CLCN3: Difference between revisions

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{{Infobox_gene}}
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'''H<sup>+</sup>/Cl<sup>−</sup> exchange transporter 3''' is a [[protein]] that in humans is encoded by the ''CLCN3'' [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: CLCN3 chloride channel 3| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=1182| accessdate = }}</ref>
| update_page = yes
| require_manual_inspection = no
| update_protein_box = yes
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== Interactions ==
{{GNF_Protein_box
| image =
| image_source =
| PDB =  
| Name = Chloride channel 3
| HGNCid = 2021
| Symbol = CLCN3
| AltSymbols =; CLC3; ClC-3
| OMIM = 600580
| ECnumber = 
| Homologene = 20435
| MGIid = 103555
| GeneAtlas_image1 = PBB_GE_CLCN3_201734_at_tn.png
| GeneAtlas_image2 = PBB_GE_CLCN3_201732_s_at_tn.png
| GeneAtlas_image3 = PBB_GE_CLCN3_201733_at_tn.png
| Function = {{GNF_GO|id=GO:0005247 |text = voltage-gated chloride channel activity}} {{GNF_GO|id=GO:0005515 |text = protein binding}} {{GNF_GO|id=GO:0030165 |text = PDZ domain binding}} {{GNF_GO|id=GO:0031404 |text = chloride ion binding}} {{GNF_GO|id=GO:0042803 |text = protein homodimerization activity}} {{GNF_GO|id=GO:0046982 |text = protein heterodimerization activity}}
| Component = {{GNF_GO|id=GO:0005769 |text = early endosome}} {{GNF_GO|id=GO:0005770 |text = late endosome}} {{GNF_GO|id=GO:0005794 |text = Golgi apparatus}} {{GNF_GO|id=GO:0009986 |text = cell surface}} {{GNF_GO|id=GO:0012506 |text = vesicle membrane}} {{GNF_GO|id=GO:0016020 |text = membrane}} {{GNF_GO|id=GO:0016021 |text = integral to membrane}}
| Process = {{GNF_GO|id=GO:0006811 |text = ion transport}} {{GNF_GO|id=GO:0006821 |text = chloride transport}} {{GNF_GO|id=GO:0006885 |text = regulation of pH}} {{GNF_GO|id=GO:0048388 |text = endosomal lumen acidification}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 1182
    | Hs_Ensembl = ENSG00000109572
    | Hs_RefseqProtein = NP_001820
    | Hs_RefseqmRNA = NM_001829
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 4
    | Hs_GenLoc_start = 170778297
    | Hs_GenLoc_end = 170878731
    | Hs_Uniprot = P51790
    | Mm_EntrezGene = 12725
    | Mm_Ensembl = ENSMUSG00000004319
    | Mm_RefseqmRNA = NM_007711
    | Mm_RefseqProtein = NP_031737
    | Mm_GenLoc_db = 
    | Mm_GenLoc_chr = 8
    | Mm_GenLoc_start = 63802531
    | Mm_GenLoc_end = 63875442
    | Mm_Uniprot = Q6PEV2
  }}
}}
'''Chloride channel 3''', also known as '''CLCN3''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: CLCN3 chloride channel 3| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=1182| accessdate = }}</ref>


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CLCN3 has been shown to [[Protein-protein interaction|interact]] with [[PDZK1]].<ref name=pmid12471024>{{cite journal | vauthors = Gentzsch M, Cui L, Mengos A, Chang XB, Chen JH, Riordan JR | title = The PDZ-binding chloride channel ClC-3B localizes to the Golgi and associates with cystic fibrosis transmembrane conductance regulator-interacting PDZ proteins | journal = J. Biol. Chem. | volume = 278 | issue = 8 | pages = 6440–9 | date = Feb 2003 | pmid = 12471024 | doi = 10.1074/jbc.M211050200 }}</ref>
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==References==
== See also ==
{{reflist|2}}
* [[Chloride channel]]
==Further reading==
 
