wikidoc - Changes related to "Calcitriol" [en]

AGC box gene transcriptions

2026-04-22T21:50:35Z

GCC box samplings

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	==GCC box samplings==		==GCC box samplings==
			[[AGC box gene transcriptions#GCC box samplings\|GCC box samplings]]

	Copying GCCGCC in "⌘F" yields one between ZSCAN22 and A1BG and two between ZNF497 and A1BG as can be found by the computer programs.		Copying GCCGCC in "⌘F" yields one between ZSCAN22 and A1BG and two between ZNF497 and A1BG as can be found by the computer programs.

GC box gene transcriptions

2026-04-22T07:50:54Z

GC box (Briggs) samplings

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	==GC box (Briggs) samplings==		==GC box (Briggs) samplings==
			[[GC box gene transcriptions#GC box (Briggs) samplings\|GC box (Briggs) samplings]]

	"A GC box [...] consensus sequence is represented as 5'-(G/T)(G/A)GGCG(G/T)(G/A)(G/A)C/T-3' [or 5′-KRGGCGKRRY-3′] (Briggs et al., 1986)."<ref name=Imataka/>		"A GC box [...] consensus sequence is represented as 5'-(G/T)(G/A)GGCG(G/T)(G/A)(G/A)C/T-3' [or 5′-KRGGCGKRRY-3′] (Briggs et al., 1986)."<ref name=Imataka/>

G box gene transcriptions

2026-04-22T06:44:09Z

Oeda samplings

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	==Oeda samplings==		==Oeda samplings==
			[[G box gene transcriptions#Oeda samplings\|Oeda samplings]]

	For the Basic programs (starting with SuccessablesGbox.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), including extending the number of nts from 958 to 4445, the programs are, are looking for, and found:		For the Basic programs (starting with SuccessablesGbox.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), including extending the number of nts from 958 to 4445, the programs are, are looking for, and found:
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	==Song samplings==		==Song samplings==
			[[G box gene transcriptions#Song samplings\|Song samplings]]

	Copying a responsive elements consensus sequence (G/T)CCACGTG(G/T)C and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.		Copying a responsive elements consensus sequence (G/T)CCACGTG(G/T)C and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

ABA-response element gene transcriptions

2026-04-22T04:25:59Z

GATC samplings

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	==GATC samplings==		==GATC samplings==
			[[ABA-response element gene transcriptions#GATC samplings\|GATC samplings]]

	For the Basic programs testing consensus sequence GATC (starting with SuccessablesGATC1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence GATC (starting with SuccessablesGATC1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

GATA gene transcriptions

2026-04-22T03:53:09Z

Staschke Gln3 samplings

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	==GATA samplings==		==GATA samplings==
			[[GATA gene transcriptions#GATA samplings\|GATA samplings]]

	Copying a responsive elements consensus sequence GATA and putting the sequence in "⌘F" finds three between ZNF497 and A1BG or seven between ZSCAN22 and A1BG as can be found by the computer programs.		Copying a responsive elements consensus sequence GATA and putting the sequence in "⌘F" finds three between ZNF497 and A1BG or seven between ZSCAN22 and A1BG as can be found by the computer programs.
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	==Staschke Gln3 samplings==		==Staschke Gln3 samplings==
			[[GATA gene transcriptions#Staschke Gln3 samplings\|Staschke Gln3 samplings]]

	Copying a responsive elements consensus sequence GAT(A/T)A and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.		Copying a responsive elements consensus sequence GAT(A/T)A and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

Γ-interferon activated sequence gene transcriptions

2026-04-21T20:55:01Z

Γ-interferon activated sequence samplings

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	==γ-interferon activated sequences samplings==		==γ-interferon activated sequences samplings==
			[[Γ-interferon activated sequence gene transcriptions#γ-interferon activated sequences samplings\|γ-interferon activated sequences samplings]]

	Looking for TTCCTAGAA.		Looking for TTCCTAGAA.
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	==Γ-interferon activated sequence samplings==		==Γ-interferon activated sequence samplings==
			[[Γ-interferon activated sequence gene transcriptions#Γ-interferon activated sequence samplings\|Γ-interferon activated sequence samplings]]

	{\| class="wikitable sortable"		{\| class="wikitable sortable"
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	The occurrences of real GAS UTRs and negative distals overlap the high end of the randoms, the positive proximals are greater than the randoms, and the positive distals are lower than the randoms. This suggests that the real GASes are likely active or activable.		The occurrences of real GAS UTRs and negative distals overlap the high end of the randoms, the positive proximals are greater than the randoms, and the positive distals are lower than the randoms. This suggests that the real GASes are likely active or activable.

			==GAS IDC checks==

	==Acknowledgements==		==Acknowledgements==

Gal4p gene transcriptions

2026-04-21T08:53:00Z

Samplings

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	==Samplings==		==Samplings==
			[[Gal4p gene transcriptions#Samplings\|Samplings]]

	Copying 5'-CGGACCGC-3' in "⌘F" yields none between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.		Copying 5'-CGGACCGC-3' in "⌘F" yields none between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.

