Sandbox Pathogen-Based Infections

Pathogens Bacterial Infections Gram Positive Enterococci Enterococcus faecalis Enterococcus faecium Staphylococci Staphylococcus aureus, MRSA Staphylococcus aureus, MSSA Staphylococcus, Coagulase-negative species Staphylococcus epidermidis Staphylococcus haemolyticus Staphylococcus lugdunensis Staphylococcus saprophyticus Streptococci Streptococcus anginosus group Streptococcus pneumoniae Streptobacillus moniliformis Streptococcus pyogenes Streptococcus agalactiae Gram-positive bacilli Actinomyces israelii Arcanobacterium (C.) haemolyticum Bacillus species Bacillus anthracis Bacillus cereus, Bacillus subtilis Clostridium species Clostridium difficile Clostridium perfringens Clostridium tetani Corynebacterium species Corynebacterium diphtheriae Corynebacterium jeikeium Corynebacterium urealyticum Erysipelothrix rhusiopathiae Gastroenteritis, Listeria monocytogenes Lactobacillus sp. Leuconostoc Nocardia sp. Propionibacterium acnes Rhodococcus equi Rickettsia Coxiella burnetii, Q Fever Ehrlichia sp., Anaplasma Gram-Negative Cocci & Coccobacilli Aggregatibacter aphrophilus Brucella sp. Haemophilus ducreyi Haemophilus influenzae Neisseria gonorrhoeae Neisseria meningitidis Pasteurella multocida Eikenella corrodens Bordetella pertussis Moraxella catarrhalis Spirochetes Leptospira spp. Borrelia sp. Treponema pallidum Gram-Negative Bacilli Enterics Aeromonas hydrophila Citrobacter koseri (diversus), Citrobacter freundii Enterobacter cloacae, Enterobacter aerogenes Escherichia coli Klebsiella rhinoscleromatis, ozaenae Klebsiella pneumoniae Morganella morganii Morganella sp., Providencia sp. Proteus species Proteus vulgaris Providencia sp. Salmonella sp. Serratia marcescens Shigella sp. Campylobacter Campylobacter fetus Campylobacter jejuni Bartonella sp. Non-fermenting Gram-negative bacilli Acinetobacter baumannii Achromobacter xylosoxidans Alcaligenes xylosoxidans Bordetella pertussis Burkholderia cepacia Burkholderia pseudomallei (Pseudomonas pseudomallei) Stenotrophomonas maltophilia Elizabethkingia (Chryseobacterium) meningoseptica Moraxella catarrhalis Pseudomonas aeruginosa Capnocytophaga sp. Francisella tularensis Helicobacter pylori Legionella sp. Plesiomonas shigelloides Vibrio spp. Vibrio cholerae Vibrio parahaemolyticus Vibrio vulnificus, V. alginolyticus, V. damsela Atypical Organisms Chlamydophila pneumoniae Chlamydophila psittaci Coxiella burnetii Legionella sp. Pneumonia, Mycoplasma Misc. Organisms Gardnerella vaginalis Eikenella corrodens Bordetella pertussis Bartonella sp. Stenotrophomonas: maltophilia Acinetobacter baumannii Anaerobic Gram-Negative Bacilli Bacteroides fragilis Bacteroides sp., Overview Fusobacterium necrophorum Fungal Infections Aspergillosis Allergic Bronchopulmonary (ABPA) Allergic Fungal Sinusitis Aspergilloma Chronic Cavitary Pulmonary Aspergillosis, Invasive Transplants, Aspergillus Prevention Blastomycosis Blastomycosis, Overview Cutaneous, Pulmonary or Extrapulmonary CNS, Meningitis See also, Lobomycosis Paracoccidioidomycosis Candidiasis Candidemia, Disseminated Chronic, Disseminated CNS, Meningitis Cutaneous Endocarditis Endophthalmitis, Candida Esophageal Neonatal Oropharyngeal Osteomyelitis Transplants, Prevention Urinary Tract Infection Vulvovaginitis Chromoblastomycosis Coccidioidomycosis Disseminated Meningitis Prophylaxis Pulmonary Cryptococcosis Pulmonary, Non-Meningeal Meningitis, Immunocompetent Meningitis, HIV/AIDS Dermatophytosis Onychomycosis Tinea capitis Tinea corporis, Tinea pedis, Tinea cruris Tinea versicolor Exserohilum rostratum Fusariosis Histoplasmosis CNS, Meningitis Mediastinal Pericarditis Progressive Disseminated Prophylaxis Pulmonary Mucormycosis Paracoccidioidomycosis Lobomycosis Penicilliosis Phaeohyphomycosis Scedosporiosis Sporotrichosis Pneumocystis jiroveci (carinii)(PCP) Pneumonia, Pneumocystis (PCP) Transplants, Prevention Mycobacterial Infections M. tuberculosis Infection Mycobacterium