VAPA: Difference between revisions

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{{Infobox_gene}}
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'''Vesicle-associated membrane protein-associated protein A''' is a [[protein]] that in humans is encoded by the ''VAPA'' [[gene]].<ref name="pmid9920726">{{cite journal |vauthors=Nishimura Y, Hayashi M, Inada H, Tanaka T | title = Molecular cloning and characterization of mammalian homologues of vesicle-associated membrane protein-associated (VAMP-associated) proteins | journal = Biochem Biophys Res Commun | volume = 254 | issue = 1 | pages = 21–6 |date=Feb 1999 | pmid = 9920726 | pmc =  | doi = 10.1006/bbrc.1998.9876 }}</ref><ref name="pmid9657962">{{cite journal |vauthors=Weir ML, Klip A, Trimble WS | title = Identification of a human homologue of the vesicle-associated membrane protein (VAMP)-associated protein of 33 kDa (VAP-33): a broadly expressed protein that binds to VAMP | journal = Biochem J | volume = 333 | issue =  2| pages = 247–51 |date=Sep 1998 | pmid = 9657962 | pmc = 1219579 | doi =  10.1042/bj3330247}}</ref><ref name="entrez">{{cite web | title = Entrez Gene: VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=9218| accessdate = }}</ref> Together with [[VAPB]] it forms the [[VAP protein family]].
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{{GNF_Protein_box
| image = PBB_Protein_VAPA_image.jpg
| image_source = [[Protein_Data_Bank|PDB]] rendering based on 1z9l.
| PDB = {{PDB2|1z9l}}, {{PDB2|1z9o}}, {{PDB2|2cri}}
| Name = VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa
| HGNCid = 12648
| Symbol = VAPA
| AltSymbols =; MGC3745; VAP-33; VAP-A; VAP33; hVAP-33
| OMIM = 605703
| ECnumber =
| Homologene = 37824
| MGIid = 1353561
  | GeneAtlas_image1 = PBB_GE_VAPA_208780_x_at_tn.png
| Function = {{GNF_GO|id=GO:0004871 |text = signal transducer activity}} {{GNF_GO|id=GO:0005198 |text = structural molecule activity}}
| Component = {{GNF_GO|id=GO:0016020 |text = membrane}} {{GNF_GO|id=GO:0016021 |text = integral to membrane}}
| Process = {{GNF_GO|id=GO:0006461 |text = protein complex assembly}} {{GNF_GO|id=GO:0006887 |text = exocytosis}} {{GNF_GO|id=GO:0006944 |text = membrane fusion}} {{GNF_GO|id=GO:0043123 |text = positive regulation of I-kappaB kinase/NF-kappaB cascade}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 9218
    | Hs_Ensembl = ENSG00000101558
    | Hs_RefseqProtein = NP_003565
    | Hs_RefseqmRNA = NM_003574
    | Hs_GenLoc_db =   
    | Hs_GenLoc_chr = 18
    | Hs_GenLoc_start = 9903984
    | Hs_GenLoc_end = 9949571
    | Hs_Uniprot = Q9P0L0
    | Mm_EntrezGene = 30960
    | Mm_Ensembl = ENSMUSG00000024091
    | Mm_RefseqmRNA = NM_013933
    | Mm_RefseqProtein = NP_038961
    | Mm_GenLoc_db =   
    | Mm_GenLoc_chr = 17
    | Mm_GenLoc_start = 65479596
    | Mm_GenLoc_end = 65513084
    | Mm_Uniprot = Q9WV55
  }}
}}
'''VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa''', also known as '''VAPA''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=9218| accessdate = }}</ref>