== References ==
{{reflist}}
 
== Further reading ==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading
* {{cite journal | vauthors = Borsani G, Rugarli EI, Taglialatela M, Wong C, Ballabio A | title = Characterization of a human and murine gene (CLCN3) sharing similarities to voltage-gated chloride channels and to a yeast integral membrane protein | journal = Genomics | volume = 27 | issue = 1 | pages = 131–41 | year = 1995 | pmid = 7665160 | doi = 10.1006/geno.1995.1015 }}
| citations =
* {{cite journal | vauthors = Taine L, Coupry I, Boisseau P, Saura R, Lacombe D, Arveiler B | title = Refined localisation of the voltage-gated chloride channel, CLCN3, to 4q33 | journal = Hum. Genet. | volume = 102 | issue = 2 | pages = 178–81 | year = 1998 | pmid = 9521585 | doi = 10.1007/s004390050673 }}
*{{cite journal | author=Borsani G, Rugarli EI, Taglialatela M, ''et al.'' |title=Characterization of a human and murine gene (CLCN3) sharing similarities to voltage-gated chloride channels and to a yeast integral membrane protein. |journal=Genomics |volume=27 |issue= 1 |pages= 131-41 |year= 1995 |pmid= 7665160 |doi= 10.1006/geno.1995.1015 }}
* {{cite journal | vauthors = Shepard AR, Rae JL | title = Ion transporters and receptors in cDNA libraries from lens and cornea epithelia | journal = Curr. Eye Res. | volume = 17 | issue = 7 | pages = 708–19 | year = 1998 | pmid = 9678416 | doi = 10.1080/02713689808951247 }}
*{{cite journal | author=Taine L, Coupry I, Boisseau P, ''et al.'' |title=Refined localisation of the voltage-gated chloride channel, CLCN3, to 4q33. |journal=Hum. Genet. |volume=102 |issue= 2 |pages= 178-81 |year= 1998 |pmid= 9521585 |doi= }}
* {{cite journal | vauthors = Loo MA, Jensen TJ, Cui L, Hou Y, Chang XB, Riordan JR | title = Perturbation of Hsp90 interaction with nascent CFTR prevents its maturation and accelerates its degradation by the proteasome | journal = EMBO J. | volume = 17 | issue = 23 | pages = 6879–87 | year = 1998 | pmid = 9843494 | pmc = 1171036 | doi = 10.1093/emboj/17.23.6879 }}
*{{cite journal | author=Shepard AR, Rae JL |title=Ion transporters and receptors in cDNA libraries from lens and cornea epithelia. |journal=Curr. Eye Res. |volume=17 |issue= 7 |pages= 708-19 |year= 1998 |pmid= 9678416 |doi= }}
* {{cite journal | vauthors = Lamb FS, Clayton GH, Liu BX, Smith RL, Barna TJ, Schutte BC | title = Expression of CLCN voltage-gated chloride channel genes in human blood vessels | journal = J. Mol. Cell. Cardiol. | volume = 31 | issue = 3 | pages = 657–66 | year = 1999 | pmid = 10198195 | doi = 10.1006/jmcc.1998.0901 }}
*{{cite journal | author=Loo MA, Jensen TJ, Cui L, ''et al.'' |title=Perturbation of Hsp90 interaction with nascent CFTR prevents its maturation and accelerates its degradation by the proteasome. |journal=EMBO J. |volume=17 |issue= 23 |pages= 6879-87 |year= 1999 |pmid= 9843494 |doi= 10.1093/emboj/17.23.6879 }}
* {{cite journal | vauthors = Hartley JL, Temple GF, Brasch MA | title = DNA cloning using in vitro site-specific recombination | journal = Genome Res. | volume = 10 | issue = 11 | pages = 1788–95 | year = 2000 | pmid = 11076863 | pmc = 310948 | doi = 10.1101/gr.143000 }}
*{{cite journal | author=Lamb FS, Clayton GH, Liu BX, ''et al.'' |title=Expression of CLCN voltage-gated chloride channel genes in human blood vessels. |journal=J. Mol. Cell. Cardiol. |volume=31 |issue= 3 |pages= 657-66 |year= 1999 |pmid= 10198195 |doi= 10.1006/jmcc.1998.0901 }}
