'-CACGTG-3' at 1219, 5'-CACGTG-3' at 547 and complements | |||
|- | |||
| H and ACA box || AGAGGA || Positive strand, negative direction: 5'-AGGACA-3' at 4468 and complements || Negative strand, positive direction: 3'-AGGACA-3' at 4252 and complements || Negative strand, negative direction: 5'-AGGACA-3' at 1911 and complements | |||
Negative strand, positive direction: 5'-ACAGGA-3' at 3572, 3'-AGGACA-3' at 3131, 3'-AGGACA-3' at 2460 and complements | |||
Positive strand, negative direction: 5'-AGGACA-3' at 3756, 5'-AGGACA-3' at 3389, 5'-ACAGGA-3' at 2690 and complements | |||
Positive strand, positive direction: 5'-AGGACA-3' at 3622, 5'-ACAGGA-3' at 3620, 5'-AGGACA-3' at 144 and complements | |||
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Revision as of 04:02, 28 November 2020
Associate Editor(s)-in-Chief: Henry A. Hoff
Def. nucleotide "sequences, usually upstream, which are recognized by specific regulatory transcription factors, thereby causing gene response to various regulatory agents", [that] "may be found in both promoter and enhancer regions"[1] are called response elements.
Hypotheses
- A1BG has all response elements in both promoters.
- A1BG is transcribed by all response elements.
- Each response element participates in the transcription of A1BG.
Response element positive results
Name of elements | Consensus sequences | Core promoters | Proximal promoters | Distal promoters |
---|---|---|---|---|
ABA responsive element (ABRE) | ACGTG(G/T)C | Positive strand, positive direction: 5'-ACGTGGC-3' at 4344 and complement | Positive strand, negative direction: 5'-ACGTGGC-3' at 4239 and complement | Negative strand, negative direction: 5'-CTGTGCA-3' at 3429 and complement
Positive strand, positive direction: 5'-GACACGT-3' at 2960, 5'-ACGTGTC-3' at 1823 and complements |
Abf1 regulatory factor | CGTNNNNN(A/G)(C/T)GA(C/T) | - | - | Positive strand, negative direction: 5'-CGTTCTTTATGAT-3' at 352 and complement
Positive strand, positive direction: 5'-CGTCACCGGTGAC-3' at 2073, 5'-CGTTCGGTGTGAC-3' at 346 and complements |
A box | TACGTA | - | Negative strand, negative direction: 5'-TACGTA-3' at 4246 and complement | Positive strand, positive direction: 5'-TACGTA-3' at 3071 and complement |
Box A | TGACTCT | - | - | Positive strand, negative direction: 5'-TGACTCT-3' at 2788 and complement
Positive strand, positive direction: 5'-TCTCAGT-3' at 2613 and complement |
Abscisic acid-responsive element | CACGTG | - | - | Negative strand, positive direction: 5'-CACGTG-3' at 570 and complement
Positive strand, positive direction: 5'-CACGTG-3' at 3884, 5'-CACGTG-3' at 2961, 5'-CACGTG-3' at 1219, and 5'-CACGTG-3' at 547 and complements |
Pho4p | CAC(A/G)T(T/G) | Positive strand, negative direction: 5'-CACATT-3' at 4533 and complement | - | Negative strand, negative direction: 5'-TTACAC-3' at 4091, 5'-AACGTG-3' at 3288, 3'-CACGTT-5' at 2864, 3'-CACATT-5' at 2087, 5'-TTACAC-3' at 2064, 5'-AACGTG-3' at 1718, 3'-CACGTT-5' at 1536, 5'-AACGTG-3' at 1346, 5'-AACGTG-3' at 1338, 3'-CACATG-5' at 797, 3'-CACATT-5' at 612, and 3'-CACATG-5' at 324 and complements
Positive strand, negative direction: 5'-CACATG-3' at 2667, 5'-CACGTT-3' at 343 and complements Negative strand, positive direction: 5'-CATGTG-3' at 3958, 5'-CACATG-3' at 3956, 5'-CATGTG-3' at 3902, 5'-CACATG-3' at 3742, 5'-CACATG-3' at 3707, 5'-CACATG-3' at 2031, 5'-CACGTG-3' at 570, 5'-AATGTG-3' at 229 and complements Positive strand, positive direction: 5'-CACGTG-3' at 3884, 5'-CACGTG-3' at 2961, 5'-CACGTT-3' at 2801, 5'-CACGTT-3' at 2335, 5'-CACGTG-3' at 1219, 5'-CACGTG-3' at 547 and complements |
H and ACA box | AGAGGA | Positive strand, negative direction: 5'-AGGACA-3' at 4468 and complements | Negative strand, positive direction: 3'-AGGACA-3' at 4252 and complements | Negative strand, negative direction: 5'-AGGACA-3' at 1911 and complements
Negative strand, positive direction: 5'-ACAGGA-3' at 3572, 3'-AGGACA-3' at 3131, 3'-AGGACA-3' at 2460 and complements Positive strand, negative direction: 5'-AGGACA-3' at 3756, 5'-AGGACA-3' at 3389, 5'-ACAGGA-3' at 2690 and complements Positive strand, positive direction: 5'-AGGACA-3' at 3622, 5'-ACAGGA-3' at 3620, 5'-AGGACA-3' at 144 and complements |
Acknowledgements
The content on this page was first contributed by: Henry A. Hoff.
See also
References
- ↑ MeSH (8 July 2008). "Response Elements". U.S. National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894: National Institutes of Health, Health & Human Services. Retrieved 2 September 2020.