]> 2026-08-01T14:21:12+00:00 Cis-regulatory RNA elements 14 en 2007-10-02T16:08:33Z 2454376.1726042 Cis-regulatory RNA elements Internal ribosome entry site 0 en Internal ribosome entry site Riboswitch 0 en Riboswitch Bicoid 3'-UTR regulatory element 0 en Bicoid 3'-UTR regulatory element SECIS element 0 en SECIS element Cobalamin riboswitch 0 en Cobalamin riboswitch Tryptophan operon leader 0 en Tryptophan operon leader Alfalfa mosaic virus coat protein binding (CPB) RNA 0 en Alfalfa mosaic virus coat protein binding (CPB) RNA Alfalfa mosaic virus RNA 1 5' UTR stem-loop 0 en Alfalfa mosaic virus RNA 1 5' UTR stem-loop Alpha operon ribosome binding site 0 en Alpha operon ribosome binding site Antizyme RNA frameshifting stimulation element 0 en Antizyme RNA frameshifting stimulation element APC internal ribosome entry site (IRES) 0 en APC internal ribosome entry site (IRES) Aphthovirus internal ribosome entry site (IRES) 0 en Aphthovirus internal ribosome entry site (IRES) Apolipoprotein B (apoB) 5' UTR cis-regulatory element 0 en Apolipoprotein B (apoB) 5' UTR cis-regulatory element Bag-1 internal ribosome entry site (IRES) 0 en Bag-1 internal ribosome entry site (IRES) Bamboo mosaic potexvirus (BaMV) cis-regulatory element 0 en Bamboo mosaic potexvirus (BaMV) cis-regulatory element Bamboo mosaic virus satellite RNA cis-regulatory element 0 en Bamboo mosaic virus satellite RNA cis-regulatory element Bip internal ribosome entry site (IRES) 0 en Bip internal ribosome entry site (IRES) Bovine leukaemia virus RNA packaging signal 0 en Bovine leukaemia virus RNA packaging signal Cardiovirus cis-acting replication element (CRE) 0 en Cardiovirus cis-acting replication element (CRE) Citrus tristeza virus replication signal 0 en Citrus tristeza virus replication signal C-myc internal ribosome entry site (IRES) 0 en C-myc internal ribosome entry site (IRES) Connexin-32 internal ribosome entry site (IRES) 0 en Connexin-32 internal ribosome entry site (IRES) Connexin-43 internal ribosome entry site (IRES) 0 en Connexin-43 internal ribosome entry site (IRES) Coronavirus 3' stem-loop II-like motif (s2m) 0 en Coronavirus 3' stem-loop II-like motif (s2m) Coronavirus 3' UTR pseudoknot 0 en Coronavirus 3' UTR pseudoknot Coronavirus frameshifting stimulation element 0 en Coronavirus frameshifting stimulation element Coronavirus packaging signal 0 en Coronavirus packaging signal Coronavirus SL-III cis-acting replication element (CRE) 0 en Coronavirus SL-III cis-acting replication element (CRE) Cripavirus internal ribosome entry site (IRES) 0 en Cripavirus internal ribosome entry site (IRES) C-sis internal ribosome entry site (IRES) 0 en C-sis internal ribosome entry site (IRES) DnaX ribosomal frameshifting element 0 en DnaX ribosomal frameshifting element Enteroviral 3' UTR element 0 en Enteroviral 3' UTR element Enterovirus 5' cloverleaf cis-acting replication element 0 en Enterovirus 5' cloverleaf cis-acting replication element Enterovirus cis-acting replication element 0 en Enterovirus cis-acting replication element Epstein-Barr virus nuclear antigen (EBNA) IRES 0 en Epstein-Barr virus nuclear antigen (EBNA) IRES Equine arteritis virus leader TRS hairpin (LTH) 0 en Equine arteritis virus leader TRS hairpin (LTH) FGF-1 internal ribosome entry site (IRES) 0 en FGF-1 internal ribosome