* {{cite journal | vauthors = Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, Mewes HW, Ottenwälder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A | title = Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs | journal = Genome Res. | volume = 11 | issue = 3 | pages = 422–35 | year = 2001 | pmid = 11230166 | pmc = 311072 | doi = 10.1101/gr.GR1547R }}
*{{cite journal | author=Hartley JL, Temple GF, Brasch MA |title=DNA cloning using in vitro site-specific recombination. |journal=Genome Res. |volume=10 |issue= 11 |pages= 1788-95 |year= 2001 |pmid= 11076863 |doi= }}
* {{cite journal | vauthors = Huang P, Liu J, Di A, Robinson NC, Musch MW, Kaetzel MA, Nelson DJ | title = Regulation of human CLC-3 channels by multifunctional Ca2+/calmodulin-dependent protein kinase | journal = J. Biol. Chem. | volume = 276 | issue = 23 | pages = 20093–100 | year = 2001 | pmid = 11274166 | doi = 10.1074/jbc.M009376200 }}
*{{cite journal | author=Wiemann S, Weil B, Wellenreuther R, ''et al.'' |title=Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. |journal=Genome Res. |volume=11 |issue= 3 |pages= 422-35 |year= 2001 |pmid= 11230166 |doi= 10.1101/gr.154701 }}
* {{cite journal | vauthors = Lamb FS, Graeff RW, Clayton GH, Smith RL, Schutte BC, McCray PB | title = Ontogeny of CLCN3 chloride channel gene expression in human pulmonary epithelium | journal = Am. J. Respir. Cell Mol. Biol. | volume = 24 | issue = 4 | pages = 376–81 | year = 2001 | pmid = 11306429 | doi = 10.1165/ajrcmb.24.4.4114 }}
*{{cite journal | author=Huang P, Liu J, Di A, ''et al.'' |title=Regulation of human CLC-3 channels by multifunctional Ca2+/calmodulin-dependent protein kinase. |journal=J. Biol. Chem. |volume=276 |issue= 23 |pages= 20093-100 |year= 2001 |pmid= 11274166 |doi= 10.1074/jbc.M009376200 }}
* {{cite journal | vauthors = Ogura T, Furukawa T, Toyozaki T, Yamada K, Zheng YJ, Katayama Y, Nakaya H, Inagaki N | title = ClC-3B, a novel ClC-3 splicing variant that interacts with EBP50 and facilitates expression of CFTR-regulated ORCC | journal = FASEB J. | volume = 16 | issue = 8 | pages = 863–5 | year = 2002 | pmid = 11967229 | doi = 10.1096/fj.01-0845fje }}
*{{cite journal | author=Lamb FS, Graeff RW, Clayton GH, ''et al.'' |title=Ontogeny of CLCN3 chloride channel gene expression in human pulmonary epithelium. |journal=Am. J. Respir. Cell Mol. Biol. |volume=24 |issue= 4 |pages= 376-81 |year= 2001 |pmid= 11306429 |doi= }}
* {{cite journal | vauthors = Hermoso M, Satterwhite CM, Andrade YN, Hidalgo J, Wilson SM, Horowitz B, Hume JR | title = ClC-3 is a fundamental molecular component of volume-sensitive outwardly rectifying Cl- channels and volume regulation in HeLa cells and Xenopus laevis oocytes | journal = J. Biol. Chem. | volume = 277 | issue = 42 | pages = 40066–74 | year = 2002 | pmid = 12183454 | doi = 10.1074/jbc.M205132200 }}
*{{cite journal | author=Ogura T, Furukawa T, Toyozaki T, ''et al.'' |title=ClC-3B, a novel ClC-3 splicing variant that interacts with EBP50 and facilitates expression of CFTR-regulated ORCC. |journal=FASEB J. |volume=16 |issue= 8 |pages= 863-5 |year= 2002 |pmid= 11967229 |doi= 10.1096/fj.01-0845fje }}
