wikidoc - Changes related to "Calcitriol" [en]

Initiator-like element gene transcriptions

2026-05-11T19:26:42Z

TCT (Parry 2010) samplings

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	==Inr-like, TCTs (Matsumoto, 9 August 2020) sampling==		==Inr-like, TCTs (Matsumoto, 9 August 2020) sampling==
			[[Initiator-like element gene transcriptions#Inr-like, TCTs (Matsumoto, 9 August 2020) sampling\|Inr-like, TCTs (Matsumoto, 9 August 2020) sampling]]

	Copying TTCTCT in "⌘F" yields three between ZSCAN22 and A1BG and three between ZNF497 and A1BG as can be found by the computer programs.		Copying TTCTCT in "⌘F" yields three between ZSCAN22 and A1BG and three between ZNF497 and A1BG as can be found by the computer programs.
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	==TCT (Parry 2010) samplings==		==TCT (Parry 2010) samplings==
			[[Initiator-like element gene transcriptions#TCT (Parry 2010) samplings\|TCT (Parry 2010) samplings]]

	The TCT consensus sequence YCTYTYY, where Y is C/T, is (C/T)CT(C/T)T(C/T)(C/T).<ref name=Parry>Trevor J. Parry, Joshua W. M. Theisen, Jer-Yuan Hsu, Yuan-Liang Wang, David L. Corcoran, Moriah Eustice, Uwe Ohler, and James T. Kadonaga (27 August 2010) The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery. Genes & Development 24:2013–2018. doi:10.1101/gad.1951110. https://genesdev.cshlp.org/content/24/18/2013.full.html.</ref>		The TCT consensus sequence YCTYTYY, where Y is C/T, is (C/T)CT(C/T)T(C/T)(C/T).<ref name=Parry>Trevor J. Parry, Joshua W. M. Theisen, Jer-Yuan Hsu, Yuan-Liang Wang, David L. Corcoran, Moriah Eustice, Uwe Ohler, and James T. Kadonaga (27 August 2010) The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery. Genes & Development 24:2013–2018. doi:10.1101/gad.1951110. https://genesdev.cshlp.org/content/24/18/2013.full.html.</ref>

Initiator element gene transcriptions

2026-05-10T06:16:49Z

Drosophila melanogaster (Butler 2002) initiator element samplings

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	==YYANWYY (Liston 1999) samplings==		==YYANWYY (Liston 1999) samplings==
	{{main\|A1BG gene transcription core promoters}}		{{main\|A1BG gene transcription core promoters}}
			[[Initiator element gene transcriptions#YYANWYY (Liston 1999) samplings\|YYANWYY (Liston 1999) samplings]]

	For the Basic programs (starting with SuccessablesInr.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs (starting with SuccessablesInr.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
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	==YYRNWYY (Juven-Gershon June 2008) samplings==		==YYRNWYY (Juven-Gershon June 2008) samplings==
	{{main\|A1BG gene transcription core promoters}}		{{main\|A1BG gene transcription core promoters}}
			[[Initiator element gene transcriptions#YYRNWYY (Juven-Gershon June 2008) samplings\|YYRNWYY (Juven-Gershon June 2008) samplings]]

	The wider consensus sequence of 3'-YYRNWYY-5' allows a G at the TSS but at most only allows two Gs in a row.<ref name=Gershon2008>{{ cite journal		The wider consensus sequence of 3'-YYRNWYY-5' allows a G at the TSS but at most only allows two Gs in a row.<ref name=Gershon2008>{{ cite journal
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	==BBCABW (Ngoc 20 January 2017) samplings==		==BBCABW (Ngoc 20 January 2017) samplings==
			[[Initiator element gene transcriptions#BBCABW (Ngoc 20 January 2017) samplings\|BBCABW (Ngoc 20 January 2017) samplings]]

	For the Basic programs (starting with SuccessablesInr2.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs (starting with SuccessablesInr2.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
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	==''Drosophila melanogaster'' (Butler 2002) initiator element samplings==		==''Drosophila melanogaster'' (Butler 2002) initiator element samplings==
			[[Initiator element gene transcriptions#''Drosophila melanogaster'' (Butler 2002) initiator element samplings\|''Drosophila melanogaster'' (Butler 2002) initiator element samplings]]

	Copying a responsive elements consensus sequence TCA(G/T)T(C/T) and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.		Copying a responsive elements consensus sequence TCA(G/T)T(C/T) and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

I box gene transcriptions

2026-05-06T06:34:24Z

I box samplings

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	==I box samplings==		==I box samplings==
			[[I box gene transcriptions#I box samplings\|I box samplings]]

	Copying an apparent consensus sequence for the I box of GATAAG and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.		Copying an apparent consensus sequence for the I box of GATAAG and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.

