HOXD10: Difference between revisions

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<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
{{Infobox_gene}}
{{PBB_Controls
'''Homeobox D10''', also known as '''HOXD10''', is a [[protein]] which in humans is encoded by the ''HOXD10'' [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: HOXD10 homeobox D10| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3236| accessdate = }}</ref>
| update_page = yes
| require_manual_inspection = no
| update_protein_box = yes
| update_summary = yes
| update_citations = yes
}}


<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
== Function ==
{{GNF_Protein_box
| image =
| image_source =
| PDB =
| Name = Homeobox D10
| HGNCid = 5133
| Symbol = HOXD10
| AltSymbols =; HOX4; HOX4E; HOX4D; Hox-4.4
| OMIM = 142984
| ECnumber = 
| Homologene = 1619
| MGIid = 96202
| GeneAtlas_image1 = PBB_GE_HOXD10_207373_at_tn.png
| Function = {{GNF_GO|id=GO:0003700 |text = transcription factor activity}} {{GNF_GO|id=GO:0003702 |text = RNA polymerase II transcription factor activity}} {{GNF_GO|id=GO:0005515 |text = protein binding}} {{GNF_GO|id=GO:0043565 |text = sequence-specific DNA binding}}
| Component = {{GNF_GO|id=GO:0005634 |text = nucleus}}
| Process = {{GNF_GO|id=GO:0001501 |text = skeletal development}} {{GNF_GO|id=GO:0006355 |text = regulation of transcription, DNA-dependent}} {{GNF_GO|id=GO:0007275 |text = multicellular organismal development}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 3236
    | Hs_Ensembl = ENSG00000128710
    | Hs_RefseqProtein = NP_002139
    | Hs_RefseqmRNA = NM_002148
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 2
    | Hs_GenLoc_start = 176689746
    | Hs_GenLoc_end = 176692672
    | Hs_Uniprot = P28358
    | Mm_EntrezGene = 15430
    | Mm_Ensembl = ENSMUSG00000050368
    | Mm_RefseqmRNA = NM_013554
    | Mm_RefseqProtein = NP_038582
    | Mm_GenLoc_db = 
    | Mm_GenLoc_chr = 2
    | Mm_GenLoc_start = 74492809
    | Mm_GenLoc_end = 74495942
    | Mm_Uniprot = P28359
  }}
}}
'''Homeobox D10''', also known as '''HOXD10''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: HOXD10 homeobox D10| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3236| accessdate = }}</ref>


<!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
This gene is a member of the Abd-B [[homeobox]] family and encodes a protein with a homeobox [[DNA-binding domain]]. It is included in a cluster of homeobox D genes located on chromosome 2. The encoded nuclear protein functions as a sequence-specific [[transcription factor]] that is expressed in the developing limb buds and is involved in differentiation and limb development.  
{{PBB_Summary
| section_title =
| summary_text = This gene is a member of the Abd-B homeobox family and encodes a protein with a homeobox DNA-binding domain. It is included in a cluster of homeobox D genes located on chromosome 2. The encoded nuclear protein functions as a sequence-specific transcription factor that is expressed in the developing limb buds and is involved in differentiation and limb development. Mutations in this gene have been associated with Wilm's tumor and congenital vertical talus (also known as &quot;rocker-bottom foot&quot; deformity or congenital convex pes valgus) and/or a foot deformity resembling that seen in Charcot-Marie-Tooth disease.<ref name="entrez">{{cite web | title = Entrez Gene: HOXD10 homeobox D10| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3236| accessdate = }}</ref>
}}


==See also==
== Clinical significance ==
 
Mutations in this gene have been associated with [[Wilms' tumor]] and congenital vertical talus (also known as "[[rocker-bottom foot]]" deformity or congenital convex pes valgus) and/or a foot deformity resembling that seen in [[Charcot-Marie-Tooth disease]].<ref name="entrez"/>{{citation needed|date=February 2012}}
 