tuberculosis, Overview Treatment Algorithm Diagnostic testing (TST and Newer Tests) Exposure, Negative TST Latent Infection, High Risk Latent infection, Positive TST Pulmonary Susceptible Organism Mono-drug-resistant Multi-drug-resistant (MDR) Extensively-drug-resistant (XDR) Extrapulmonary Bone Arthritis Meningitis Pregnancy Considerations Treatment Failure, Relapse HIV/AIDS Atypical Mycobacterial Infections Atypical Mycobacteria M. abscessus M. bovis Bacillus Calmette-Guerin M. avium-intracellulare complex (MAC, MAI) Immunocompetent Immunocompromised M. celatum M. chelonae M. foruitum M. haemophilum M. genavense M. gordonae M. kansasii M. marinum M. scrofulaceum M. simiae M. ulcerans (Buruli Ulcer) M. xenopi M. leprae (Leprosy) Parasitic Infections Antiparasitic Drugs, Sources Eosinophilia Intestinal Protozoa Balantidium coli Blastocystis hominis Cryptosporidium parvum, hominis Cyclospora cayetanensis Dientamoeba fragilis Entamoeba histolytica (Amebiasis) Giardia lamblia, Giardiasis Cystoisospora belli (Isospora belli) Microsporidiosis Non-pathogenic intestinal protozoa Extraintestinal Protozoa Amebic meningoencephalitis Amebic meningoencephalitis Acanthaamoeba sp. Balamuthia mandrillaris Naegleria fowleri Sappinia diploidea Babesia microti (Babesiosis) Leishmaniasis Malaria Malaria, Overview Chloroquine-sensitive, Prophylaxis Chloroquine-resistant, Prophylaxis Self-initiated Treatment Severe Uncomplicated, Non-P. falciparum Uncomplicated, P. falciparum Toxoplasma gondii Immunocompetent HIV/AIDS Transplants, Prevention Trichomonas vaginalis Trypanosomiasis American East African West African Transplants, Prevention Intestinal Nematodes (Roundworms) Anisakis simplex, Anisakiasis Ascaris lumbricoides, Ascariasis Capillaria philippinensis, Capillariasis Enterobius vermicularis (Pinworm) Gongylonemiasis Hookworm, Necator americanus and Ancylostoma duodenale Strongyloides stercoralis, Strongyloidiasis Trichostrongylus orientalis Trichuris trichiura, Whipworm Extraintestinal Nematodes (Roundworms) Ancylostoma braziliense, caninum (Cutaneous Larva Migrans) Angiostrongylus cantonensis, Angiostrongyliasis Baylisascariasis, Raccoon ascaris Dracunculus medinensis, Guinea Worm Filariasis Filariasis, Overview Body Cavity (mansonellosis) Cutaneous (Loiasis, onchocerciasis) Dirofilariasis Lymphatic (W. bancrofti, B. malayi) Gnathostoma spinigerum, Eosinophilic Myeloencephalitis Toxocariasis Trichinella spiralis, Trichinosis Trematodes (Flukes) Clonorchis sinensis, liver fluke Dicrocoelium dendriticum Fasciola buski, intestinal fluke Fasciola hepatica, sheep liver fluke Heterophyes heterophyes (intestinal fluke); Metagonimus yokogawai (intestinal fluke) Paragonimus westermani, lung fluke Schistosomiasis Cestodes (Tapeworms) Echinococcus Intestinal tapeworms Neurocysticercosis Sparganosis, Spirometra mansonoides Ectoparasites Body Lice Head Lice Pubic Lice Scabies Myiasis Viral Infections Adenovirus Coronavirus (SARS) Cytomegalovirus Cytomegalovirus, Gastrointestinal Disease Cytomegalovirus in Transplant Recipients Cytomegalovirus Neurologic Disease Pneumonia, Cytomegalovirus Pregnancy Prevention Solid Organ Stem Cell Retinitis, Cytomegalovirus Enterovirus Erythema Multiforme Hemorrhagic Fever Viruses Crimean-Congo Ebola, Marburg Hantavirus Pulmonary Syndrome Renal Syndromes Dengue West Nile Virus Yellow Fever Virus Chikungunya Fever Hepatitis Hepatitis Overview HAV, Acute, Treatment Immunization (HAV, HBV) Hepatitis B (HBV) HBV Clinical Presentation HBV Epidemiology HBV, Exposure Management HBV Natural History HBV, Prophylaxis, Transplants HBV Treatment Transplants, Hepatitis B Prevention Hepatitis C (HCV) HCV Epidemiology HCV Diagnosis HCV Natural History HCV Clinical Presentation and Staging HCV Treatment Setting HCV Treatment HCV Drugs In Development HCV, Exposure Management Herpesviruses Cytomegalovirus Cytomegalovirus, Gastrointestinal Disease Cytomegalovirus in Transplant Recipients Cytomegalovirus Neurologic