Hypoxia response element gene transcriptions

2026-05-06T04:54:18Z

Hypoxia response element samplings

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	==Hypoxia response element samplings==		==Hypoxia response element samplings==
			[[Hypoxia response element gene transcriptions#Hypoxia response element samplings\|Hypoxia response element samplings]]

	Copying a responsive element consensus sequence CACGC and putting the sequence in "⌘F" finds 25 between ZNF497 and A1BG or 8 between ZSCAN22 and A1BG as can be found by the computer programs.		Copying a responsive element consensus sequence CACGC and putting the sequence in "⌘F" finds 25 between ZNF497 and A1BG or 8 between ZSCAN22 and A1BG as can be found by the computer programs.

Hypoxia-inducible factor gene transcriptions

2026-05-05T23:09:44Z

Hypoxia-inducible factor samplings

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	==HIF-1 samplings==		==HIF-1 samplings==
	{{main\|Model samplings}}		{{main\|Model samplings}}
			[[Hypoxia-inducible factor gene transcriptions#HIF-1 samplings\|HIF-1 samplings]]

	Copying a portion of the consensus sequence for the HIF of GCCCTACGTGCTGTCTCA and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be ACTCTGTCGTGCATCCCG found by the computer programs.		Copying a portion of the consensus sequence for the HIF of GCCCTACGTGCTGTCTCA and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be ACTCTGTCGTGCATCCCG found by the computer programs.

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	==Hypoxia-inducible factor samplings==		==Hypoxia-inducible factor samplings==
			[[Hypoxia-inducible factor gene transcriptions#Hypoxia-inducible factor samplings\|Hypoxia-inducible factor samplings]]

	Copying ACGTG in "⌘F" yields eight between ZSCAN22 and A1BG as can be found by the computer programs.		Copying ACGTG in "⌘F" yields eight between ZSCAN22 and A1BG as can be found by the computer programs.

HY box gene transcriptions

2026-05-05T09:08:19Z

HY box samplings

← Older revision		Revision as of 09:08, 5 May 2026
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	==HY box samplings==		==HY box samplings==
			[[HY box gene transcriptions#HY box samplings\|HY box samplings]]

	For the Basic programs (starting with SuccessablesHY.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs (starting with SuccessablesHY.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

Homeobox gene transcriptions

2026-05-05T00:04:42Z

Homeodomain samplings

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	==Homeobox samplings==		==Homeobox samplings==
			[[Homeobox gene transcriptions#Homeobox samplings\|Homeobox samplings]]

	Copying a portion of the homeobox motif of CAAG and putting it in "⌘F" finds eight located between ZSCAN22 and A1BG and 21 between ZNF497 and A1BG as can be found by the computer programs.		Copying a portion of the homeobox motif of CAAG and putting it in "⌘F" finds eight located between ZSCAN22 and A1BG and 21 between ZNF497 and A1BG as can be found by the computer programs.
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	==Homeodomain samplings==		==Homeodomain samplings==
			[[Homeobox gene transcriptions#Homeodomain samplings\|Homeodomain samplings]]

	For the Basic programs testing consensus sequence TAAT (starting with SuccessablesTAAT.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence TAAT (starting with SuccessablesTAAT.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

HMG box gene transcriptions

2026-05-04T23:58:49Z

HMG box samplings

← Older revision		Revision as of 23:58, 4 May 2026
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	==HMG box samplings==		==HMG box samplings==
	{{main\|Model samplings}}		{{main\|Model samplings}}
			[[HMG box gene transcriptions#HMG box samplings\|HMG box samplings]]

	Copying a responsive elements consensus sequence (A/T)(A/T)CAAAG and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.		Copying a responsive elements consensus sequence (A/T)(A/T)CAAAG and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

HNF gene transcriptions

2026-05-04T07:57:15Z

IDC check of (r) HNF6 (864)