== Regulation ==
 
The ''HOXD10'' gene is [[Gene expression|repressed]] by the [[microRNAs]] [[Mir-10 microRNA precursor family|miR-10a]] and [[Mir-10 microRNA precursor family|miR-10b]].<ref name="pmid19461655">{{cite journal | vauthors = Lund AH | title = miR-10 in development and cancer | journal = Cell Death and Differentiation | volume = 17 | issue = 2 | pages = 209–14 | date = Feb 2010 | pmid = 19461655 | doi = 10.1038/cdd.2009.58 | url = https://www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&tool=sumsearch.org/cite&retmode=ref&cmd=prlinks&id=19461655 }} </ref><ref name="pmid17898713">{{cite journal | vauthors = Ma L, Teruya-Feldstein J, Weinberg RA | title = Tumour invasion and metastasis initiated by microRNA-10b in breast cancer | journal = Nature | volume = 449 | issue = 7163 | pages = 682–8 | date = Oct 2007 | pmid = 17898713 | doi = 10.1038/nature06174 | url = https://www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&tool=sumsearch.org/cite&retmode=ref&cmd=prlinks&id=17898713 }} </ref><ref name="pmid17660710">{{cite journal | vauthors = Han L, Witmer PD, Casey E, Valle D, Sukumar S | title = DNA methylation regulates MicroRNA expression | journal = Cancer Biology & Therapy | volume = 6 | issue = 8 | pages = 1284–8 | date = Aug 2007 | pmid = 17660710 | url = https://www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&tool=sumsearch.org/cite&retmode=ref&cmd=prlinks&id=17660710 }} </ref>
 
== See also ==
* [[Homeobox]]
* [[Homeobox]]