* {{cite journal | vauthors = Gentzsch M, Cui L, Mengos A, Chang XB, Chen JH, Riordan JR | title = The PDZ-binding chloride channel ClC-3B localizes to the Golgi and associates with cystic fibrosis transmembrane conductance regulator-interacting PDZ proteins | journal = J. Biol. Chem. | volume = 278 | issue = 8 | pages = 6440–9 | year = 2003 | pmid = 12471024 | doi = 10.1074/jbc.M211050200 }}
*{{cite journal | author=Hermoso M, Satterwhite CM, Andrade YN, ''et al.'' |title=ClC-3 is a fundamental molecular component of volume-sensitive outwardly rectifying Cl- channels and volume regulation in HeLa cells and Xenopus laevis oocytes. |journal=J. Biol. Chem. |volume=277 |issue= 42 |pages= 40066-74 |year= 2002 |pmid= 12183454 |doi= 10.1074/jbc.M205132200 }}
* {{cite journal | vauthors = Jin NG, Kim JK, Yang DK, Cho SJ, Kim JM, Koh EJ, Jung HC, So I, Kim KW | title = Fundamental role of ClC-3 in volume-sensitive Cl- channel function and cell volume regulation in AGS cells | journal = Am. J. Physiol. Gastrointest. Liver Physiol. | volume = 285 | issue = 5 | pages = G938-48 | year = 2003 | pmid = 12842831 | doi = 10.1152/ajpgi.00470.2002 }}
*{{cite journal | author=Gentzsch M, Cui L, Mengos A, ''et al.'' |title=The PDZ-binding chloride channel ClC-3B localizes to the Golgi and associates with cystic fibrosis transmembrane conductance regulator-interacting PDZ proteins. |journal=J. Biol. Chem. |volume=278 |issue= 8 |pages= 6440-9 |year= 2003 |pmid= 12471024 |doi= 10.1074/jbc.M211050200 }}
* {{cite journal | vauthors = Olsen ML, Schade S, Lyons SA, Amaral MD, Sontheimer H | title = Expression of voltage-gated chloride channels in human glioma cells | journal = J. Neurosci. | volume = 23 | issue = 13 | pages = 5572–82 | year = 2003 | pmid = 12843258 | doi = }}
*{{cite journal | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
* {{cite journal | vauthors = Salazar G, Love R, Styers ML, Werner E, Peden A, Rodriguez S, Gearing M, Wainer BH, Faundez V | title = AP-3-dependent mechanisms control the targeting of a chloride channel (ClC-3) in neuronal and non-neuronal cells | journal = J. Biol. Chem. | volume = 279 | issue = 24 | pages = 25430–9 | year = 2004 | pmid = 15073168 | doi = 10.1074/jbc.M402331200 }}
*{{cite journal | author=Jin NG, Kim JK, Yang DK, ''et al.'' |title=Fundamental role of ClC-3 in volume-sensitive Cl- channel function and cell volume regulation in AGS cells. |journal=Am. J. Physiol. Gastrointest. Liver Physiol. |volume=285 |issue= 5 |pages= G938-48 |year= 2003 |pmid= 12842831 |doi= 10.1152/ajpgi.00470.2002 }}
* {{cite journal | vauthors = Wiemann S, Arlt D, Huber W, Wellenreuther R, Schleeger S, Mehrle A, Bechtel S, Sauermann M, Korf U, Pepperkok R, Sültmann H, Poustka A | title = From ORFeome to biology: a functional genomics pipeline | journal = Genome Res. | volume = 14 | issue = 10B | pages = 2136–44 | year = 2004 | pmid = 15489336 | pmc = 528930 | doi = 10.1101/gr.2576704 }}
*{{cite journal | author=Olsen ML, Schade S, Lyons SA, ''et al.'' |title=Expression of voltage-gated chloride channels in human glioma cells. |journal=J. Neurosci. |volume=23 |issue= 13 |pages= 5572-82 |year= 2003 |pmid= 12843258 |doi= }}
* {{cite journal | vauthors = Zhou JG, Ren JL, Qiu QY, He H, Guan YY | title = Regulation of intracellular Cl- concentration through volume-regulated ClC-3 chloride channels in A10 vascular smooth muscle cells | journal = J. Biol. Chem. | volume = 280 | issue = 8 | pages = 7301–8 | year = 2005 | pmid = 15596438 | doi = 10.1074/jbc.M412813200 }}