← Older revision		Revision as of 07:57, 4 May 2026
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	==HNF6 samplings==		==HNF6 samplings==
			[[HNF gene transcriptions#HNF6 samplings\|HNF6 samplings]]

	For the Basic programs (starting with SuccessablesHNF6.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs (starting with SuccessablesHNF6.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
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	(15) ATATCGATAA 0 ATATCGATAG 0 ATATCGATAT 0 ATATCGATCA 0 ATATCGATCG 0 ATATCGATCT 0 ATATCGATGA 0 ATATCGATGG 0 ATATCGATGT 0 ATATCGATTA 0 ATATCGATTG 0 ATATCGATTT 0		(15) ATATCGATAA 0 ATATCGATAG 0 ATATCGATAT 0 ATATCGATCA 0 ATATCGATCG 0 ATATCGATCT 0 ATATCGATGA 0 ATATCGATGG 0 ATATCGATGT 0 ATATCGATTA 0 ATATCGATTG 0 ATATCGATTT 0

	(4) ATATTAATAA 0 ATATTAATAG 0 ATATTAATAT 0 ATATTAATCA 0 ATATTAATCG 0 ATATTAATCT 0 ATATTAATGA 0 ATATTAATGG 0 ATATTAATGT 0 ATATTAATTA 0 ATATTAATTG 0 ATATTAATTT 0		(16) ATATTAATAA 0 ATATTAATAG 0 ATATTAATAT 0 ATATTAATCA 0 ATATTAATCG 0 ATATTAATCT 0 ATATTAATGA 0 ATATTAATGG 0 ATATTAATGT 0 ATATTAATTA 0 ATATTAATTG 0 ATATTAATTT 0

	(5) ATATTCATAA 0 ATATTCATAG 0 ATATTCATAT 0 ATATTCATCA 0 ATATTCATCG 0 ATATTCATCT 0 ATATTCATGA 0 ATATTCATGG 0 ATATTCATGT 0 ATATTCATTA 0 ATATTCATTG 0 ATATTCATTT 0		(5) ATATTCATAA 0 ATATTCATAG 0 ATATTCATAT 0 ATATTCATCA 0 ATATTCATCG 0 ATATTCATCT 0 ATATTCATGA 0 ATATTCATGG 0 ATATTCATGT 0 ATATTCATTA 0 ATATTCATTG 0 ATATTCATTT 0

Hex sequence gene transcriptions

2026-05-04T07:49:27Z

Hex core samplings

← Older revision		Revision as of 07:49, 4 May 2026
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	==Hex core samplings==		==Hex core samplings==
			[[Hex sequence gene transcriptions#Hex core samplings\|Hex core samplings]]

	Copying a responsive elements consensus sequence TGACGTGGC and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.		Copying a responsive elements consensus sequence TGACGTGGC and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

HNF gene transcriptions

2026-05-04T05:30:56Z

IDC check of (r) HNF6 (864)

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	The occurrences of real HNF6 UTRs are outside the randoms, proximals and negative distals are greater than randoms, positive distals are less than randoms. This suggests that the real HNF6s are likely active or activable.		The occurrences of real HNF6 UTRs are outside the randoms, proximals and negative distals are greater than randoms, positive distals are less than randoms. This suggests that the real HNF6s are likely active or activable.

			==IDC check of (r) HNF6 (864)==

			(1) AAATCAATAA 0 AAATCAATAG 0 AAATCAATAT 0 AAATCAATCA 0 AAATCAATCG 0 AAATCAATCT 0 AAATCAATGA 0 AAATCAATGG 0 AAATCAATGT 0 AAATCAATTA 0 AAATCAATTG 0 AAATCAATTT 0

			(2) AAATCCATAA 0 AAATCCATAG 0 AAATCCATAT 0 AAATCCATCA 0 AAATCCATCG 0 AAATCCATCT 0 AAATCCATGA 0 AAATCCATGG 0 AAATCCATGT 0 AAATCCATTA 0 AAATCCATTG 0 AAATCCATTT 0

			(3) AAATCGATAA 0 AAATCGATAG 0 AAATCGATAT 0 AAATCGATCA 0 AAATCGATCG 0 AAATCGATCT 0 AAATCGATGA 0 AAATCGATGG 0 AAATCGATGT 0 AAATCGATTA 0 AAATCGATTG 0 AAATCGATTT 0