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| section_title =  
| section_title =  
| summary_text = The protein encoded by this gene is a type IV membrane protein. It is present in the plasma membrane and intracellular vesicles. It may also be associated with the cytoskeleton. This protein may function in vesicle trafficking, membrane fusion, protein complex assembly and cell motility. Alternative splicing occurs at this locus and two transcript variants encoding distinct isoforms have been identified.<ref name="entrez">{{cite web | title = Entrez Gene: VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=9218| accessdate = }}</ref>
| summary_text = The protein encoded by this gene is a type IV membrane protein. It is present in the plasma membrane and intracellular vesicles. It may also be associated with the cytoskeleton. This protein may function in vesicle trafficking, membrane fusion, protein complex assembly and cell motility. Alternative splicing occurs at this locus and two transcript variants encoding distinct isoforms have been identified.<ref name="entrez">{{cite web | title = Entrez Gene: VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=9218| accessdate = }}</ref>
}}
}}
==Interactions==
VAPA has been shown to [[Protein-protein interaction|interact]] with [[OSBP]].<ref name=pmid12023275>{{cite journal |last=Wyles |first=Jessica P |authorlink= |author2=McMaster Christopher R |author3=Ridgway Neale D  |date=Aug 2002 |title=Vesicle-associated membrane protein-associated protein-A (VAP-A) interacts with the oxysterol-binding protein to modify export from the endoplasmic reticulum |journal=J. Biol. Chem. |volume=277 |issue=33 |pages=29908–18 |publisher= |location = United States| issn = 0021-9258| pmid = 12023275 |doi = 10.1074/jbc.M201191200 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = }}</ref> This interaction is mediated by the [[FFAT motif]] in [[OSBP]].