==References==
== References ==
{{reflist|2}}
{{reflist}}


==Further reading==
== Further reading ==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading
* {{cite journal | vauthors = Ma L, Teruya-Feldstein J, Weinberg RA | title = Tumour invasion and metastasis initiated by microRNA-10b in breast cancer | journal = Nature | volume = 449 | issue = 7163 | pages = 682–8 | date = Oct 2007 | pmid = 17898713 | doi = 10.1038/nature06174 }}
| citations =  
* {{cite journal | vauthors = Tabin CJ | title = Why we have (only) five fingers per hand: hox genes and the evolution of paired limbs | journal = Development | volume = 116 | issue = 2 | pages = 289–96 | date = Oct 1992 | pmid = 1363084 | doi =  }}
*{{cite journal | author=Tabin CJ |title=Why we have (only) five fingers per hand: hox genes and the evolution of paired limbs. |journal=Development |volume=116 |issue= 2 |pages= 289-96 |year= 1993 |pmid= 1363084 |doi=  }}
* {{cite journal | vauthors = Goodman FR | title = Limb malformations and the human HOX genes | journal = American Journal of Medical Genetics | volume = 112 | issue = 3 | pages = 256–65 | date = Oct 2002 | pmid = 12357469 | doi = 10.1002/ajmg.10776 }}
*{{cite journal | author=Goodman FR |title=Limb malformations and the human HOX genes. |journal=Am. J. Med. Genet. |volume=112 |issue= 3 |pages= 256-65 |year= 2003 |pmid= 12357469 |doi= 10.1002/ajmg.10776 }}
* {{cite journal | vauthors = Redline RW, Williams AJ, Patterson P, Collins T | title = Human HOX4E: a gene strongly expressed in the adult male and female urogenital tracts | journal = Genomics | volume = 13 | issue = 2 | pages = 425–30 | date = Jun 1992 | pmid = 1351871 | doi = 10.1016/0888-7543(92)90263-R }}
*{{cite journal | author=Redline RW, Williams AJ, Patterson P, Collins T |title=Human HOX4E: a gene strongly expressed in the adult male and female urogenital tracts. |journal=Genomics |volume=13 |issue= 2 |pages= 425-30 |year= 1992 |pmid= 1351871 |doi= }}
* {{cite journal | vauthors = Scott MP | title = Vertebrate homeobox gene nomenclature | journal = Cell | volume = 71 | issue = 4 | pages = 551–3 | date = Nov 1992 | pmid = 1358459 | doi = 10.1016/0092-8674(92)90588-4 }}
*{{cite journal | author=Scott MP |title=Vertebrate homeobox gene nomenclature. |journal=Cell |volume=71 |issue= 4 |pages= 551-3 |year= 1992 |pmid= 1358459 |doi= }}
* {{cite journal | vauthors = Zappavigna V, Renucci A, Izpisúa-Belmonte JC, Urier G, Peschle C, Duboule D | title = HOX4 genes encode transcription factors with potential auto- and cross-regulatory capacities | journal = The EMBO Journal | volume = 10 | issue = 13 | pages = 4177–87 | date = Dec 1991 | pmid = 1756725 | pmc = 453170 | doi =  }}
*{{cite journal | author=Zappavigna V, Renucci A, Izpisúa-Belmonte JC, ''et al.'' |title=HOX4 genes encode transcription factors with potential auto- and cross-regulatory capacities. |journal=EMBO J. |volume=10 |issue= 13 |pages= 4177-87 |year= 1992 |pmid= 1756725 |doi=  }}
* {{cite journal | vauthors = McAlpine PJ, Shows TB | title = Nomenclature for human homeobox genes | journal = Genomics | volume = 7 | issue = 3 | pages = 460 | date = Jul 1990 | pmid = 1973146 | doi = 10.1016/0888-7543(90)90186-X }}
*{{cite journal | author=McAlpine PJ, Shows TB |title=Nomenclature for human homeobox genes. |journal=Genomics |volume=7 |issue= 3 |pages= 460 |year= 1990 |pmid= 1973146 |doi= }}
* {{cite journal | vauthors = Peverali FA, D'Esposito M, Acampora D, Bunone G, Negri M, Faiella A, Stornaiuolo A, Pannese M, Migliaccio E, Simeone A | title = Expression of HOX homeogenes in human neuroblastoma cell culture lines | journal = Differentiation; Research in Biological Diversity | volume = 45 | issue = 1 | pages = 61–9 | date = Oct 1990 | pmid = 1981366 | doi = 10.1111/j.1432-0436.1990.tb00458.x }}
*{{cite journal | author=Peverali FA, D'Esposito M, Acampora D, ''et al.'' |title=Expression of HOX homeogenes in human neuroblastoma cell culture lines. |journal=Differentiation |volume=45 |issue= 1 |pages= 61-9 |year= 1991 |pmid= 1981366 |doi= }}
* {{cite journal | vauthors = Acampora D, D'Esposito M, Faiella A, Pannese M, Migliaccio E, Morelli F, Stornaiuolo A, Nigro V, Simeone A, Boncinelli E | title = The human HOX gene family | journal = Nucleic Acids Research | volume = 17 | issue = 24 | pages = 10385–402 | date = Dec 1989 | pmid = 2574852 | pmc = 335308 | doi = 10.1093/nar/17.24.10385 }}
*{{cite journal | author=Acampora D, D'Esposito M, Faiella A, ''et al.'' |title=The human HOX gene family. |journal=Nucleic Acids Res. |volume=17 |issue= 24 |pages= 10385-402 |year= 1990 |pmid= 2574852 |doi= }}
* {{cite journal | vauthors = Boncinelli E, Acampora D, Pannese M, D'Esposito M, Somma R, Gaudino G, Stornaiuolo A, Cafiero M, Faiella A, Simeone A | title = Organization of human class I homeobox genes | journal = Genome / National Research Council Canada = Génome / Conseil National De Recherches Canada | volume = 31 | issue = 2 | pages = 745–56 | year = 1990 | pmid = 2576652 | doi = 10.1139/g89-133 }}
*{{cite journal | author=Boncinelli E, Acampora D, Pannese M, ''et al.'' |title=Organization of human class I homeobox genes. |journal=Genome |volume=31 |issue= 2 |pages= 745-56 |year= 1990 |pmid= 2576652 |doi= }}
* {{cite journal | vauthors = Guazzi S, Lonigro R, Pintonello L, Boncinelli E, Di Lauro R, Mavilio F | title = The thyroid transcription factor-1 gene is a candidate target for regulation by Hox proteins | journal = The EMBO Journal | volume = 13 | issue = 14 | pages = 3339–47 | date = Jul 1994 | pmid = 7913891 | pmc = 395231 | doi =  }}
*{{cite journal | author=Guazzi S, Lonigro R, Pintonello L, ''et al.'' |title=The thyroid transcription factor-1 gene is a candidate target for regulation by Hox proteins. |journal=EMBO J. |volume=13 |issue= 14 |pages= 3339-47 |year= 1994 |pmid= 7913891 |doi=  }}