entry site (IRES) FGF-2 internal ribosome entry site (IRES) 0 en FGF-2 internal ribosome entry site (IRES) Ctgf/hcs24 CAESAR 0 en Ctgf/hcs24 CAESAR FIE3 (ftz instability element 3') element 0 en FIE3 (ftz instability element 3') element Flavivirus 3' UTR cis-acting replication element (CRE) 0 en Flavivirus 3' UTR cis-acting replication element (CRE) Flavivirus DB element 0 en Flavivirus DB element FMN riboswitch (RFN element) 0 en FMN riboswitch (RFN element) K10 transport/localisation element (TLS) 0 en K10 transport/localisation element (TLS) GAIT element 0 en GAIT element Gammaretrovirus core encapsidation signal 0 en Gammaretrovirus core encapsidation signal G-CSF factor stem-loop destabilising element (SLDE) 0 en G-CSF factor stem-loop destabilising element (SLDE) GlmS glucosamine-6-phosphate activated ribozyme 0 en GlmS glucosamine-6-phosphate activated ribozyme Glycine riboswitch 0 en Glycine riboswitch Group I catalytic intron 0 en Group I catalytic intron Group II catalytic intron 0 en Group II catalytic intron Hairy RNA localisation element (HLE) 0 en Hairy RNA localisation element (HLE) Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES) 0 en Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES) Hepatitis A virus internal ribosome entry site (IRES) 0 en Hepatitis A virus internal ribosome entry site (IRES) Hepatitis C stem-loop IV 0 en Hepatitis C stem-loop IV Hepatitis C virus 3'X element 0 en Hepatitis C virus 3'X element Hepatitis C virus (HCV) cis-acting replication element (CRE) 0 en Hepatitis C virus (HCV) cis-acting replication element (CRE) Hepatitis C virus internal ribosome entry site 0 en Hepatitis C virus internal ribosome entry site Hepatitis C virus stem-loop VII 0 en Hepatitis C virus stem-loop VII Hepatitis E virus cis-reactive element 0 en Hepatitis E virus cis-reactive element Infectious bronchitis virus D-RNA 0 en Infectious bronchitis virus D-RNA Insertion sequence IS1222 ribosomal frameshifting element 0 en Insertion sequence IS1222 ribosomal frameshifting element Insulin-like growth factor II IRES 0 en Insulin-like growth factor II IRES Interferon gamma 5' UTR regulatory element 0 en Interferon gamma 5' UTR regulatory element Iron response element 0 en Iron response element Tymovirus/Pomovirus tRNA-like 3' UTR element 0 en Tymovirus/Pomovirus tRNA-like 3' UTR element Japanese encephalitis virus (JEV) hairpin structure 0 en Japanese encephalitis virus (JEV) hairpin structure Kaposi's sarcoma-associated herpesvirus internal ribosome entry site (IRES) 0 en Kaposi's sarcoma-associated herpesvirus internal ribosome entry site (IRES) Leucine operon leader 0 en Leucine operon leader L-myc internal ribosome entry site (IRES) 0 en L-myc internal ribosome entry site (IRES) Luteovirus cap-independent translation element (BTE) 0 en Luteovirus cap-independent translation element (BTE) YdaO/yuaA leader 0 en YdaO/yuaA leader Lysine riboswitch 0 en Lysine riboswitch Mason-Pfizer monkey virus packaging signal 0 en Mason-Pfizer monkey virus packaging signal Mnt IRES 0 en Mnt IRES Nanos 3' UTR translation control element 0 en Nanos 3' UTR translation control element N-myc internal ribosome entry site (IRES) 0 en N-myc internal ribosome entry site (IRES) P27 cis-regulatory element 0 en P27 cis-regulatory element Pestivirus internal ribosome entry site (IRES) 0 en Pestivirus internal ribosome entry site (IRES) Picornavirus internal ribosome entry site (IRES) 0 en Picornavirus internal ribosome entry site (IRES) Pospiviroid RY motif stem loop 0 en Pospiviroid RY motif stem loop Potassium channel RNA editing signal 0 en Potassium channel RNA editing signal Potato virus X cis-acting regulatory element 0 en Potato virus X cis-acting regulatory element Poxvirus AX element late mRNA cis-regulatory element 0 en Poxvirus AX element late mRNA cis-regulatory element PreQ1 riboswitch 0 en PreQ1 riboswitch PrfA thermoregulator UTR 0 en PrfA thermoregulator UTR Prion pseudoknot 0 en Prion pseudoknot Purine riboswitch 0 en Purine riboswitch PyrR binding site 0 en PyrR binding site R2 RNA element 0 en R2 RNA element RbcL 5' UTR RNA stabilising element 0 en RbcL 5' UTR RNA stabilising element Renin stability regulatory element (REN-SRE) 0 en Renin stability regulatory element (REN-SRE) Repression of heat shock gene expression (ROSE) element 0 en Repression of heat shock gene expression (ROSE) element Retroviral Psi packaging element 0 en Retroviral Psi packaging element Retrovirus direct repeat 1 (dr1) 0 en Retrovirus direct repeat 1 (dr1) Ribosomal protein L10 leader 0 en Ribosomal protein L10 leader Ribosomal protein L19 leader 0 en Ribosomal protein L19 leader Ribosomal protein L20 leader 0 en Ribosomal protein L20 leader Ribosomal protein L21 leader 0 en Ribosomal protein L21 leader Ribosomal S15 leader 0 en Ribosomal S15 leader RNase E 5' UTR element 0 en RNase E 5' UTR element RncO 0 en RncO Rotavirus cis-acting replication element (CRE) 0 en Rotavirus cis-acting replication element (CRE) Rous sarcoma virus (RSV) primer binding site (PBS) 0 en Rous sarcoma virus (RSV) primer binding site (PBS) RtT RNA 0 en RtT RNA Rubella virus 3' cis-acting element 0 en Rubella virus 3' cis-acting element SAM riboswitch (alpha-proteobacteria) 0 en SAM riboswitch (alpha-proteobacteria) SAM riboswitch (S box leader) 0 en SAM riboswitch (S box leader) S-element 0 en S-element SerC leader 0 en SerC leader Simian virus 40 late polyadenylation signal (SVLPA) 0 en Simian virus 40 late polyadenylation signal (SVLPA) HIF-1 alpha IRES 0 en HIF-1 alpha IRES Histidine operon leader 0 en Histidine operon leader Histone 3' UTR stem-loop 0 en Histone 3' UTR stem-loop HIV gag stem loop 3 (GSL3) 0 en HIV gag stem loop 3 (GSL3) HIV primer binding site (PBS) 0 en HIV primer binding site (PBS) HIV Rev response element 0 en HIV Rev response element HIV Ribosomal frameshift signal 0 en HIV Ribosomal frameshift signal Hsp90 cis-regulatory element 0 en Hsp90 cis-regulatory element Human parechovirus 1 (HPeV1) cis regulatory element (CRE) 0 en Human parechovirus 1 (HPeV1) cis regulatory element (CRE) Human rhinovirus internal cis-acting regulatory element (CRE) 0 en Human rhinovirus internal cis-acting regulatory element (CRE) SpeF leader 0 en SpeF leader Spi-1 (PU.1) 5' UTR regulatory element 0 en Spi-1 (PU.1) 5' UTR regulatory element T-box leader 0 en T-box leader Threonine operon leader 0 en Threonine operon leader Tobamovirus internal ribosome entry site (IRES) 0 en Tobamovirus internal ribosome entry site (IRES) Togavirus 5' plus strand cis-regulatory element 0 en Togavirus 5' plus strand cis-regulatory element Tombusvirus 3' UTR region IV 0 en Tombusvirus 