==References==
==References==
{{reflist|2}}
{{reflist}}
 
==Further reading==
==Further reading==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading  
{{PBB_Further_reading  
| citations =  
| citations =  
*{{cite journal | author=Weir ML, Klip A, Trimble WS |title=Identification of a human homologue of the vesicle-associated membrane protein (VAMP)-associated protein of 33 kDa (VAP-33): a broadly expressed protein that binds to VAMP. |journal=Biochem. J. |volume=333 ( Pt 2) |issue=  |pages= 247-51 |year= 1998 |pmid= 9657962 |doi=  }}
*{{cite journal   |vauthors=Lapierre LA, Tuma PL, Navarre J, etal |title=VAP-33 localizes to both an intracellular vesicle population and with occludin at the tight junction. |journal=J. Cell Sci. |volume=112 |issue=  21|pages= 3723–32 |year= 1999 |pmid= 10523508 |doi=  }}
*{{cite journal  | author=Nishimura Y, Hayashi M, Inada H, Tanaka T |title=Molecular cloning and characterization of mammalian homologues of vesicle-associated membrane protein-associated (VAMP-associated) proteins. |journal=Biochem. Biophys. Res. Commun. |volume=254 |issue= 1 |pages= 21-6 |year= 1999 |pmid= 9920726 |doi= 10.1006/bbrc.1998.9876 }}
*{{cite journal   |vauthors=Tu H, Gao L, Shi ST, etal |title=Hepatitis C virus RNA polymerase and NS5A complex with a SNARE-like protein. |journal=Virology |volume=263 |issue= 1 |pages= 30–41 |year= 1999 |pmid= 10544080 |doi= 10.1006/viro.1999.9893 }}
*{{cite journal  | author=Lapierre LA, Tuma PL, Navarre J, ''et al.'' |title=VAP-33 localizes to both an intracellular vesicle population and with occludin at the tight junction. |journal=J. Cell. Sci. |volume=112 ( Pt 21) |issue=  |pages= 3723-32 |year= 1999 |pmid= 10523508 |doi=  }}
*{{cite journal  |vauthors=Weir ML, Xie H, Klip A, Trimble WS |title=VAP-A binds promiscuously to both v- and tSNAREs. |journal=Biochem. Biophys. Res. Commun. |volume=286 |issue= 3 |pages= 616–21 |year= 2001 |pmid= 11511104 |doi= 10.1006/bbrc.2001.5437 }}
*{{cite journal | author=Tu H, Gao L, Shi ST, ''et al.'' |title=Hepatitis C virus RNA polymerase and NS5A complex with a SNARE-like protein. |journal=Virology |volume=263 |issue= 1 |pages= 30-41 |year= 1999 |pmid= 10544080 |doi= 10.1006/viro.1999.9893 }}
*{{cite journal  |vauthors=Wyles JP, McMaster CR, Ridgway ND |title=Vesicle-associated membrane protein-associated protein-A (VAP-A) interacts with the oxysterol-binding protein to modify export from the endoplasmic reticulum. |journal=J. Biol. Chem. |volume=277 |issue= 33 |pages= 29908–18 |year= 2002 |pmid= 12023275 |doi= 10.1074/jbc.M201191200 }}
*{{cite journal  | author=Weir ML, Xie H, Klip A, Trimble WS |title=VAP-A binds promiscuously to both v- and tSNAREs. |journal=Biochem. Biophys. Res. Commun. |volume=286 |issue= 3 |pages= 616-21 |year= 2001 |pmid= 11511104 |doi= 10.1006/bbrc.2001.5437 }}
*{{cite journal   |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 }}
*{{cite journal  | author=Wyles JP, McMaster CR, Ridgway ND |title=Vesicle-associated membrane protein-associated protein-A (VAP-A) interacts with the oxysterol-binding protein to modify export from the endoplasmic reticulum. |journal=J. Biol. Chem. |volume=277 |issue= 33 |pages= 29908-18 |year= 2002 |pmid= 12023275 |doi= 10.1074/jbc.M201191200 }}
*{{cite journal   |vauthors=Matsuda A, Suzuki Y, Honda G, etal |title=Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. |journal=Oncogene |volume=22 |issue= 21 |pages= 3307–18 |year= 2003 |pmid= 12761501 |doi= 10.1038/sj.onc.1206406 }}
*{{cite journal | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal   |vauthors=Ota T, Suzuki Y, Nishikawa T, etal |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal | author=Matsuda A, Suzuki Y, Honda G, ''et al.'' |title=Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. |journal=Oncogene |volume=22 |issue= 21 |pages= 3307-18 |year= 2003 |pmid= 12761501 |doi= 10.1038/sj.onc.1206406 }}
*{{cite journal  |vauthors=Gao L, Aizaki H, He JW, Lai MM |title=Interactions between viral nonstructural proteins and host protein hVAP-33 mediate the formation of hepatitis C virus RNA replication complex on lipid raft. |journal=J. Virol. |volume=78 |issue= 7 |pages= 3480–8 |year= 2004 |pmid= 15016871 |doi=10.1128/JVI.78.7.3480-3488.2004  | pmc=371042 }}
*{{cite journal | author=Ota T, Suzuki Y, Nishikawa T, ''et al.'' |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40-5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal  |vauthors=Evans MJ, Rice CM, Goff SP |title=Phosphorylation of hepatitis C virus nonstructural protein 5A modulates its protein interactions and viral RNA replication. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=101 |issue= 35 |pages= 13038–43 |year= 2004 |pmid= 15326295 |doi= 10.1073/pnas.0405152101 | pmc=516513 }}
*{{cite journal  | author=Gao L, Aizaki H, He JW, Lai MM |title=Interactions between viral nonstructural proteins and host protein hVAP-33 mediate the formation of hepatitis C virus RNA replication complex on lipid raft. |journal=J. Virol. |volume=78 |issue= 7 |pages= 3480-8 |year= 2004 |pmid= 15016871 |doi=  }}
*{{cite journal   |vauthors=Suzuki Y, Yamashita R, Shirota M, etal |title=Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. |journal=Genome Res. |volume=14 |issue= 9 |pages= 1711–8 |year= 2004 |pmid= 15342556 |doi= 10.1101/gr.2435604 | pmc=515316 }}
*{{cite journal  | author=Evans MJ, Rice CM, Goff SP |title=Phosphorylation of hepatitis C virus nonstructural protein 5A modulates its protein interactions and viral RNA replication. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=101 |issue= 35 |pages= 13038-43 |year= 2004 |pmid= 15326295 |doi= 10.1073/pnas.0405152101 }}
*{{cite journal   |vauthors=Gerhard DS, Wagner L, Feingold EA, etal |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 | pmc=528928 }}
*{{cite journal | author=Suzuki Y, Yamashita R, Shirota M, ''et al.'' |title=Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. |journal=Genome Res. |volume=14 |issue= 9 |pages= 1711-8 |year= 2004 |pmid= 15342556 |doi= 10.1101/gr.2435604 }}
*{{cite journal   |vauthors=Rual JF, Venkatesan K, Hao T, etal |title=Towards a proteome-scale map of the human protein-protein interaction network. |journal=Nature |volume=437 |issue= 7062 |pages= 1173–8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
*{{cite journal | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
*{{cite journal   |vauthors=Hamamoto I, Nishimura Y, Okamoto T, etal |title=Human VAP-B is involved in hepatitis C virus replication through interaction with NS5A and NS5B. |journal=J. Virol. |volume=79 |issue= 21 |pages= 13473–82 |year= 2005 |pmid= 16227268 |doi= 10.1128/JVI.79.21.13473-13482.2005 | pmc=1262604 }}
*{{cite journal | author=Rual JF, Venkatesan K, Hao T, ''et al.'' |title=Towards a proteome-scale map of the human protein-protein interaction network. |journal=Nature |volume=437 |issue= 7062 |pages= 1173-8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
*{{cite journal  |vauthors=Kawano M, Kumagai K, Nishijima M, Hanada K |title=Efficient trafficking of ceramide from the endoplasmic reticulum to the Golgi apparatus requires a VAMP-associated protein-interacting FFAT motif of CERT. |journal=J. Biol. Chem. |volume=281 |issue= 40 |pages= 30279–88 |year= 2006 |pmid= 16895911 |doi= 10.1074/jbc.M605032200 }}
*{{cite journal | author=Hamamoto I, Nishimura Y, Okamoto T, ''et al.'' |title=Human VAP-B is involved in hepatitis C virus replication through interaction with NS5A and NS5B. |journal=J. Virol. |volume=79 |issue= 21 |pages= 13473-82 |year= 2005 |pmid= 16227268 |doi= 10.1128/JVI.79.21.13473-13482.2005 }}
*{{cite journal  | author=Kawano M, Kumagai K, Nishijima M, Hanada K |title=Efficient trafficking of ceramide from the endoplasmic reticulum to the Golgi apparatus requires a VAMP-associated protein-interacting FFAT motif of CERT. |journal=J. Biol. Chem. |volume=281 |issue= 40 |pages= 30279-88 |year= 2006 |pmid= 16895911 |doi= 10.1074/jbc.M605032200 }}
}}
}}
{{refend}}
{{refend}}
{{PDB Gallery|geneid=9218}}
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Revision as of 22:36, 8 November 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