GAAC element gene transcriptions

2026-04-21T07:49:26Z

GAAC element samplings

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	==GAAC element samplings==		==GAAC element samplings==
			[[GAAC element gene transcriptions#GAAC element samplings\|GAAC element samplings]]

			(r) GAACT (3590AK) -6 GAACT -2 INR- (7010) -27 GAACT -23 TATA-

			(c) CTTGA (2209X2) +41 CTTGA +45

			(i) TCAAG (9214BC) -46 TCAAG -42 (2209CR) -8 TCAAG -4 (8832) +10 TCAAG +14 (9214NM) +29 TCAAG +33 (8483) +36 TCAAG +40

			(ci) AGTTC (3593) -23 AGTTC -19 TATA+ (10068) -20 AGTTC -16 (9214BC) -7 AGTTC -3 (4063) +1 AGTTC +5 INR+ (10068) +2 AGTTC +6 INR-

	The GAAC element is usually a core promoter element containing guanine (G), adenine (A), and cytosine (C), "able to direct a new transcription start site 2-7 bases downstream of itself, independent of TATA and Inr regions."<ref name=Singh/>		The GAAC element is usually a core promoter element containing guanine (G), adenine (A), and cytosine (C), "able to direct a new transcription start site 2-7 bases downstream of itself, independent of TATA and Inr regions."<ref name=Singh/>

Forkhead box gene transcriptions

2026-04-21T06:34:41Z

Forkhead box (Li) samplings

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 ==Forkhead box (Yoshihara) samplings==
 Copying a responsive elements consensus sequence GTAAACAA and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.
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 ==Forkhead box (Li) samplings==
 Copying an apparent consensus sequence of (A/G)(C/T)AAA(C/T)A and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.
 For the Basic programs testing consensus sequence (A/G)(C/T)AAA(C/T)A (starting with SuccessablesFork.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

I box gene transcriptions

2026-04-21T04:22:57Z

F box samplings

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	==F box samplings==		==F box samplings==
			[[I box gene transcriptions#F box samplings\|F box samplings]]

	As the F box is just the I box with a "T" in front of it. It does not occur because the I box does not occur!		As the F box is just the I box with a "T" in front of it. It does not occur because the I box does not occur!

Ethylene responsive element gene transcriptions

2026-04-21T03:18:36Z

ERE samplings

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	==ERE samplings==		==ERE samplings==
	{{main\|Model samplings}}		{{main\|Model samplings}}
			[[Ethylene responsive element gene transcriptions#ERE samplings\|ERE samplings]]

	Copying an apparent consensus sequence of ATTTCAAA and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and one between ZNF497 and A1BG as can be found by the computer programs.		Copying an apparent consensus sequence of ATTTCAAA and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and one between ZNF497 and A1BG as can be found by the computer programs.

Estrogen response element gene transcriptions

2026-04-21T01:24:49Z

ERE2 (Driscoll) samplings

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	==ERE (Matsumoto) samplings==		==ERE (Matsumoto) samplings==
			[[Estrogen response element gene transcriptions#ERE (Matsumoto) samplings\|ERE (Matsumoto) samplings]]

	Copying an abridged consensus sequence for the estrogen response element of AGGTTA (ci=TAACCT) and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.		Copying an abridged consensus sequence for the estrogen response element of AGGTTA (ci=TAACCT) and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.
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	==ERE (Yasar) samplings==		==ERE (Yasar) samplings==
			[[Estrogen response element gene transcriptions#ERE (Yasar) samplings\|ERE (Yasar) samplings]]

	Copying an abridged consensus sequence for the estrogen response element of GGTCAGGAT and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.		Copying an abridged consensus sequence for the estrogen response element of GGTCAGGAT and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.
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	==ERE1 (Driscoll) samplings==		==ERE1 (Driscoll) samplings==
			[[Estrogen response element gene transcriptions#ERE1 (Driscoll) samplings\|ERE1 (Driscoll) samplings]]

	Copying a responsive elements consensus sequence GGTCA and putting the sequence in "⌘F" finds five between ZNF497 and A1BG or six between ZSCAN22 and A1BG as can be found by the computer programs.		Copying a responsive elements consensus sequence GGTCA and putting the sequence in "⌘F" finds five between ZNF497 and A1BG or six between ZSCAN22 and A1BG as can be found by the computer programs.
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	==ERE2 (Driscoll) samplings==		==ERE2 (Driscoll) samplings==
			[[Estrogen response element gene transcriptions#ERE2 (Driscoll) samplings\|ERE2 (Driscoll) samplings]]

	Copying a responsive elements consensus sequence TGACC and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.		Copying a responsive elements consensus sequence TGACC and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

Enhancer box gene transcriptions

2026-04-20T22:23:05Z

Enhancer box samplings

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 ==Enhancer box samplings==
 Regarding hypotheses 1:
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 The complement inverse is the same as the direct and the inverse is the same as the complement.
 ===Enhancer box (4560-2846) UTRs===

Endosperm expression gene transcriptions

2026-04-20T18:45:33Z

Endosperm expression samplings

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	==Endosperm expression samplings==		==Endosperm expression samplings==
			[[Endosperm expression gene transcriptions#Endosperm expression samplings\|Endosperm expression samplings]]

	Copying an apparent consensus sequence of TGTGTCA and putting it in "⌘F" finds one located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.		Copying an apparent consensus sequence of TGTGTCA and putting it in "⌘F" finds one located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.