3' UTR region IV Tombusvirus 5' UTR 0 en Tombusvirus 5' UTR Tombus virus defective interfering (DI) RNA region 3 0 en Tombus virus defective interfering (DI) RNA region 3 Tombusvirus internal replication element (IRE) 0 en Tombusvirus internal replication element (IRE) TPP riboswitch (THI element) 0 en TPP riboswitch (THI element) TraJ 5' UTR 0 en TraJ 5' UTR Trans-activation response element (TAR) 0 en Trans-activation response element (TAR) TrkB IRES 0 en TrkB IRES Turnip crinkle virus (TCV) core promoter hairpin (Pr) 0 en Turnip crinkle virus (TCV) core promoter hairpin (Pr) Turnip crinkle virus (TCV) repressor of minus strand synthesis H5 0 en Turnip crinkle virus (TCV) repressor of minus strand synthesis H5 U1A polyadenylation inhibition element (PIE) 0 en U1A polyadenylation inhibition element (PIE) UnaL2 LINE 3' element 0 en UnaL2 LINE 3' element UPSK RNA 0 en UPSK RNA Vascular endothelial growth factor (VEGF) IRES A 0 en Vascular endothelial growth factor (VEGF) IRES A Vimentin 3' UTR protein-binding region 0 en Vimentin 3' UTR protein-binding region Voltage-gated potassium-channel Kv1.4 IRES 0 en Voltage-gated potassium-channel Kv1.4 IRES YbhL leader 0 en YbhL leader YkkC-yxkD leader 0 en YkkC-yxkD leader YkoK leader 0 en YkoK leader YlbH leader 0 en YlbH leader YybP-ykoY leader 0 en YybP-ykoY leader Ribosomal protein L13 leader 0 en Ribosomal protein L13 leader GJA1 0 en GJA1 GJB1 0 en GJB1 SMK box riboswitch 0 en SMK box riboswitch Gurken localisation signal 0 en Gurken localisation signal Hepatitis C alternative reading frame stem-loop 0 en Hepatitis C alternative reading frame stem-loop Flavivirus capsid hairpin cHP 0 en Flavivirus capsid hairpin cHP Primer binding site 0 en Primer binding site G-CSF factor stem-loop destabilising element 0 en G-CSF factor stem-loop destabilising element Riboswitch 14 en Riboswitch APC internal ribosome entry site (IRES) 0 en APC internal ribosome entry site (IRES) Alfalfa mosaic virus RNA 1 5' UTR stem-loop 0 en Alfalfa mosaic virus RNA 1 5' UTR stem-loop Alfalfa mosaic virus coat protein binding (CPB) RNA 0 en Alfalfa mosaic virus coat protein binding (CPB) RNA Alpha operon ribosome binding site 0 en Alpha operon ribosome binding site Antizyme RNA frameshifting stimulation element 0 en Antizyme RNA frameshifting stimulation element Aphthovirus internal ribosome entry site (IRES) 0 en Aphthovirus internal ribosome entry site (IRES) Apolipoprotein B (apoB) 5' UTR cis-regulatory element 0 en Apolipoprotein B (apoB) 5' UTR cis-regulatory element Bag-1 internal ribosome entry site (IRES) 0 en Bag-1 internal ribosome entry site (IRES) Bamboo mosaic potexvirus (BaMV) cis-regulatory element 0 en Bamboo mosaic potexvirus (BaMV) cis-regulatory element Bamboo mosaic virus satellite RNA cis-regulatory element 0 en Bamboo mosaic virus satellite RNA cis-regulatory element Bicoid 3'-UTR regulatory element 0 en Bicoid 3'-UTR regulatory element Bip internal ribosome entry site (IRES) 0 en Bip internal ribosome entry site (IRES) Bovine leukaemia virus RNA packaging signal 0 en Bovine leukaemia virus RNA packaging signal C-myc internal ribosome entry site (IRES) 0 en C-myc internal ribosome entry site (IRES) C-sis internal ribosome entry site (IRES) 0 en C-sis internal ribosome entry site (IRES) Cardiovirus cis-acting replication element (CRE) 0 en Cardiovirus cis-acting replication element (CRE) Citrus tristeza virus replication signal 0 en Citrus tristeza virus replication signal Cobalamin riboswitch 0 en Cobalamin riboswitch Connexin-32 internal ribosome entry site (IRES) 0 en Connexin-32 internal ribosome entry site (IRES) Connexin-43 internal ribosome entry site (IRES) 0 en Connexin-43 internal ribosome entry site (IRES) Coronavirus 3' UTR pseudoknot 0 en Coronavirus 3' UTR pseudoknot Coronavirus 3' stem-loop II-like motif (s2m) 0 en Coronavirus 3' stem-loop II-like motif (s2m) Coronavirus SL-III cis-acting replication element (CRE) 0 en Coronavirus SL-III cis-acting replication element (CRE) Coronavirus frameshifting stimulation element 0 en Coronavirus frameshifting stimulation element Coronavirus packaging signal 0 en Coronavirus packaging signal Cripavirus internal ribosome entry site (IRES) 0 en Cripavirus internal ribosome entry site (IRES) Ctgf/hcs24 CAESAR 0 en Ctgf/hcs24 CAESAR DnaX ribosomal frameshifting element 0 en DnaX ribosomal frameshifting element Enteroviral 3' UTR element 0 en Enteroviral 3' UTR element Enterovirus 5' cloverleaf cis-acting replication element 0 en Enterovirus 5' cloverleaf cis-acting replication element Enterovirus cis-acting replication element 0 en Enterovirus cis-acting replication element Epstein-Barr virus nuclear antigen (EBNA) IRES 0 en Epstein-Barr virus nuclear antigen (EBNA) IRES Equine arteritis virus leader TRS hairpin (LTH) 0 en Equine arteritis virus leader TRS hairpin (LTH) FGF-1 internal ribosome entry site (IRES) 0 en FGF-1 internal ribosome entry site (IRES) FGF-2 internal ribosome entry site (IRES) 0 en FGF-2 internal ribosome entry site (IRES) FIE3 (ftz instability element 3') element 0 en FIE3 (ftz instability element 3') element FMN riboswitch (RFN element) 0 en FMN riboswitch (RFN element) Flavivirus 3' UTR cis-acting replication element (CRE) 0 en Flavivirus 3' UTR cis-acting replication element (CRE) Flavivirus DB element 0 en Flavivirus DB element Flavivirus capsid hairpin cHP 0 en Flavivirus capsid hairpin cHP G-CSF factor stem-loop destabilising element 0 en G-CSF factor stem-loop destabilising element G-CSF factor stem-loop destabilising element (SLDE) 0 en G-CSF factor stem-loop destabilising element (SLDE) GAIT element 0 en GAIT element GJA1 0 en GJA1 GJB1 0 en GJB1 Gammaretrovirus core encapsidation signal 0 en Gammaretrovirus core encapsidation signal GlmS glucosamine-6-phosphate activated ribozyme 0 en GlmS glucosamine-6-phosphate activated ribozyme Glycine riboswitch 0 en Glycine riboswitch Group I catalytic intron 0 en Group I catalytic intron Group II catalytic intron 0 en Group II catalytic intron Gurken localisation signal 0 en Gurken localisation signal HIF-1 alpha IRES 0 en HIF-1 alpha IRES HIV Rev response element 0 en HIV Rev response element HIV Ribosomal frameshift signal 0 en HIV Ribosomal frameshift signal HIV gag stem loop 3 (GSL3) 0 en HIV gag stem loop 3 (GSL3) HIV primer binding site (PBS) 0 en HIV primer binding site (PBS) Hairy RNA localisation element (HLE) 0 en Hairy RNA localisation element (HLE) Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES) 0 en Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES) Hepatitis A virus internal ribosome entry site (IRES) 0 en Hepatitis A virus internal ribosome