			(4) AAATTAATAA 0 AAATTAATAG 0 AAATTAATAT 0 AAATTAATCA 0 AAATTAATCG 0 AAATTAATCT 0 AAATTAATGA 0 AAATTAATGG 0 AAATTAATGT 0 AAATTAATTA 0 AAATTAATTG 0 AAATTAATTT 0

			(5) AAATTCATAA 0 AAATTCATAG 0 AAATTCATAT 0 AAATTCATCA 0 AAATTCATCG 0 AAATTCATCT 0 AAATTCATGA 0 AAATTCATGG 0 AAATTCATGT 0 AAATTCATTA 0 AAATTCATTG 0 AAATTCATTT 0

			(6) AAATTGATAA 0 AAATTGATAG 0 AAATTGATAT 0 AAATTGATCA 0 AAATTGATCG 0 AAATTGATCT 0 AAATTGATGA 0 AAATTGATGG 0 AAATTGATGT 0 AAATTGATTA 0 AAATTGATTG 0 AAATTGATTT 0

			(7) AAGTCAATAA 0 AAGTCAATAG 0 AAGTCAATAT 0 AAGTCAATCA 0 AAGTCAATCG 0 AAGTCAATCT 0 AAGTCAATGA 0 AAGTCAATGG 0 AAGTCAATGT 0 AAGTCAATTA 0 AAGTCAATTG 0 AAGTCAATTT 0

			(8) AAGTCCATAA 0 AAGTCCATAG 0 AAGTCCATAT 0 AAGTCCATCA 0 AAGTCCATCG 0 AAGTCCATCT 0 AAGTCCATGA 0 AAGTCCATGG 0 AAGTCCATGT 0 AAGTCCATTA 0 AAGTCCATTG 0 AAGTCCATTT 0

			(9) AAGTCGATAA 0 AAGTCGATAG 0 AAGTCGATAT 0 AAGTCGATCA 0 AAGTCGATCG 0 AAGTCGATCT 0 AAGTCGATGA 0 AAGTCGATGG 0 AAGTCGATGT 0 AAGTCGATTA 0 AAGTCGATTG 0 AAGTCGATTT 0

			(10) AAGTTAATAA 0 AAGTTAATAG 0 AAGTTAATAT 0 AAGTTAATCA 0 AAGTTAATCG 0 AAGTTAATCT 0 AAGTTAATGA 0 AAGTTAATGG 0 AAGTTAATGT 0 AAGTTAATTA 0 AAGTTAATTG 0 AAGTTAATTT 0

			(11) AAGTTCATAA 0 AAGTTCATAG 0 AAGTTCATAT 0 AAGTTCATCA 0 AAGTTCATCG 0 AAGTTCATCT 0 AAGTTCATGA 0 AAGTTCATGG 0 AAGTTCATGT 0 AAGTTCATTA 0 AAGTTCATTG 0 AAGTTCATTT 0

			(12) AAGTTGATAA 0 AAGTTGATAG 0 AAGTTGATAT 0 AAGTTGATCA 0 AAGTTGATCG 0 AAGTTGATCT 0 AAGTTGATGA 0 AAGTTGATGG 0 AAGTTGATGT 0 AAGTTGATTA 0 AAGTTGATTG 0 AAGTTGATTT 0

			(13) ATATCAATAA 0 ATATCAATAG 0 ATATCAATAT 0 ATATCAATCA 0 ATATCAATCG 0 ATATCAATCT 0 ATATCAATGA 0 ATATATCAATGG 0 ATATCAATGT 0 ATATCAATTA 0 ATATCAATTG 0 ATATCAATTT 0

			(14) ATATCCATAA 0 ATATCCATAG 0 ATATCCATAT 0 ATATCCATCA 0 ATATCCATCG 0 ATATCCATCT 0 ATATCCATGA 0 ATATCCATGG 0 ATATCCATGT 0 ATATCCATTA 0 ATATCCATTG 0 ATATCCATTT 0

			(15) ATATCGATAA 0 ATATCGATAG 0 ATATCGATAT 0 ATATCGATCA 0 ATATCGATCG 0 ATATCGATCT 0 ATATCGATGA 0 ATATCGATGG 0 ATATCGATGT 0 ATATCGATTA 0 ATATCGATTG 0 ATATCGATTT 0