Vesicle-associated membrane protein-associated protein A is a protein that in humans is encoded by the VAPA gene.[1][2][3] Together with VAPB it forms the VAP protein family.

The protein encoded by this gene is a type IV membrane protein. It is present in the plasma membrane and intracellular vesicles. It may also be associated with the cytoskeleton. This protein may function in vesicle trafficking, membrane fusion, protein complex assembly and cell motility. Alternative splicing occurs at this locus and two transcript variants encoding distinct isoforms have been identified.[3]

Interactions

VAPA has been shown to interact with OSBP.[4] This interaction is mediated by the FFAT motif in OSBP.

References

  1. ↑ Nishimura Y, Hayashi M, Inada H, Tanaka T (Feb 1999). "Molecular cloning and characterization of mammalian homologues of vesicle-associated membrane protein-associated (VAMP-associated) proteins". Biochem Biophys Res Commun. 254 (1): 21–6. doi:10.1006/bbrc.1998.9876. PMID 9920726.
  2. ↑ Weir ML, Klip A, Trimble WS (Sep 1998). "Identification of a human homologue of the vesicle-associated membrane protein (VAMP)-associated protein of 33 kDa (VAP-33): a broadly expressed protein that binds to VAMP". Biochem J. 333 (2): 247–51. doi:10.1042/bj3330247. PMC 1219579. PMID 9657962.
  3. ↑ 3.0 3.1 "Entrez Gene: VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa".
  4. ↑ Wyles, Jessica P; McMaster Christopher R; Ridgway Neale D (Aug 2002). "Vesicle-associated membrane protein-associated protein-A (VAP-A) interacts with the oxysterol-binding protein to modify export from the endoplasmic reticulum". J. Biol. Chem. United States. 277 (33): 29908–18. doi:10.1074/jbc.M201191200. ISSN 0021-9258. PMID 12023275.

Further reading



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