PDLIM4: Difference between revisions

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'''PDZ and LIM domain protein 4''' is a [[protein]] that in humans is encoded by the ''PDLIM4'' [[gene]].<ref name="pmid9573374">{{cite journal | vauthors = Bashirova AA, Markelov ML, Shlykova TV, Levshenkova EV, Alibaeva RA, Frolova EI | title = The human RIL gene: mapping to human chromosome 5q31.1, genomic organization and alternative transcripts | journal = Gene | volume = 210 | issue = 2 | pages = 239–45 |date=Jun 1998 | pmid = 9573374 | pmc =  | doi =10.1016/S0378-1119(98)00080-8 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: PDLIM4 PDZ and LIM domain 4| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8572| accessdate = }}</ref>
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{{GNF_Protein_box
| image = 
| image_source = 
| PDB =
| Name = PDZ and LIM domain 4
| HGNCid = 16501
| Symbol = PDLIM4
| AltSymbols =; RIL
| OMIM = 603422
| ECnumber = 
| Homologene = 2735
| MGIid = 1353470
| GeneAtlas_image1 = PBB_GE_PDLIM4_211564_s_at_tn.png
| GeneAtlas_image2 = PBB_GE_PDLIM4_214175_x_at_tn.png
| GeneAtlas_image3 = PBB_GE_PDLIM4_218691_s_at_tn.png
| Function = {{GNF_GO|id=GO:0005515 |text = protein binding}} {{GNF_GO|id=GO:0008270 |text = zinc ion binding}} {{GNF_GO|id=GO:0046872 |text = metal ion binding}}
| Component =  
| Process =  
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 8572
    | Hs_Ensembl = ENSG00000131435
    | Hs_RefseqProtein = NP_003678
    | Hs_RefseqmRNA = NM_003687
    | Hs_GenLoc_db =   
    | Hs_GenLoc_chr = 5
    | Hs_GenLoc_start = 131621263
    | Hs_GenLoc_end = 131637046
    | Hs_Uniprot = P50479
    | Mm_EntrezGene = 30794
    | Mm_Ensembl = ENSMUSG00000020388
    | Mm_RefseqmRNA = NM_019417
    | Mm_RefseqProtein = NP_062290
    | Mm_GenLoc_db =   
    | Mm_GenLoc_chr = 11
    | Mm_GenLoc_start = 53898355
    | Mm_GenLoc_end = 53912391
    | Mm_Uniprot = Q5SWV2
  }}
}}
'''PDZ and LIM domain 4''', also known as '''PDLIM4''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: PDLIM4 PDZ and LIM domain 4| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8572| accessdate = }}</ref>


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==References==
==References==
{{reflist|2}}
{{reflist}}
 