Endoplasmic reticulum stress response element gene transcriptions

2026-04-20T08:07:05Z

CCACG samplings

← Older revision		Revision as of 08:07, 20 April 2026
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	==CCACG samplings==		==CCACG samplings==
			[[Endoplasmic reticulum stress response element gene transcriptions#CCACG samplings\|CCACG samplings]]

	Copying an apparent consensus sequence of CCACG and putting it in "⌘F" finds eight located between ZSCAN22 and A1BG on the negative strand and none on the positive strand and six on the negative strand between ZNF497 and eight on the positive strand and A1BG as can be found by the computer programs.		Copying an apparent consensus sequence of CCACG and putting it in "⌘F" finds eight located between ZSCAN22 and A1BG on the negative strand and none on the positive strand and six on the negative strand between ZNF497 and eight on the positive strand and A1BG as can be found by the computer programs.
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	==CCAAT-N9-CCACG Samplings==		==CCAAT-N9-CCACG Samplings==
			[[Endoplasmic reticulum stress response element gene transcriptions#CCAAT-N9-CCACG Samplings\|CCAAT-N9-CCACG Samplings]]

	According to So (2018) the endoplasmic reticulum stress response element should be CCAAT-N9-CCACG. Samplings below demonstrate that the ideal CCAAT-N9-CCACG or its complement inverse do not occur on either side of A1BG or close to ZSCAN22 or ZNF497.		According to So (2018) the endoplasmic reticulum stress response element should be CCAAT-N9-CCACG. Samplings below demonstrate that the ideal CCAAT-N9-CCACG or its complement inverse do not occur on either side of A1BG or close to ZSCAN22 or ZNF497.

EIN3 binding site gene transcriptions

2026-04-19T19:28:28Z

EIN3 analysis and results

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 ==EIN3 samplings==
 Copying a responsive elements consensus sequence ACGTACC and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.
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 # EIN3r8: ATGTACCT at 2781.
 # EIN3r6ci: AGGTTCGT at 1273.
 ==EIN3 analysis and results==

EIF4E basal element gene transcriptions

2026-04-19T06:01:08Z

Samplings

← Older revision		Revision as of 06:01, 19 April 2026
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	==Samplings==		==Samplings==
			[[EIF4E basal element gene transcriptions#Samplings\|Samplings]]

	The '''EIF4E basal element''', also eIF4E, (4EBE) is a basal promoter element for the eukaryotic translation initiation factor 4E. "Interactions between 4EBE and upstream activator sites are position, distance, and sequence dependent."<ref name=Lynch/>		The '''EIF4E basal element''', also eIF4E, (4EBE) is a basal promoter element for the eukaryotic translation initiation factor 4E. "Interactions between 4EBE and upstream activator sites are position, distance, and sequence dependent."<ref name=Lynch/>

DREB box gene transcriptions

2026-04-18T06:00:13Z

DREB box sampling of A1BG promoters

← Older revision		Revision as of 06:00, 18 April 2026
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	==DREB box sampling of A1BG promoters==		==DREB box sampling of A1BG promoters==
			[[DREB box gene transcriptions#DREB box sampling of A1BG promoters\|DREB box sampling of A1BG promoters]]

	Consensus sequence for the dehydration-responsive element-binding (DREB) box is 3'-TACCGACAT-5'.		Consensus sequence for the dehydration-responsive element-binding (DREB) box is 3'-TACCGACAT-5'.

Downstream TFIIB recognition element gene transcriptions

2026-04-16T07:20:49Z

dBRE samplings

← Older revision		Revision as of 07:20, 16 April 2026
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	27. CACCAAA IDC 1 (4063)		27. CACCAAA IDC 1 (4063)
	28. CACCAAC 0		28. CACCAAC 0
	29. (1) pp -40 CACCCCA -34 (1) np +29 ~~GTGGGGT~~ +35 ± 50 2 IDC 1 (7070)		29. (1) pp -40 CACCCCA -34 (1) np +29 CACCCCA +35 ± 50 2 IDC 1 (7070)
	30. CACCCCC IDC 4 (3590NM) (7070) (57611) (57715)		30. CACCCCC IDC 4 (3590NM) (7070) (57611) (57715)
	31. CACCCAA 0		31. CACCCAA 0

Downstream promoter element gene transcriptions

2026-03-28T22:48:53Z

DPE (Butler 2002) samplings

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