			(4) ATATTAATAA 0 ATATTAATAG 0 ATATTAATAT 0 ATATTAATCA 0 ATATTAATCG 0 ATATTAATCT 0 ATATTAATGA 0 ATATTAATGG 0 ATATTAATGT 0 ATATTAATTA 0 ATATTAATTG 0 ATATTAATTT 0

			(5) ATATTCATAA 0 ATATTCATAG 0 ATATTCATAT 0 ATATTCATCA 0 ATATTCATCG 0 ATATTCATCT 0 ATATTCATGA 0 ATATTCATGG 0 ATATTCATGT 0 ATATTCATTA 0 ATATTCATTG 0 ATATTCATTT 0

			(6) ATATTGATAA 0 ATATTGATAG 0 ATATTGATAT 0 ATATTGATCA 0 ATATTGATCG 0 ATATTGATCT 0 ATATTGATGA 0 ATATTGATGG 0 ATATTGATGT 0 ATATTGATTA 0 ATATTGATTG 0 ATATTGATTT 0

			(7) ATGTCAATAA 0 ATGTCAATAG 0 ATGTCAATAT 0 ATGTCAATCA 0 ATGTCAATCG 0 ATGTCAATCT 0 ATGTCAATGA 0 ATGTCAATGG 0 ATGTCAATGT 0 ATGTCAATTA 0 ATGTCAATTG 0 ATGTCAATTT 0

			(8) ATGTCCATAA 0 ATGTCCATAG 0 ATGTCCATAT 0 ATGTCCATCA 0 ATGTCCATCG 0 ATGTCCATCT 0 ATGTCCATGA 0 ATGTCCATGG 0 ATGTCCATGT 0 ATGTCCATTA 0 ATGTCCATTG 0 ATGTCCATTT 0

			(9) ATGTCGATAA 0 ATGTCGATAG 0 ATGTCGATAT 0 ATGTCGATCA 0 ATGTCGATCG 0 ATGTCGATCT 0 ATGTCGATGA 0 ATGTCGATGG 0 ATGTCGATGT 0 ATGTCGATTA 0 ATGTCGATTG 0 ATGTCGATTT 0

			(10) ATGTTAATAA 0 ATGTTAATAG 0 ATGTTAATAT 0 ATGTTAATCA 0 ATGTTAATCG 0 ATGTTAATCT 0 ATGTTAATGA 0 ATGTTAATGG 0 ATGTTAATGT 0 ATGTTAATTA 0 ATGTTAATTG 0 ATGTTAATTT 0

			(11) ATGTTCATAA 0 ATGTTCATAG 0 ATGTTCATAT 0 ATGTTCATCA 0 ATGTTCATCG 0 ATGTTCATCT 0 ATGTTCATGA 0 ATGTTCATGG 0 ATGTTCATGT 0 ATGTTCATTA 0 ATGTTCATTG 0 ATGTTCATTT 0

			(12) ATGTTGATAA 0 ATGTTGATAG 0 ATGTTGATAT 0 ATGTTGATCA 0 ATGTTGATCG 0 ATGTTGATCT 0 ATGTTGATGA 0 ATGTTGATGG 0 ATGTTGATGT 0 ATGTTGATTA 0 ATGTTGATTG 0 ATGTTGATTT 0

	==Acknowledgements==		==Acknowledgements==

HMG box gene transcriptions

2026-04-30T20:20:15Z

Helper site samplings

← Older revision		Revision as of 20:20, 30 April 2026
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	==Helper site samplings==		==Helper site samplings==
			[[HMG box gene transcriptions#Helper site samplings\|Helper site samplings]]

	For the Basic programs testing consensus sequence (C/G)C(C/G)G(C/G) (starting with SuccessablesHelp.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence (C/G)C(C/G)G(C/G) (starting with SuccessablesHelp.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

Hsf1p gene transcriptions

2026-04-29T09:23:42Z

Hsf (Tang) samplings

← Older revision		Revision as of 09:23, 29 April 2026
(12 intermediate revisions by the same user not shown)
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	==Hsf (Tang) samplings==		==Hsf (Tang) samplings==
			[[Hsf1p gene transcriptions#Hsf (Tang) samplings\|Hsf (Tang) samplings]]