entry site (IRES) Hepatitis C alternative reading frame stem-loop 0 en Hepatitis C alternative reading frame stem-loop Hepatitis C stem-loop IV 0 en Hepatitis C stem-loop IV Hepatitis C virus (HCV) cis-acting replication element (CRE) 0 en Hepatitis C virus (HCV) cis-acting replication element (CRE) Hepatitis C virus 3'X element 0 en Hepatitis C virus 3'X element Hepatitis C virus internal ribosome entry site 0 en Hepatitis C virus internal ribosome entry site Hepatitis C virus stem-loop VII 0 en Hepatitis C virus stem-loop VII Hepatitis E virus cis-reactive element 0 en Hepatitis E virus cis-reactive element Histidine operon leader 0 en Histidine operon leader Histone 3' UTR stem-loop 0 en Histone 3' UTR stem-loop Hsp90 cis-regulatory element 0 en Hsp90 cis-regulatory element Human parechovirus 1 (HPeV1) cis regulatory element (CRE) 0 en Human parechovirus 1 (HPeV1) cis regulatory element (CRE) Human rhinovirus internal cis-acting regulatory element (CRE) 0 en Human rhinovirus internal cis-acting regulatory element (CRE) Infectious bronchitis virus D-RNA 0 en Infectious bronchitis virus D-RNA Insertion sequence IS1222 ribosomal frameshifting element 0 en Insertion sequence IS1222 ribosomal frameshifting element Insulin-like growth factor II IRES 0 en Insulin-like growth factor II IRES Interferon gamma 5' UTR regulatory element 0 en Interferon gamma 5' UTR regulatory element Internal ribosome entry site 0 en Internal ribosome entry site Iron response element 0 en Iron response element Japanese encephalitis virus (JEV) hairpin structure 0 en Japanese encephalitis virus (JEV) hairpin structure K10 transport/localisation element (TLS) 0 en K10 transport/localisation element (TLS) Kaposi's sarcoma-associated herpesvirus internal ribosome entry site (IRES) 0 en Kaposi's sarcoma-associated herpesvirus internal ribosome entry site (IRES) L-myc internal ribosome entry site (IRES) 0 en L-myc internal ribosome entry site (IRES) Leucine operon leader 0 en Leucine operon leader Luteovirus cap-independent translation element (BTE) 0 en Luteovirus cap-independent translation element (BTE) Lysine riboswitch 0 en Lysine riboswitch Mason-Pfizer monkey virus packaging signal 0 en Mason-Pfizer monkey virus packaging signal Mnt IRES 0 en Mnt IRES N-myc internal ribosome entry site (IRES) 0 en N-myc internal ribosome entry site (IRES) Nanos 3' UTR translation control element 0 en Nanos 3' UTR translation control element P27 cis-regulatory element 0 en P27 cis-regulatory element Pestivirus internal ribosome entry site (IRES) 0 en Pestivirus internal ribosome entry site (IRES) Picornavirus internal ribosome entry site (IRES) 0 en Picornavirus internal ribosome entry site (IRES) Pospiviroid RY motif stem loop 0 en Pospiviroid RY motif stem loop Potassium channel RNA editing signal 0 en Potassium channel RNA editing signal Potato virus X cis-acting regulatory element 0 en Potato virus X cis-acting regulatory element Poxvirus AX element late mRNA cis-regulatory element 0 en Poxvirus AX element late mRNA cis-regulatory element PreQ1 riboswitch 0 en PreQ1 riboswitch PrfA thermoregulator UTR 0 en PrfA thermoregulator UTR Primer binding site 0 en Primer binding site Prion pseudoknot 0 en Prion pseudoknot Purine riboswitch 0 en Purine riboswitch INST 102 en INST Subcategory of 102 en Subcategory of