* {{cite journal | vauthors = Redline RW, Hudock P, MacFee M, Patterson P | title = Expression of AbdB-type homeobox genes in human tumors | journal = Laboratory Investigation; A Journal of Technical Methods and Pathology | volume = 71 | issue = 5 | pages = 663–70 | date = Nov 1994 | pmid = 7967520 | doi =  }}
*{{cite journal | author=Redline RW, Hudock P, MacFee M, Patterson P |title=Expression of AbdB-type homeobox genes in human tumors. |journal=Lab. Invest. |volume=71 |issue= 5 |pages= 663-70 |year= 1994 |pmid= 7967520 |doi=  }}
* {{cite journal | vauthors = Wulfsberg EA, Mirkinson LJ, Meister SJ | title = Autosomal dominant tetramelic postaxial oligodactyly | journal = American Journal of Medical Genetics | volume = 46 | issue = 5 | pages = 579–83 | date = Jun 1993 | pmid = 8100684 | doi = 10.1002/ajmg.1320460524 }}
*{{cite journal | author=Wulfsberg EA, Mirkinson LJ, Meister SJ |title=Autosomal dominant tetramelic postaxial oligodactyly. |journal=Am. J. Med. Genet. |volume=46 |issue= 5 |pages= 579-83 |year= 1993 |pmid= 8100684 |doi= 10.1002/ajmg.1320460524 }}
* {{cite journal | vauthors = Osborne J, Hu C, Hawley C, Underwood LJ, O'Brien TJ, Baker VV | title = Expression of HOXD10 gene in normal endometrium and endometrial adenocarcinoma | journal = Journal of the Society for Gynecologic Investigation | volume = 5 | issue = 5 | pages = 277–80 | year = 1998 | pmid = 9773404 | doi = 10.1016/S1071-5576(98)00020-3 }}
*{{cite journal | author=Osborne J, Hu C, Hawley C, ''et al.'' |title=Expression of HOXD10 gene in normal endometrium and endometrial adenocarcinoma. |journal=J. Soc. Gynecol. Investig. |volume=5 |issue= 5 |pages= 277-80 |year= 1998 |pmid= 9773404 |doi= }}
* {{cite journal | vauthors = Del Campo M, Jones MC, Veraksa AN, Curry CJ, Jones KL, Mascarello JT, Ali-Kahn-Catts Z, Drumheller T, McGinnis W | title = Monodactylous limbs and abnormal genitalia are associated with hemizygosity for the human 2q31 region that includes the HOXD cluster | journal = American Journal of Human Genetics | volume = 65 | issue = 1 | pages = 104–10 | date = Jul 1999 | pmid = 10364522 | pmc = 1378080 | doi = 10.1086/302467 }}
*{{cite journal | author=Del Campo M, Jones MC, Veraksa AN, ''et al.'' |title=Monodactylous limbs and abnormal genitalia are associated with hemizygosity for the human 2q31 region that includes the HOXD cluster. |journal=Am. J. Hum. Genet. |volume=65 |issue= 1 |pages= 104-10 |year= 1999 |pmid= 10364522 |doi= }}
* {{cite journal | vauthors = Shanmugam K, Green NC, Rambaldi I, Saragovi HU, Featherstone MS | title = PBX and MEIS as non-DNA-binding partners in trimeric complexes with HOX proteins | journal = Molecular and Cellular Biology | volume = 19 | issue = 11 | pages = 7577–88 | date = Nov 1999 | pmid = 10523646 | pmc = 84774 | doi =  }}
*{{cite journal | author=Shanmugam K, Green NC, Rambaldi I, ''et al.'' |title=PBX and MEIS as non-DNA-binding partners in trimeric complexes with HOX proteins. |journal=Mol. Cell. Biol. |volume=19 |issue= 11 |pages= 7577-88 |year= 1999 |pmid= 10523646 |doi=  }}
* {{cite journal | vauthors = Limongi MZ, Pelliccia F, Gaddini L, Rocchi A | title = Clustering of two fragile sites and seven homeobox genes in human chromosome region 2q31-->q32.1 | journal = Cytogenetics and Cell Genetics | volume = 90 | issue = 1-2 | pages = 151–3 | year = 2000 | pmid = 11060466 | doi = 10.1159/000015651 }}
*{{cite journal | author=Limongi MZ, Pelliccia F, Gaddini L, Rocchi A |title=Clustering of two fragile sites and seven homeobox genes in human chromosome region 2q31-->q32.1. |journal=Cytogenet. Cell Genet. |volume=90 |issue= 1-2 |pages= 151-3 |year= 2000 |pmid= 11060466 |doi= }}
* {{cite journal | vauthors = Shen WF, Krishnan K, Lawrence HJ, Largman C | title = The HOX homeodomain proteins block CBP histone acetyltransferase activity | journal = Molecular and Cellular Biology | volume = 21 | issue = 21 | pages = 7509–22 | date = Nov 2001 | pmid = 11585930 | pmc = 99922 | doi = 10.1128/MCB.21.21.7509-7522.2001 }}
*{{cite journal | author=Shen WF, Krishnan K, Lawrence HJ, Largman C |title=The HOX homeodomain proteins block CBP histone acetyltransferase activity. |journal=Mol. Cell. Biol. |volume=21 |issue= 21 |pages= 7509-22 |year= 2001 |pmid= 11585930 |doi= 10.1128/MCB.21.21.7509-7522.2001 }}
* {{cite journal | vauthors = Goodman FR, Majewski F, Collins AL, Scambler PJ | title = A 117-kb microdeletion removing HOXD9-HOXD13 and EVX2 causes synpolydactyly | journal = American Journal of Human Genetics | volume = 70 | issue = 2 | pages = 547–55 | date = Feb 2002 | pmid = 11778160 | pmc = 384929 | doi = 10.1086/338921 }}
*{{cite journal | author=Goodman FR, Majewski F, Collins AL, Scambler PJ |title=A 117-kb microdeletion removing HOXD9-HOXD13 and EVX2 causes synpolydactyly. |journal=Am. J. Hum. Genet. |volume=70 |issue= 2 |pages= 547-55 |year= 2002 |pmid= 11778160 |doi= }}
* {{cite journal | vauthors = Kosaki K, Kosaki R, Suzuki T, Yoshihashi H, Takahashi T, Sasaki K, Tomita M, McGinnis W, Matsuo N | title = Complete mutation analysis panel of the 39 human HOX genes | journal = Teratology | volume = 65 | issue = 2 | pages = 50–62 | date = Feb 2002 | pmid = 11857506 | doi = 10.1002/tera.10009 }}
*{{cite journal | author=Kosaki K, Kosaki R, Suzuki T, ''et al.'' |title=Complete mutation analysis panel of the 39 human HOX genes. |journal=Teratology |volume=65 |issue= 2 |pages= 50-62 |year= 2002 |pmid= 11857506 |doi= 10.1002/tera.10009 }}
}}
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{{Transcription factors}}
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[[Category:Transcription factors]]
[[Category:Transcription factors]]
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{{gene-2-stub}}