	Copying 5'-TGAAA-3' in "⌘F" yields twelve between ZSCAN22 and A1BG and 5'-CGAAC-3' one between ZNF497 and A1BG as can be found by the computer programs.		Copying 5'-TGAAA-3' in "⌘F" yields twelve between ZSCAN22 and A1BG and 5'-CGAAC-3' one between ZNF497 and A1BG as can be found by the computer programs.
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	==HSE1 (Eastmond) samplings==		==HSE1 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE1 (Eastmond) samplings\|HSE1 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nGAAnnTTCnnGAAn (starting with SuccessablesHSE1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nGAAnnTTCnnGAAn (starting with SuccessablesHSE1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
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	==HSE2 (Eastmond) samplings==		==HSE2 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE2 (Eastmond) samplings\|HSE2 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nTTCnnGAAnnTTCn (starting with SuccessablesHSE2.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nTTCnnGAAnnTTCn (starting with SuccessablesHSE2.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
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	==HSE3 (Eastmond) samplings==		==HSE3 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE3 (Eastmond) samplings\|HSE3 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nGAAn-(5-bp)-nGAAnnTTCn (starting with SuccessablesHSE3.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nGAAn-(5-bp)-nGAAnnTTCn (starting with SuccessablesHSE3.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
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	==HSE4 (Eastmond) samplings==		==HSE4 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE4 (Eastmond) samplings\|HSE4 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nGAAn-(5-bp)-nGAAn-(5-bp)-nGAAn (starting with SuccessablesHSE4.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nGAAn-(5-bp)-nGAAn-(5-bp)-nGAAn (starting with SuccessablesHSE4.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
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	==HSE5 (Eastmond) samplings==		==HSE5 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE5 (Eastmond) samplings\|HSE5 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nTTCn-(5-bp)-nTTCnnGAAn (starting with SuccessablesHSE5.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nTTCn-(5-bp)-nTTCnnGAAn (starting with SuccessablesHSE5.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
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	==HSE6 (Eastmond) samplings==		==HSE6 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE6 (Eastmond) samplings\|HSE6 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nTTCn-nnGAAn-(5-bp)-nGAAn (starting with SuccessablesHSE6.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nTTCn-nnGAAn-(5-bp)-nGAAn (starting with SuccessablesHSE6.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
Line 648:		Line 655:

	==HSE7 PFT1 (Eastmond) samplings==		==HSE7 PFT1 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE7 PFT1 (Eastmond) samplings\|HSE7 PFT1 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nGA(A/G)nnTTCnnGAAn (starting with Successables PFT1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nGA(A/G)nnTTCnnGAAn (starting with Successables PFT1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
Line 668:		Line 676:

	==HSE7 PFT2 (Eastmond) samplings==		==HSE7 PFT2 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE7 PFT2 (Eastmond) samplings\|HSE7 PFT2 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nGAAnnTTCnnGARn (starting with SuccessablesHSE1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nGAAnnTTCnnGARn (starting with SuccessablesHSE1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
Line 688:		Line 697:

	==HSE8 GAP1 (Eastmond) samplings==		==HSE8 GAP1 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE8 GAP1 (Eastmond) samplings\|HSE8 GAP1 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nGA(A/G)n-(5-bp)-nGAAnnTTCn (starting with SuccessablesGAP1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nGA(A/G)n-(5-bp)-nGAAnnTTCn (starting with SuccessablesGAP1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
Line 794:		Line 804:

	==HSE9 GAP2 (Eastmond) samplings==		==HSE9 GAP2 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE9 GAP2 (Eastmond) samplings\|HSE9 GAP2 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nGAAn-(5-bp)-nGARnnTTCn (starting with SuccessablesGAP2.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nGAAn-(5-bp)-nGARnnTTCn (starting with SuccessablesGAP2.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
Line 896:		Line 907:

	==HSE10 (Eastmond) samplings==		==HSE10 (Eastmond) samplings==
			[[Hsf1p gene transcriptions#HSE10 (Eastmond) samplings\|HSE10 (Eastmond) samplings]]

	For the Basic programs testing consensus sequence nTTCn-(11-bp)-nGAAn-(5 bp)-nGAAn (starting with SuccessablesHSE3.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence nTTCn-(11-bp)-nGAAn-(5 bp)-nGAAn (starting with SuccessablesHSE3.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

Heat-responsive element gene transcriptions

2026-04-28T22:40:59Z

HRE samplings

← Older revision		Revision as of 22:40, 28 April 2026
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	==HRE samplings==		==HRE samplings==
	{{main\|Model samplings}}		{{main\|Model samplings}}
			[[Heat-responsive element gene transcriptions#HRE samplings\|HRE samplings]]

	Copying an apparent consensus sequence of the HRE AAAAAATTTC and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.		Copying an apparent consensus sequence of the HRE AAAAAATTTC and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.