*{{cite journal | author=Salazar G, Love R, Styers ML, ''et al.'' |title=AP-3-dependent mechanisms control the targeting of a chloride channel (ClC-3) in neuronal and non-neuronal cells. |journal=J. Biol. Chem. |volume=279 |issue= 24 |pages= 25430-9 |year= 2004 |pmid= 15073168 |doi= 10.1074/jbc.M402331200 }}
* {{cite journal | vauthors = Yeung CH, Barfield JP, Cooper TG | title = Chloride channels in physiological volume regulation of human spermatozoa | journal = Biol. Reprod. | volume = 73 | issue = 5 | pages = 1057–63 | year = 2005 | pmid = 16033995 | doi = 10.1095/biolreprod.105.044123 }}
*{{cite journal | author=Wiemann S, Arlt D, Huber W, ''et al.'' |title=From ORFeome to biology: a functional genomics pipeline. |journal=Genome Res. |volume=14 |issue= 10B |pages= 2136-44 |year= 2004 |pmid= 15489336 |doi= 10.1101/gr.2576704 }}
* {{cite journal | vauthors = Mehrle A, Rosenfelder H, Schupp I, del Val C, Arlt D, Hahne F, Bechtel S, Simpson J, Hofmann O, Hide W, Glatting KH, Huber W, Pepperkok R, Poustka A, Wiemann S | title = The LIFEdb database in 2006 | journal = Nucleic Acids Res. | volume = 34 | issue = Database issue | pages = D415-8 | year = 2006 | pmid = 16381901 | pmc = 1347501 | doi = 10.1093/nar/gkj139 }}
*{{cite journal | author=Zhou JG, Ren JL, Qiu QY, ''et al.'' |title=Regulation of intracellular Cl- concentration through volume-regulated ClC-3 chloride channels in A10 vascular smooth muscle cells. |journal=J. Biol. Chem. |volume=280 |issue= 8 |pages= 7301-8 |year= 2005 |pmid= 15596438 |doi= 10.1074/jbc.M412813200 }}
*{{cite journal | author=Yeung CH, Barfield JP, Cooper TG |title=Chloride channels in physiological volume regulation of human spermatozoa. |journal=Biol. Reprod. |volume=73 |issue= 5 |pages= 1057-63 |year= 2006 |pmid= 16033995 |doi= 10.1095/biolreprod.105.044123 }}
*{{cite journal  | author=Mehrle A, Rosenfelder H, Schupp I, ''et al.'' |title=The LIFEdb database in 2006. |journal=Nucleic Acids Res. |volume=34 |issue= Database issue |pages= D415-8 |year= 2006 |pmid= 16381901 |doi= 10.1093/nar/gkj139 }}
}}
{{refend}}
{{refend}}


{{protein-stub}}
== External links ==
{{WikiDoc Sources}}
* {{MeshName|CLCN3+protein,+human}}
* {{UCSC gene info|CLCN3}}
 
{{NLM content}}
{{Ion channels|g4}}
 
[[Category:Ion channels]]
 
 
{{gene-4-stub}}

Latest revision as of 09:45, 30 August 2017

VALUE_ERROR (nil)
Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

n/a

n/a

RefSeq (protein)

n/a

n/a

Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

H+/Cl exchange transporter 3 is a protein that in humans is encoded by the CLCN3 gene.[1]

Interactions

CLCN3 has been shown to interact with PDZK1.[2]

See also

References

  1. "Entrez Gene: CLCN3 chloride channel 3".
  2. Gentzsch M, Cui L, Mengos A, Chang XB, Chen JH, Riordan JR (Feb 2003). "The PDZ-binding chloride channel ClC-3B localizes to the Golgi and associates with cystic fibrosis transmembrane conductance regulator-interacting PDZ proteins". J. Biol. Chem. 278 (8): 6440–9. doi:10.1074/jbc.M211050200. PMID 12471024.

Further reading

External links

This article incorporates text from the United States National Library of Medicine, which is in the public domain.