Revision as of 14:01, 31 August 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

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n/a

RefSeq (protein)

n/a

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Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

Homeobox D10, also known as HOXD10, is a protein which in humans is encoded by the HOXD10 gene.[1]

Function

This gene is a member of the Abd-B homeobox family and encodes a protein with a homeobox DNA-binding domain. It is included in a cluster of homeobox D genes located on chromosome 2. The encoded nuclear protein functions as a sequence-specific transcription factor that is expressed in the developing limb buds and is involved in differentiation and limb development.

Clinical significance

Mutations in this gene have been associated with Wilms' tumor and congenital vertical talus (also known as "rocker-bottom foot" deformity or congenital convex pes valgus) and/or a foot deformity resembling that seen in Charcot-Marie-Tooth disease.[1][citation needed]

Regulation

The HOXD10 gene is repressed by the microRNAs miR-10a and miR-10b.[2][3][4]

See also

References

  1. 1.0 1.1 "Entrez Gene: HOXD10 homeobox D10".
  2. Lund AH (Feb 2010). "miR-10 in development and cancer". Cell Death and Differentiation. 17 (2): 209–14. doi:10.1038/cdd.2009.58. PMID 19461655.
  3. Ma L, Teruya-Feldstein J, Weinberg RA (Oct 2007). "Tumour invasion and metastasis initiated by microRNA-10b in breast cancer". Nature. 449 (7163): 682–8. doi:10.1038/nature06174. PMID 17898713.
  4. Han L, Witmer PD, Casey E, Valle D, Sukumar S (Aug 2007). "DNA methylation regulates MicroRNA expression". Cancer Biology & Therapy. 6 (8): 1284–8. PMID 17660710.

Further reading

External links

This article incorporates text from the United States National Library of Medicine, which is in the public domain.