H box gene transcriptions

2026-04-28T20:29:14Z

H boxes (Rozhdestvensky) in promoters of A1BG

← Older revision		Revision as of 20:29, 28 April 2026
(2 intermediate revisions by the same user not shown)
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	==H boxes (Mitchell) samplings==		==H boxes (Mitchell) samplings==
			[[H box gene transcriptions#H boxes (Mitchell) samplings\|H boxes (Mitchell) samplings]]

	For the Basic programs testing consensus sequence 3'-ANANNA-5' (starting with SuccessablesHbox3.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs testing consensus sequence 3'-ANANNA-5' (starting with SuccessablesHbox3.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
Line 402:		Line 403:
	\|accessdate=2014-06-08 }}</ref>		\|accessdate=2014-06-08 }}</ref>

	==H boxes (Rozhdestvensky) ~~in promoters of A1BG~~==		==H boxes (Rozhdestvensky) samplings==
			[[H box gene transcriptions#H boxes (Rozhdestvensky) samplings\|H boxes (Rozhdestvensky) samplings]]

	For the Basic programs (starting with SuccessablesHACA.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:		For the Basic programs (starting with SuccessablesHACA.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

Gcr1p gene transcriptions

2026-04-28T05:35:47Z

GCR1 samplings

← Older revision		Revision as of 05:35, 28 April 2026
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	==GCR1 samplings==		==GCR1 samplings==
			[[Gcr1p gene transcriptions#GCR1 samplings\|GCR1 samplings]]

	Copying the apparent consensus sequence for Gcr1p CTTCC and putting it in "⌘F" finds four located between ZSCAN22 and six between ZNF497 and A1BG as can be found by the computer programs.		Copying the apparent consensus sequence for Gcr1p CTTCC and putting it in "⌘F" finds four located between ZSCAN22 and six between ZNF497 and A1BG as can be found by the computer programs.

Gibberellin responsive element gene transcriptions

2026-04-28T05:29:57Z

GRE samplings

← Older revision		Revision as of 05:29, 28 April 2026
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	==GRE samplings==		==GRE samplings==
			[[Gibberellin responsive element gene transcriptions#GRE samplings\|GRE samplings]]

	Copying an apparent consensus sequence of CCTTTTG, AAACAGA and putting it in "⌘F" finds one located between ZSCAN22 and A1BG and two between ZNF497 and A1BG as can be found by the computer programs.		Copying an apparent consensus sequence of CCTTTTG, AAACAGA and putting it in "⌘F" finds one located between ZSCAN22 and A1BG and two between ZNF497 and A1BG as can be found by the computer programs.

Glucocorticoid response element gene transcriptions

2026-04-28T05:26:41Z

Glu samplings

← Older revision		Revision as of 05:26, 28 April 2026
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	==Glu samplings==		==Glu samplings==
			[[Glucocorticoid response element gene transcriptions#Glu samplings\|Glu samplings]]

	Copying an apparent consensus sequence of AGAACA and putting it in "⌘F" finds one located between ZSCAN22 and A1BG and two between ZNF497 and A1BG as can be found by the computer programs.		Copying an apparent consensus sequence of AGAACA and putting it in "⌘F" finds one located between ZSCAN22 and A1BG and two between ZNF497 and A1BG as can be found by the computer programs.

Grainy head transcription factor gene transcriptions

2026-04-28T05:24:41Z

Mouse grainy head samplings

← Older revision		Revision as of 05:24, 28 April 2026
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	==Mouse grainy head samplings==		==Mouse grainy head samplings==
			[[Grainy head transcription factor gene transcriptions#Mouse grainy head samplings\|Mouse grainy head samplings]]

	Copying the GRHL1 DNA‐binding consensus sequence AACCGGTT and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.		Copying the GRHL1 DNA‐binding consensus sequence AACCGGTT and putting it in "⌘F" finds none located between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.