Disease Pneumonia, Cytomegalovirus Pregnancy CMV Prevention Solid Organ Stem Cell Retinitis, Cytomegalovirus Epstein-Barr Virus (Mono) HHV-6, HHV-7, HHV-8 Herpes simplex virus (HSV Types 1, 2) Bell's Palsy Encephalitis Genital Gingivostomatitis Oral Labial Stomatitis Herpes simiae Varicella-Zoster virus (VZV), Chickenpox Herpes-Zoster, Shingles Transplants and Hematological Malignancy, HSV and VZV Prevention HIV, AIDS Antiretroviral Therapy, Overview Antiretrovrial Therapy, Treatment Naive Adult HIV/Hepatitis Exposure Management HIV Exposure, Hepatitis Exposure, Overview Occupational Non-occupational Human Metapneumovirus (HMPV) Human Papillomavirus (HPV) Influenza Influenza Virus, Overview Influenza A Seasonal A/H1N1 Swine A/H1N1 A/H3N2 Influenza B Influenza, Avian H5N1 Influenza, Prevention Measles Middle East Respiratory Syndrome, MERS Monkey Pox Monkey Pox See Also, Gastroenteritis, Empiric Therapy Nipah Virus Orf, Ecthyma contagiosum Paramyxovirus Parvo B19 Virus Papovavirus, Polyomavirus Progressive Multifocal Leukoencephalopathy (PML) BK Virus Induced Neuropathy Progressive multifocal leukoencephalopathy, JC virus Rabies Rabies, Post-Exposure Prophylaxis See Also, Bites Respiratory Syncytial Virus Rhinovirus Rotavirus SFTSV (Severe Fever Thrombocytopenia Syndrome Virus) Smallpox HIV/AIDS Therapy HIV/AIDS Overview HIV Risk Assessment Recommendations for HIV Testing Natural History of HIV HIV Clinical Staging, Classification HIV Infection in Children, Overview HIV in the Fetus and Newborn, Overview HIV in Women and Pregnancy, Overview Patient Evaluation & Prevention Pre-Exposure Prophylaxis (PrEP) Initial Evaluation of the HIV-Infected Adult Initial Evaluation of HIV-Infected Child HIV Exposure, Hepatitis Exposure, Overview HIV, Occupational Exposure HIV, Non-occupational Exposure Immunization, Routine, HIV+ Adults Immunization, Travel, HIV+ Adults Immunization, Routine, HIV+ Child HIV and Travel Considerations Diagnostic & Resistance Testing HIV Diagnosis & Testing, Overview Rapid HIV Antibody Screening Testing HIV Enzyme Immunoassay Antibody Tests HIV Combined Antigen Antibody Tests & Home Tests Detection & Quantitation of HIV-1 RNA, Viral Load CD4 & CD8 T-Lymphocyte Counts HTLV Diagnosis & Testing ARV Drug Resistance Testing, Overview Genotype Resistance Testing Phenotype Resistance Testing Diagnosis of HIV-2 Infection Diagnosis of Primary/Acute HIV Infection Genotype Resistance Mutations: NRTIs Genotype Resistance Mutations: NNRTI Genotype Resistance Mutations: PI Genotype Resistance Mutations: All Other Treatment: Antiretroviral Therapy, ART Antiretroviral Therapy (ART), Overview Antiretroviral Therapy (ART), Adult ARV Regimens Not Recommended, Adult ART Treatment Failure, Adult Starting ART in Children Recommended ART Regimens in Children Response to ART in Children ART in Pregnancy ARV Drugs: Adverse Effects By Clinical Presentation Primary (Acute, Early) HIV Infection HIV-2 Antiretroviral Agents Antiretroviral Drugs, Overview Nucleoside, Nucleotide Agents (NRTIs) Abacavir Didanosine Emtricitabine Lamivudine Stavudine Tenofovir disoproxil fumarate Zidovudine Non-nucleoside Agents (NNRTIs) Delavirdine Efavirenz Etravirine Nevirapine Rilpivirine NRTI/NNRTI Combinations Atripla Combivir Complera, Eviplera Epzicom Trizivir Truvada Protease Inhibitors (PIs) Atazanavir Darunavir Fosamprenavir Indinavir Lopinavir-Ritonavir Nelfinavir Ritonavir Saquinavir Tipranavir Fusion Inhibitor Enfuvirtide CCR-5 Antagonist Maraviroc Strand Transfer Integrase Inhibitor (STII) Raltegravir Elvitegravir (Stribild) ARV Drug Cost Comparison Antiretroviral Drug-Drug Interactions Overlapping Toxicities: ARV Drugs & Other Drugs HIV ARV Drugs in Development HIV-related Syndromes Editorial Note to Readers Immune Reconstitution Inflammatory Syndrome, IRIS ART: Effect on Specific OIs Clinical Syndromes, OIs in HIV+ Children HIV/AIDS-associated Malignancies Stimulating Erythropoiesis and Granulocyte Production