==Further reading==
==Further reading==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading  
{{PBB_Further_reading  
| citations =  
| citations =  
*{{cite journal  | author=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1-2 |pages= 171-4 |year= 1994 |pmid= 8125298 |doi=  }}
*{{cite journal  | vauthors=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1–2 |pages= 171–4 |year= 1994 |pmid= 8125298 |doi=10.1016/0378-1119(94)90802-8 }}
*{{cite journal | author=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, ''et al.'' |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. |journal=Gene |volume=200 |issue= 1-2 |pages= 149-56 |year= 1997 |pmid= 9373149 |doi= }}
*{{cite journal   |vauthors=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, etal |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library |journal=Gene |volume=200 |issue= 1–2 |pages= 149–56 |year= 1997 |pmid= 9373149 |doi=10.1016/S0378-1119(97)00411-3 }}
*{{cite journal  | author=Bashirova AA, Markelov ML, Shlykova TV, ''et al.'' |title=The human RIL gene: mapping to human chromosome 5q31.1, genomic organization and alternative transcripts. |journal=Gene |volume=210 |issue= 2 |pages= 239-45 |year= 1998 |pmid= 9573374 |doi= }}
*{{cite journal   |vauthors=Cuppen E, van Ham M, Wansink DG, etal |title=The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL |journal=Eur. J. Cell Biol. |volume=79 |issue= 4 |pages= 283–93 |year= 2000 |pmid= 10826496 |doi=10.1078/S0171-9335(04)70031-X }}
*{{cite journal | author=Cuppen E, van Ham M, Wansink DG, ''et al.'' |title=The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL. |journal=Eur. J. Cell Biol. |volume=79 |issue= 4 |pages= 283-93 |year= 2000 |pmid= 10826496 |doi=  }}
*{{cite journal   |vauthors=Walma T, Spronk CA, Tessari M, etal |title=Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL |journal=J. Mol. Biol. |volume=316 |issue= 5 |pages= 1101–10 |year= 2002 |pmid= 11884147 |doi= 10.1006/jmbi.2002.5402 }}
*{{cite journal | author=Walma T, Spronk CA, Tessari M, ''et al.'' |title=Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL. |journal=J. Mol. Biol. |volume=316 |issue= 5 |pages= 1101-10 |year= 2002 |pmid= 11884147 |doi= 10.1006/jmbi.2002.5402 }}
*{{cite journal   |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 }}
*{{cite journal | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal   |vauthors=Omasu F, Ezura Y, Kajita M, etal |title=Association of genetic variation of the RIL gene, encoding a PDZ-LIM domain protein and localized in 5q31.1, with low bone mineral density in adult Japanese women |journal=J. Hum. Genet. |volume=48 |issue= 7 |pages= 342–5 |year= 2003 |pmid= 12908099 |doi= 10.1007/s10038-003-0035-1 }}
*{{cite journal | author=Omasu F, Ezura Y, Kajita M, ''et al.'' |title=Association of genetic variation of the RIL gene, encoding a PDZ-LIM domain protein and localized in 5q31.1, with low bone mineral density in adult Japanese women. |journal=J. Hum. Genet. |volume=48 |issue= 7 |pages= 342-5 |year= 2003 |pmid= 12908099 |doi= 10.1007/s10038-003-0035-1 }}
*{{cite journal   |vauthors=Vallenius T, Scharm B, Vesikansa A, etal |title=The PDZ-LIM protein RIL modulates actin stress fiber turnover and enhances the association of alpha-actinin with F-actin |journal=Exp. Cell Res. |volume=293 |issue= 1 |pages= 117–28 |year= 2004 |pmid= 14729062 |doi=10.1016/j.yexcr.2003.09.004 }}
*{{cite journal | author=Vallenius T, Scharm B, Vesikansa A, ''et al.'' |title=The PDZ-LIM protein RIL modulates actin stress fiber turnover and enhances the association of alpha-actinin with F-actin. |journal=Exp. Cell Res. |volume=293 |issue= 1 |pages= 117-28 |year= 2004 |pmid= 14729062 |doi=  }}
*{{cite journal  | vauthors=Lehner B, Sanderson CM |title=A protein interaction framework for human mRNA degradation |journal=Genome Res. |volume=14 |issue= 7 |pages= 1315–23 |year= 2004 |pmid= 15231747 |doi= 10.1101/gr.2122004 | pmc=442147 }}
*{{cite journal  | author=Lehner B, Sanderson CM |title=A protein interaction framework for human mRNA degradation. |journal=Genome Res. |volume=14 |issue= 7 |pages= 1315-23 |year= 2004 |pmid= 15231747 |doi= 10.1101/gr.2122004 }}
*{{cite journal   |vauthors=Gerhard DS, Wagner L, Feingold EA, etal |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC) |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 | pmc=528928 }}
*{{cite journal | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
*{{cite journal   |vauthors=van den Berk LC, van Ham MA, te Lindert MM, etal |title=The interaction of PTP-BL PDZ domains with RIL: an enigmatic role for the RIL LIM domain |journal=Mol. Biol. Rep. |volume=31 |issue= 4 |pages= 203–15 |year= 2005 |pmid= 15663004 |doi=10.1007/s11033-005-1407-8 }}
*{{cite journal | author=van den Berk LC, van Ham MA, te Lindert MM, ''et al.'' |title=The interaction of PTP-BL PDZ domains with RIL: an enigmatic role for the RIL LIM domain. |journal=Mol. Biol. Rep. |volume=31 |issue= 4 |pages= 203-15 |year= 2005 |pmid= 15663004 |doi=  }}
*{{cite journal   |vauthors=Rual JF, Venkatesan K, Hao T, etal |title=Towards a proteome-scale map of the human protein-protein interaction network |journal=Nature |volume=437 |issue= 7062 |pages= 1173–8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
*{{cite journal | author=Rual JF, Venkatesan K, Hao T, ''et al.'' |title=Towards a proteome-scale map of the human protein-protein interaction network. |journal=Nature |volume=437 |issue= 7062 |pages= 1173-8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
*{{cite journal  | vauthors=Schwartz LM, Woloshin S, Birkmeyer JD |title=How do elderly patients decide where to go for major surgery? Telephone interview survey |journal=BMJ |volume=331 |issue= 7520 |pages= 821 |year= 2005 |pmid= 16192286 |doi= 10.1136/bmj.38614.449016.DE | pmc=1246083 }}
*{{cite journal  | author=Schwartz LM, Woloshin S, Birkmeyer JD |title=How do elderly patients decide where to go for major surgery? Telephone interview survey. |journal=BMJ |volume=331 |issue= 7520 |pages= 821 |year= 2005 |pmid= 16192286 |doi= 10.1136/bmj.38614.449016.DE }}
*{{cite journal   |vauthors=Boumber YA, Kondo Y, Chen X, etal |title=RIL, a LIM gene on 5q31, is silenced by methylation in cancer and sensitizes cancer cells to apoptosis |journal=Cancer Res. |volume=67 |issue= 5 |pages= 1997–2005 |year= 2007 |pmid= 17332327 |doi= 10.1158/0008-5472.CAN-06-3093 }}
*{{cite journal | author=Boumber YA, Kondo Y, Chen X, ''et al.'' |title=RIL, a LIM gene on 5q31, is silenced by methylation in cancer and sensitizes cancer cells to apoptosis. |journal=Cancer Res. |volume=67 |issue= 5 |pages= 1997-2005 |year= 2007 |pmid= 17332327 |doi= 10.1158/0008-5472.CAN-06-3093 }}
}}
}}
{{refend}}
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Revision as of 17:51, 7 September 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

PDZ and LIM domain protein 4 is a protein that in humans is encoded by the PDLIM4 gene.[1][2]


References

  1. ↑ Bashirova AA, Markelov ML, Shlykova TV, Levshenkova EV, Alibaeva RA, Frolova EI (Jun 1998). "The human RIL gene: mapping to human chromosome 5q31.1, genomic organization and alternative transcripts". Gene. 210 (2): 239–45. doi:10.1016/S0378-1119(98)00080-8. PMID 9573374.
  2. ↑ "Entrez Gene: PDLIM4 PDZ and LIM domain 4".

Further reading



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